Wall clock time and date at job start Fri Apr 10 2020 21:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46926 * 2 1 4 4 C 1.52990 * 109.47077 * 239.99563 * 2 1 3 5 5 N 1.46507 * 109.47187 * 185.00039 * 4 2 1 6 6 C 1.36933 * 120.00466 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99805 * 0.02562 * 6 5 4 8 8 C 1.38805 * 120.00083 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00186 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00235 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47742 * 89.99665 * 10 8 6 12 12 H 1.48503 * 109.47523 * 210.00049 * 10 8 6 13 13 H 1.48508 * 109.47180 * 329.99599 * 10 8 6 14 14 N 1.46501 * 109.46604 * 119.99398 * 2 1 3 15 15 C 1.46505 * 119.99892 * 60.00766 * 14 2 1 16 16 C 1.34773 * 120.00070 * 239.99843 * 14 2 1 17 17 O 1.21283 * 120.00062 * 0.02562 * 16 14 2 18 18 C 1.50701 * 120.00060 * 180.02562 * 16 14 2 19 19 H 1.09002 * 109.43294 * 60.00140 * 18 16 14 20 20 C 1.53113 * 109.43131 * 179.90497 * 18 16 14 21 21 C 1.53497 * 109.30865 * 189.93457 * 20 18 16 22 22 C 1.50720 * 108.05551 * 311.29260 * 21 20 18 23 23 C 1.33854 * 128.68085 * 195.74243 * 22 21 20 24 24 N 1.34423 * 107.79866 * 179.91127 * 23 22 21 25 25 C 1.30791 * 109.32159 * 0.02562 * 24 23 22 26 26 N 1.34408 * 108.54887 * 0.06418 * 25 24 23 27 27 C 1.46474 * 128.44131 * 179.80719 * 26 25 24 28 28 H 1.09000 * 109.47215 * 300.00220 * 1 2 3 29 29 H 1.09003 * 109.46759 * 60.00279 * 1 2 3 30 30 H 1.08995 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47621 * 304.99968 * 4 2 1 32 32 H 1.09003 * 109.47421 * 65.00582 * 4 2 1 33 33 H 0.97002 * 119.99240 * 0.02562 * 5 4 2 34 34 H 0.96993 * 120.00464 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.46350 * 269.99403 * 15 14 2 36 36 H 1.08997 * 109.47141 * 29.99035 * 15 14 2 37 37 H 1.08996 * 109.47222 * 149.99850 * 15 14 2 38 38 H 1.09002 * 109.50354 * 309.88389 * 20 18 16 39 39 H 1.08997 * 109.50185 * 69.98443 * 20 18 16 40 40 H 1.08993 * 109.74468 * 70.93389 * 21 20 18 41 41 H 1.08996 * 109.74765 * 191.60866 * 21 20 18 42 42 H 1.08004 * 126.10559 * 359.86960 * 23 22 21 43 43 H 1.07999 * 125.72408 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.59519 * 77.57941 * 27 26 25 45 45 H 1.09002 * 109.59788 * 317.10627 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.1840 -1.4380 -2.2070 7 1 3.6470 -1.8426 -3.0523 8 6 5.5674 -1.5371 -2.1516 9 7 6.2248 -2.1245 -3.1289 10 14 6.4962 -0.8369 -0.6900 11 1 6.6279 -1.8799 0.3589 12 1 7.8470 -0.3994 -1.1252 13 1 5.7523 0.3256 -0.1415 14 7 2.0183 -0.6905 1.1963 15 6 1.6644 -2.0931 1.4281 16 6 2.7931 -0.0355 2.0834 17 8 3.0858 1.1257 1.8916 18 6 3.2958 -0.7460 3.3137 19 1 3.9014 -1.6020 3.0161 20 6 4.1481 0.2166 4.1452 21 6 4.8590 -0.5666 5.2577 22 6 3.8352 -1.4306 5.9483 23 6 3.9254 -2.0518 7.1305 24 7 2.7696 -2.7052 7.3406 25 6 1.9696 -2.5069 6.3250 26 7 2.5964 -1.7192 5.4344 27 6 2.1029 -1.2308 4.1447 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6055 -1.7198 -1.2950 32 1 1.7518 -0.1584 -2.1369 33 1 3.9824 -0.4628 -0.4314 34 1 7.1915 -2.1941 -3.0900 35 1 0.7375 -2.1442 1.9994 36 1 1.5295 -2.5968 0.4710 37 1 2.4628 -2.5818 1.9866 38 1 4.8901 0.6923 3.5040 39 1 3.5079 0.9789 4.5891 40 1 5.6390 -1.1936 4.8259 41 1 5.2990 0.1277 5.9735 42 1 4.7754 -2.0323 7.7965 43 1 0.9729 -2.9092 6.2194 44 1 1.4114 -0.4042 4.3072 45 1 1.5939 -2.0384 3.6184 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698835081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:47:12 Heat of formation + Delta-G solvation = 23.976936 kcal Electronic energy + Delta-G solvation = -26460.628072 eV Core-core repulsion = 22899.841050 eV Total energy + Delta-G solvation = -3560.787021 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.35025 -41.43567 -38.30610 -37.24824 -36.02803 -34.14429 -33.70328 -32.52524 -31.24693 -28.81088 -28.04639 -27.63062 -25.80622 -24.43019 -23.86633 -22.43177 -22.08020 -20.52925 -19.98532 -19.56248 -18.48291 -18.18238 -17.23097 -16.76136 -16.70508 -16.43306 -15.92670 -15.39454 -15.23569 -14.97503 -14.94888 -14.80307 -14.71252 -14.26603 -14.17366 -13.98425 -13.77417 -13.58201 -13.24369 -13.14954 -12.98849 -12.88365 -12.72993 -12.44707 -12.28686 -12.19284 -12.02493 -11.90501 -11.80160 -11.09920 -11.02320 -10.82741 -10.49336 -9.70351 -9.34538 -9.30131 -8.09409 -5.40775 1.10193 1.24689 1.31273 1.36927 1.38187 1.71566 1.97283 2.19375 2.38927 3.16928 3.22523 3.28863 3.46622 3.58190 3.70346 3.88669 3.93166 4.03921 4.07865 4.14840 4.18159 4.26331 4.28849 4.37176 4.43002 4.53379 4.63272 4.72300 4.78023 4.82621 4.85231 4.90808 4.98554 5.00478 5.06277 5.11801 5.30214 5.39148 5.52815 5.70986 5.76633 6.15330 6.27375 6.29961 7.01324 7.01974 7.10570 7.79135 7.95985 9.12180 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.004813 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.821161 B = 5816.519786 C = 6841.196365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.127 3.873 3 H 0.074 0.926 4 C 0.142 3.858 5 N -0.756 5.756 6 C -0.228 4.228 7 H 0.065 0.935 8 C -0.054 4.054 9 N -0.978 5.978 10 Si 0.938 3.062 11 H -0.270 1.270 12 H -0.294 1.294 13 H -0.273 1.273 14 N -0.597 5.597 15 C 0.061 3.939 16 C 0.515 3.485 17 O -0.574 6.574 18 C -0.117 4.117 19 H 0.106 0.894 20 C -0.104 4.104 21 C -0.041 4.041 22 C -0.031 4.031 23 C -0.043 4.043 24 N -0.535 5.535 25 C 0.189 3.811 26 N -0.456 5.456 27 C 0.115 3.885 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.360 0.640 34 H 0.258 0.742 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.178 0.822 43 H 0.240 0.760 44 H 0.099 0.901 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.678 1.020 18.754 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 H 0.093 0.907 4 C 0.015 3.985 5 N -0.402 5.402 6 C -0.359 4.359 7 H 0.083 0.917 8 C -0.246 4.246 9 N -0.629 5.629 10 Si 0.767 3.233 11 H -0.196 1.196 12 H -0.220 1.220 13 H -0.199 1.199 14 N -0.328 5.328 15 C -0.080 4.080 16 C 0.303 3.697 17 O -0.454 6.454 18 C -0.138 4.138 19 H 0.124 0.876 20 C -0.142 4.142 21 C -0.080 4.080 22 C -0.145 4.145 23 C -0.189 4.189 24 N -0.254 5.254 25 C -0.093 4.093 26 N -0.139 5.139 27 C -0.007 4.007 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.193 0.807 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.195 0.805 43 H 0.256 0.744 44 H 0.117 0.883 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.804 1.066 18.997 23.507 hybrid contribution 1.451 0.833 -0.550 1.761 sum -12.352 1.899 18.447 22.282 Atomic orbital electron populations 1.21957 0.90820 1.03929 1.03322 1.21350 0.96516 0.96524 0.83244 0.90748 1.21243 0.82726 0.98642 0.95841 1.42709 1.03463 1.70621 1.23371 1.19067 0.90005 1.27645 0.99158 0.91688 1.25301 0.97241 1.01881 1.00213 1.69839 1.07474 1.50884 1.34733 0.85654 0.78239 0.78796 0.80625 1.19610 1.22047 1.19880 1.47918 1.49687 1.13508 1.21720 1.22254 1.02061 0.79775 1.03912 1.20635 0.77783 0.86515 0.84791 1.90700 1.58350 1.18706 1.77604 1.21566 0.98502 1.00523 0.93258 0.87564 1.21455 0.99164 0.97035 0.96539 1.20272 0.94486 0.96718 0.96483 1.21380 0.89247 1.06351 0.97569 1.22098 0.98158 1.01585 0.97089 1.70483 1.03840 1.24795 1.26281 1.25497 1.01261 0.96618 0.85915 1.45485 1.13239 1.38125 1.17078 1.22227 0.95140 1.02454 0.80851 0.91310 0.90433 0.90184 0.93630 0.94720 0.80712 0.93299 0.88209 0.90390 0.90674 0.91275 0.90939 0.89543 0.87397 0.80450 0.74378 0.88280 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.19 71.98 0.66 -1.83 16 2 C 0.13 3.47 2.80 44.99 0.13 3.59 16 3 H 0.07 2.47 6.90 -2.39 -0.02 2.46 16 4 C 0.14 4.94 5.50 86.37 0.48 5.41 16 5 N -0.76 -34.97 5.24 -343.46 -1.80 -36.76 16 6 C -0.23 -12.82 10.47 84.03 0.88 -11.94 16 7 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 8 C -0.05 -3.21 5.50 84.86 0.47 -2.75 16 9 N -0.98 -62.43 13.97 21.65 0.30 -62.12 16 10 Si 0.94 46.90 27.74 68.60 1.90 48.80 16 11 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 13 H -0.27 -13.48 6.52 99.48 0.65 -12.83 16 14 N -0.60 -14.64 2.24 -822.60 -1.85 -16.49 16 15 C 0.06 1.03 7.84 127.77 1.00 2.03 16 16 C 0.52 14.37 6.76 87.66 0.59 14.96 16 17 O -0.57 -20.96 15.14 -3.04 -0.05 -21.00 16 18 C -0.12 -2.49 1.72 -11.42 -0.02 -2.51 16 19 H 0.11 2.36 7.37 -2.39 -0.02 2.34 16 20 C -0.10 -2.28 4.69 30.80 0.14 -2.14 16 21 C -0.04 -0.76 6.31 30.02 0.19 -0.57 16 22 C -0.03 -0.63 6.57 40.73 0.27 -0.37 16 23 C -0.04 -0.96 11.84 83.30 0.99 0.03 16 24 N -0.54 -12.82 11.27 -200.97 -2.26 -15.08 16 25 C 0.19 3.32 12.66 180.38 2.28 5.61 16 26 N -0.46 -8.08 3.13 -514.91 -1.61 -9.69 16 27 C 0.12 1.65 5.79 86.47 0.50 2.15 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.11 7.67 -2.39 -0.02 1.09 16 31 H 0.05 1.48 6.88 -2.39 -0.02 1.46 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.36 16.96 4.93 -92.71 -0.46 16.50 16 34 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.10 0.82 7.16 -2.39 -0.02 0.81 16 36 H 0.08 1.50 6.53 -2.39 -0.02 1.49 16 37 H 0.07 1.21 5.89 -2.39 -0.01 1.20 16 38 H 0.07 1.81 7.77 -2.39 -0.02 1.79 16 39 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 40 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 43 H 0.24 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.10 1.29 8.12 -2.39 -0.02 1.27 16 45 H 0.13 1.19 4.85 -2.39 -0.01 1.18 16 Total: -1.00 -79.33 352.51 3.68 -75.66 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.48 Total: 25.00 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 8.56 Total: 11.69 kcal Atomic # 7 Polarization: -132.93 SS G_CDS: -7.22 Total: -140.15 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.05 Total: -21.00 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.90 Total: 48.80 kcal Total: -79.33 3.68 -75.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698835081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.634 kcal (2) G-P(sol) polarization free energy of solvation -79.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds