Wall clock time and date at job start Fri Apr 10 2020 21:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47466 * 2 1 4 4 C 1.50699 * 109.47211 * 119.99989 * 2 1 3 5 5 N 1.32161 * 120.53925 * 294.85388 * 4 2 1 6 6 C 1.31856 * 120.96941 * 179.97438 * 5 4 2 7 7 N 1.31874 * 122.09542 * 359.97438 * 6 5 4 8 8 C 1.32132 * 120.97008 * 0.02562 * 7 6 5 9 9 C 1.39935 * 120.53983 * 114.82437 * 4 2 1 10 10 C 1.47836 * 120.93506 * 0.02562 * 9 4 2 11 11 O 1.21545 * 120.00253 * 306.54562 * 10 9 4 12 12 N 1.34777 * 119.99575 * 126.55026 * 10 9 4 13 13 C 1.46499 * 120.00345 * 4.40578 * 12 10 9 14 14 C 1.46501 * 119.99751 * 184.40328 * 12 10 9 15 15 C 1.52997 * 109.47244 * 90.00136 * 14 12 10 16 16 H 1.09007 * 109.47136 * 295.00199 * 15 14 12 17 17 C 1.52997 * 109.47198 * 174.99915 * 15 14 12 18 18 N 1.46503 * 109.47050 * 54.99967 * 15 14 12 19 19 C 1.36936 * 119.99752 * 205.00446 * 18 15 14 20 20 H 1.08000 * 120.00571 * 359.97438 * 19 18 15 21 21 C 1.38813 * 119.99663 * 180.02562 * 19 18 15 22 22 N 1.31617 * 120.00183 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99961 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47112 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47455 * 119.99924 * 23 21 19 26 26 H 1.48506 * 109.46911 * 239.99817 * 23 21 19 27 27 H 1.08993 * 109.46887 * 300.00039 * 1 2 3 28 28 H 1.09005 * 109.46593 * 60.00047 * 1 2 3 29 29 H 1.08998 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47063 * 239.99977 * 2 1 3 31 31 H 1.08998 * 109.47355 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47284 * 300.00132 * 3 2 1 33 33 H 1.09003 * 109.46998 * 59.99937 * 3 2 1 34 34 H 1.08003 * 118.94758 * 179.72053 * 6 5 4 35 35 H 1.07998 * 120.54130 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47432 * 84.33026 * 13 12 10 37 37 H 1.08997 * 109.47133 * 204.33202 * 13 12 10 38 38 H 1.08999 * 109.47256 * 324.33274 * 13 12 10 39 39 H 1.09006 * 109.46950 * 210.00239 * 14 12 10 40 40 H 1.09001 * 109.47331 * 329.99875 * 14 12 10 41 41 H 1.09004 * 109.46810 * 179.97438 * 17 15 14 42 42 H 1.08995 * 109.47072 * 299.99823 * 17 15 14 43 43 H 1.09002 * 109.47091 * 60.00183 * 17 15 14 44 44 H 0.96999 * 120.00322 * 24.99941 * 18 15 14 45 45 H 0.97003 * 120.00544 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.8052 -0.2122 2.4333 6 6 2.2403 -0.8270 3.5156 7 7 2.9164 -1.9576 3.4552 8 6 3.1884 -2.5260 2.2938 9 6 2.7464 -1.9086 1.1180 10 6 3.0257 -2.5055 -0.2053 11 8 2.1150 -2.7123 -0.9832 12 7 4.2903 -2.8205 -0.5491 13 6 5.3748 -2.6617 0.4229 14 6 4.5802 -3.3218 -1.8948 15 6 4.8934 -2.1449 -2.8209 16 1 4.0054 -1.5223 -2.9302 17 6 5.3173 -2.6741 -4.1924 18 7 5.9809 -1.3482 -2.2474 19 6 6.1053 -0.0241 -2.5739 20 1 5.4020 0.4327 -3.2544 21 6 7.1360 0.7307 -2.0309 22 7 7.9934 0.1739 -1.2020 23 14 7.3061 2.5367 -2.4767 24 1 6.2248 2.9176 -3.4205 25 1 7.2034 3.3621 -1.2465 26 1 8.6258 2.7661 -3.1179 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.0401 -0.3884 4.4820 35 1 3.7422 -3.4522 2.2525 36 1 5.4268 -3.5466 1.0572 37 1 6.3203 -2.5369 -0.1049 38 1 5.1844 -1.7834 1.0396 39 1 5.4391 -3.9919 -1.8556 40 1 3.7141 -3.8632 -2.2753 41 1 5.5400 -1.8356 -4.8524 42 1 6.2053 -3.2966 -4.0831 43 1 4.5082 -3.2669 -4.6191 44 1 6.6128 -1.7585 -1.6365 45 1 8.7139 0.7012 -0.8228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755617188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:47:53 Heat of formation + Delta-G solvation = 21.987009 kcal Electronic energy + Delta-G solvation = -26729.868078 eV Core-core repulsion = 23168.994767 eV Total energy + Delta-G solvation = -3560.873311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.39043 -39.34720 -36.57824 -35.88659 -34.38581 -33.05865 -32.20450 -31.39869 -28.89482 -26.98714 -26.97900 -26.29583 -24.89763 -24.38627 -23.49846 -20.82435 -20.46132 -19.40853 -17.96813 -17.33650 -17.04949 -16.68156 -16.01608 -15.16599 -14.89341 -14.63681 -14.47339 -14.10282 -13.98137 -13.60025 -13.56912 -13.29949 -13.01001 -12.61906 -12.32422 -12.19020 -12.04175 -11.87420 -11.64322 -11.47790 -11.44105 -11.34398 -11.17188 -10.91366 -10.77997 -10.70486 -10.51807 -10.42128 -10.07730 -9.76613 -9.67671 -9.43002 -9.28058 -8.98913 -8.30500 -7.00665 -5.83306 -3.10163 0.60164 1.00045 2.73046 3.22102 3.38600 3.45895 3.46782 3.71807 3.95906 4.05407 4.28633 4.52463 4.55125 4.89033 5.14783 5.17975 5.27793 5.40926 5.43673 5.44231 5.49533 5.57315 5.70840 5.73190 5.81118 5.81469 5.97801 6.03925 6.04963 6.12477 6.19998 6.20684 6.25268 6.28707 6.39680 6.49545 6.61709 6.69470 6.79499 6.86658 7.07028 7.55585 7.67645 7.98213 8.27681 8.36284 9.47660 10.02875 10.38334 11.39647 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.011794 B = 0.005720 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.435752 B = 4894.186435 C = 5519.177020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.055 4.055 3 C -0.141 4.141 4 C 0.236 3.764 5 N -0.515 5.515 6 C 0.305 3.695 7 N -0.526 5.526 8 C 0.180 3.820 9 C -0.223 4.223 10 C 0.571 3.429 11 O -0.534 6.534 12 N -0.584 5.584 13 C 0.080 3.920 14 C 0.109 3.891 15 C 0.154 3.846 16 H 0.051 0.949 17 C -0.162 4.162 18 N -0.720 5.720 19 C -0.230 4.230 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.934 5.934 23 Si 0.901 3.099 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.198 0.802 35 H 0.171 0.829 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.038 0.962 44 H 0.381 0.619 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 -5.828 6.005 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.074 4.074 3 C -0.198 4.198 4 C 0.089 3.911 5 N -0.228 5.228 6 C 0.018 3.982 7 N -0.240 5.240 8 C 0.013 3.987 9 C -0.230 4.230 10 C 0.357 3.643 11 O -0.412 6.412 12 N -0.314 5.314 13 C -0.063 4.063 14 C -0.014 4.014 15 C 0.044 3.956 16 H 0.069 0.931 17 C -0.223 4.223 18 N -0.363 5.363 19 C -0.361 4.361 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.584 5.584 23 Si 0.732 3.268 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.215 0.785 35 H 0.188 0.812 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.216 0.784 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.005 -5.361 6.435 13.829 hybrid contribution 0.906 0.589 -0.679 1.276 sum -10.099 -4.772 5.756 12.565 Atomic orbital electron populations 1.21699 0.92997 1.02064 1.02272 1.20349 0.97031 0.96859 0.93157 1.21779 1.01881 0.93850 1.02319 1.21796 0.86796 0.88621 0.93855 1.68250 1.21937 1.34088 0.98568 1.25103 0.88161 0.87394 0.97578 1.68408 1.15145 1.12021 1.28432 1.23440 0.91059 0.97804 0.86416 1.21642 1.04867 0.99877 0.96646 1.17741 0.83048 0.78083 0.85459 1.90758 1.44261 1.54047 1.52170 1.47532 1.06458 1.63401 1.13999 1.21969 0.91680 1.00124 0.92510 1.21948 1.01276 0.96898 0.81311 1.20660 0.92588 0.91424 0.90954 0.93100 1.22365 0.99832 1.00726 0.99350 1.42463 1.31193 1.07968 1.54680 1.19249 1.09190 0.86055 1.21656 0.91325 1.24651 0.98145 0.97943 1.00056 1.69626 1.18180 1.35383 1.35165 0.86207 0.77435 0.85604 0.77547 1.20581 1.21976 1.21922 0.92065 0.91748 0.92601 0.88059 0.92037 0.91797 0.91788 0.78537 0.81158 0.93277 0.88703 0.91656 0.90562 0.89748 0.92498 0.93414 0.94249 0.78416 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.15 37.16 0.34 -1.39 16 2 C -0.05 -0.84 2.90 -91.77 -0.27 -1.11 16 3 C -0.14 -2.11 9.06 37.16 0.34 -1.77 16 4 C 0.24 3.71 5.52 -81.82 -0.45 3.25 16 5 N -0.51 -7.46 9.99 -10.48 -0.10 -7.57 16 6 C 0.30 3.86 12.27 -92.03 -1.13 2.73 16 7 N -0.53 -7.05 10.42 -14.25 -0.15 -7.19 16 8 C 0.18 2.41 9.26 -16.78 -0.16 2.26 16 9 C -0.22 -3.47 4.74 -104.69 -0.50 -3.96 16 10 C 0.57 9.65 6.34 -12.33 -0.08 9.57 16 11 O -0.53 -10.08 15.14 5.33 0.08 -10.00 16 12 N -0.58 -9.40 2.73 -182.70 -0.50 -9.90 16 13 C 0.08 1.21 8.71 59.85 0.52 1.73 16 14 C 0.11 1.73 5.06 -4.04 -0.02 1.71 16 15 C 0.15 2.95 3.20 -67.93 -0.22 2.73 16 16 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 17 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 18 N -0.72 -16.56 4.57 -53.42 -0.24 -16.80 16 19 C -0.23 -6.07 9.93 -15.06 -0.15 -6.22 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 23 Si 0.90 21.96 29.55 -169.99 -5.02 16.94 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 1.78 5.74 -51.93 -0.30 1.49 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.89 7.98 -51.93 -0.41 0.48 16 34 H 0.20 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.17 1.85 6.85 -52.49 -0.36 1.49 16 36 H 0.05 0.56 7.29 -51.93 -0.38 0.19 16 37 H 0.09 1.63 5.78 -51.93 -0.30 1.33 16 38 H 0.06 1.07 6.49 -51.93 -0.34 0.73 16 39 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 40 H 0.08 1.29 7.36 -51.93 -0.38 0.91 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.38 9.03 5.41 -40.82 -0.22 8.81 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -30.56 366.29 -8.08 -38.64 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.88 Total: 9.53 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -1.51 Total: 6.66 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -0.27 Total: -67.29 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.56 -8.08 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755617188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.628 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds