Wall clock time and date at job start Fri Apr 10 2020 21:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46878 * 2 1 4 4 C 1.50703 * 109.46608 * 240.00393 * 2 1 3 5 5 O 1.21287 * 119.99545 * 239.99954 * 4 2 1 6 6 N 1.34770 * 120.00512 * 59.99762 * 4 2 1 7 7 C 1.46503 * 120.00332 * 179.97438 * 6 4 2 8 8 H 1.08995 * 110.88316 * 37.42693 * 7 6 4 9 9 C 1.54907 * 111.00029 * 273.54803 * 7 6 4 10 10 N 1.47429 * 104.83221 * 204.87693 * 9 7 6 11 11 C 1.36937 * 125.65194 * 204.09530 * 10 9 7 12 12 H 1.07995 * 119.99854 * 163.18750 * 11 10 9 13 13 C 1.38810 * 119.99661 * 343.18607 * 11 10 9 14 14 N 1.31618 * 120.00092 * 331.96840 * 13 11 10 15 15 Si 1.86804 * 119.99876 * 151.97251 * 13 11 10 16 16 H 1.48495 * 109.47307 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46788 * 299.99920 * 15 13 11 18 18 H 1.48500 * 109.46905 * 59.99697 * 15 13 11 19 19 C 1.47026 * 108.70030 * 24.35677 * 10 9 7 20 20 C 1.54341 * 107.26462 * 358.58550 * 19 10 9 21 21 H 1.09004 * 110.51160 * 96.45147 * 20 19 10 22 22 C 1.52991 * 111.00203 * 219.59998 * 20 19 10 23 23 C 1.50699 * 109.47277 * 120.00513 * 2 1 3 24 24 C 1.35318 * 126.12875 * 85.02107 * 23 2 1 25 25 C 1.39873 * 107.91558 * 179.97438 * 24 23 2 26 26 N 1.30835 * 108.20572 * 0.02562 * 25 24 23 27 27 N 1.34945 * 126.12482 * 264.71272 * 23 2 1 28 28 C 1.46505 * 126.03924 * 0.03134 * 27 23 2 29 29 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46572 * 299.99802 * 1 2 3 31 31 H 1.08994 * 109.47422 * 59.99740 * 1 2 3 32 32 H 0.97001 * 119.99902 * 0.02562 * 6 4 2 33 33 H 1.09007 * 110.36796 * 86.04041 * 9 7 6 34 34 H 1.08999 * 110.37205 * 323.71420 * 9 7 6 35 35 H 0.96993 * 119.99981 * 353.96949 * 14 13 11 36 36 H 1.08999 * 109.88316 * 118.13095 * 19 10 9 37 37 H 1.09003 * 109.88326 * 239.29965 * 19 10 9 38 38 H 1.08998 * 109.47464 * 173.78245 * 22 20 19 39 39 H 1.09002 * 109.47558 * 293.78262 * 22 20 19 40 40 H 1.09002 * 109.47177 * 53.78400 * 22 20 19 41 41 H 1.07996 * 126.03715 * 359.94133 * 24 23 2 42 42 H 1.08001 * 125.89518 * 180.02562 * 25 24 23 43 43 H 1.09002 * 109.46692 * 89.99886 * 28 27 23 44 44 H 1.08990 * 109.47251 * 210.00393 * 28 27 23 45 45 H 1.09003 * 109.47140 * 330.00469 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7295 -1.6965 -1.1193 6 7 1.7066 -0.2499 -2.4546 7 6 2.1953 -0.9402 -3.6509 8 1 2.2012 -2.0198 -3.5013 9 6 3.6009 -0.4276 -4.0523 10 7 3.7031 -0.6992 -5.4977 11 6 4.8681 -0.8586 -6.1995 12 1 4.8509 -1.3155 -7.1779 13 6 6.0711 -0.4328 -5.6533 14 7 6.0875 0.5642 -4.7943 15 14 7.6667 -1.2748 -6.1376 16 1 8.8003 -0.6373 -5.4208 17 1 7.5972 -2.7132 -5.7750 18 1 7.8711 -1.1429 -7.6026 19 6 2.3470 -0.7643 -6.0621 20 6 1.3557 -0.5559 -4.8977 21 1 1.0421 0.4867 -4.8450 22 6 0.1428 -1.4775 -5.0386 23 6 2.0324 -0.7105 1.2304 24 6 2.2090 -2.0454 1.3647 25 6 2.6882 -2.2883 2.6561 26 7 2.7950 -1.1405 3.2750 27 7 2.3923 -0.1289 2.3937 28 6 2.3633 1.3066 2.6849 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.1493 0.5390 -2.5436 33 1 4.3730 -0.9722 -3.5085 34 1 3.6837 0.6422 -3.8606 35 1 5.2737 1.0582 -4.6090 36 1 2.2174 0.0209 -6.8070 37 1 2.1814 -1.7408 -6.5172 38 1 -0.4845 -1.3908 -4.1514 39 1 -0.4317 -1.1901 -5.9192 40 1 0.4802 -2.5085 -5.1455 41 1 2.0137 -2.7913 0.6085 42 1 2.9286 -3.2561 3.0707 43 1 1.3914 1.5734 3.1001 44 1 3.1448 1.5470 3.4056 45 1 2.5320 1.8673 1.7655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079716302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:48:34 Heat of formation + Delta-G solvation = 38.033153 kcal Electronic energy + Delta-G solvation = -25893.531634 eV Core-core repulsion = 22333.354136 eV Total energy + Delta-G solvation = -3560.177498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.41528 -40.98921 -39.34734 -35.89107 -35.36656 -34.31816 -33.84523 -32.13953 -30.28169 -29.36903 -27.58122 -27.23086 -26.03854 -25.04569 -22.76084 -22.18402 -21.67885 -21.39753 -20.26622 -19.62298 -18.07182 -17.82142 -17.38525 -16.46688 -16.40999 -15.96009 -15.85461 -15.62346 -15.39726 -15.00627 -14.67951 -14.50933 -14.42886 -14.07936 -14.00868 -13.68039 -13.39994 -13.27899 -13.16588 -13.05532 -13.03112 -12.68982 -12.53990 -12.31246 -12.13685 -12.06926 -11.92471 -11.67494 -11.60510 -11.55194 -10.83839 -10.55365 -10.24861 -10.09048 -9.41356 -9.06002 -8.37687 -5.38833 0.82742 1.51540 1.52960 1.58159 1.62028 1.79284 1.87530 2.16436 2.60574 3.15524 3.28590 3.48866 3.51854 3.68984 3.76723 3.87908 3.96979 4.02963 4.08655 4.32780 4.33528 4.42528 4.47622 4.54872 4.65234 4.68369 4.74576 4.80913 4.86325 4.87803 4.94250 4.98072 5.04434 5.05702 5.19460 5.21041 5.29017 5.38305 5.53054 5.64043 5.72854 6.07473 6.26950 6.53865 6.70622 6.85647 7.25180 7.65447 8.23465 8.94442 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.004050 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.883311 B = 6911.899695 C = 8108.151559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.036 4.036 3 H 0.132 0.868 4 C 0.515 3.485 5 O -0.567 6.567 6 N -0.696 5.696 7 C 0.151 3.849 8 H 0.075 0.925 9 C 0.151 3.849 10 N -0.626 5.626 11 C -0.350 4.350 12 H 0.063 0.937 13 C -0.077 4.077 14 N -0.944 5.944 15 Si 1.111 2.889 16 H -0.291 1.291 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.131 3.869 20 C -0.089 4.089 21 H 0.101 0.899 22 C -0.129 4.129 23 C 0.086 3.914 24 C -0.257 4.257 25 C 0.032 3.968 26 N -0.327 5.327 27 N -0.375 5.375 28 C 0.086 3.914 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.418 0.582 33 H -0.003 1.003 34 H 0.010 0.990 35 H 0.254 0.746 36 H 0.026 0.974 37 H 0.032 0.968 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.138 0.862 42 H 0.203 0.797 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.332 2.749 10.998 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.059 4.059 3 H 0.149 0.851 4 C 0.301 3.699 5 O -0.445 6.445 6 N -0.349 5.349 7 C 0.045 3.955 8 H 0.093 0.907 9 C 0.024 3.976 10 N -0.353 5.353 11 C -0.478 4.478 12 H 0.081 0.919 13 C -0.273 4.273 14 N -0.586 5.586 15 Si 0.935 3.065 16 H -0.217 1.217 17 H -0.213 1.213 18 H -0.191 1.191 19 C 0.007 3.993 20 C -0.108 4.108 21 H 0.119 0.881 22 C -0.187 4.187 23 C -0.042 4.042 24 C -0.286 4.286 25 C -0.152 4.152 26 N -0.149 5.149 27 N -0.158 5.158 28 C -0.053 4.053 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.256 0.744 33 H 0.016 0.984 34 H 0.028 0.972 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.156 0.844 42 H 0.219 0.781 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.824 2.719 12.417 20.297 hybrid contribution -1.219 -0.113 -1.200 1.714 sum -17.042 2.606 11.217 20.568 Atomic orbital electron populations 1.21788 0.88075 1.03754 1.05200 1.19864 1.00075 0.99898 0.86074 0.85084 1.20751 0.79496 0.84375 0.85304 1.90762 1.38632 1.28269 1.86846 1.45578 1.53119 1.32229 1.03977 1.21888 0.92604 0.96395 0.84661 0.90732 1.21620 0.95256 0.95834 0.84915 1.44700 1.02076 1.85116 1.03437 1.20020 0.86486 1.37663 1.03667 0.91881 1.27118 1.04013 0.97064 0.99154 1.70898 1.30197 1.17918 1.39607 0.82928 0.72178 0.74938 0.76476 1.21746 1.21252 1.19142 1.21640 0.83838 0.98414 0.95449 1.22358 0.94917 1.01959 0.91610 0.88061 1.21698 0.95574 0.97998 1.03408 1.20588 1.01110 0.93538 0.89009 1.21466 1.13044 0.95823 0.98279 1.24238 0.99381 0.97892 0.93710 1.77240 1.23774 0.96431 1.17461 1.48715 1.50360 1.07908 1.08860 1.22236 1.05250 0.73326 1.04532 0.92308 0.89542 0.88337 0.74408 0.98405 0.97216 0.93523 0.95590 0.94999 0.90316 0.90442 0.93540 0.84406 0.78074 0.88236 0.89062 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.07 71.98 0.65 -0.91 16 2 C -0.04 -0.72 2.92 -12.28 -0.04 -0.76 16 3 H 0.13 1.94 6.94 -2.39 -0.02 1.93 16 4 C 0.51 15.13 7.08 87.66 0.62 15.75 16 5 O -0.57 -23.01 13.48 -3.05 -0.04 -23.05 16 6 N -0.70 -18.21 5.12 -435.98 -2.23 -20.44 16 7 C 0.15 5.32 2.76 46.38 0.13 5.45 16 8 H 0.07 2.97 7.64 -2.39 -0.02 2.96 16 9 C 0.15 7.43 4.99 86.85 0.43 7.86 16 10 N -0.63 -32.85 3.29 -691.93 -2.28 -35.13 16 11 C -0.35 -20.66 10.02 84.03 0.84 -19.82 16 12 H 0.06 3.66 7.97 -2.91 -0.02 3.64 16 13 C -0.08 -4.65 5.09 84.86 0.43 -4.22 16 14 N -0.94 -60.44 12.93 21.65 0.28 -60.16 16 15 Si 1.11 53.81 30.00 68.60 2.06 55.87 16 16 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 17 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 C 0.13 5.25 6.85 86.73 0.59 5.84 16 20 C -0.09 -2.56 3.15 -9.60 -0.03 -2.59 16 21 H 0.10 2.43 8.00 -2.38 -0.02 2.42 16 22 C -0.13 -2.72 9.17 71.98 0.66 -2.06 16 23 C 0.09 2.26 5.73 41.41 0.24 2.50 16 24 C -0.26 -7.82 9.14 21.99 0.20 -7.62 16 25 C 0.03 0.90 12.03 85.24 1.02 1.93 16 26 N -0.33 -9.59 12.58 -57.02 -0.72 -10.31 16 27 N -0.37 -9.32 4.01 -356.03 -1.43 -10.75 16 28 C 0.09 1.24 11.27 127.77 1.44 2.68 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 0.66 7.56 -2.39 -0.02 0.65 16 32 H 0.42 7.19 7.94 -92.71 -0.74 6.45 16 33 H 0.00 -0.16 7.95 -2.38 -0.02 -0.17 16 34 H 0.01 0.52 6.81 -2.39 -0.02 0.51 16 35 H 0.25 16.38 6.06 -92.71 -0.56 15.82 16 36 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.03 1.26 7.78 -2.39 -0.02 1.24 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.05 1.10 8.08 -2.39 -0.02 1.08 16 41 H 0.14 4.55 6.80 -2.91 -0.02 4.53 16 42 H 0.20 4.37 8.06 -2.91 -0.02 4.35 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.10 1.08 6.97 -2.39 -0.02 1.06 16 Total: -1.00 -86.65 363.56 3.30 -83.35 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.46 Total: 16.58 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 7.20 Total: 4.03 kcal Atomic # 7 Polarization: -130.40 SS G_CDS: -6.38 Total: -136.78 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.04 Total: -23.05 kcal Atomic # 14 Polarization: 53.81 SS G_CDS: 2.06 Total: 55.87 kcal Total: -86.65 3.30 -83.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079716302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.379 kcal (2) G-P(sol) polarization free energy of solvation -86.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds