Wall clock time and date at job start Fri Apr 10 2020 21:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47466 * 2 1 4 4 C 1.50699 * 109.47211 * 119.99989 * 2 1 3 5 5 N 1.32161 * 120.53925 * 294.85388 * 4 2 1 6 6 C 1.31856 * 120.96941 * 179.97438 * 5 4 2 7 7 N 1.31874 * 122.09542 * 359.97438 * 6 5 4 8 8 C 1.32132 * 120.97008 * 0.02562 * 7 6 5 9 9 C 1.39935 * 120.53983 * 114.82437 * 4 2 1 10 10 C 1.47836 * 120.93506 * 0.02562 * 9 4 2 11 11 O 1.21545 * 120.00253 * 306.54562 * 10 9 4 12 12 N 1.34777 * 119.99575 * 126.55026 * 10 9 4 13 13 C 1.46499 * 120.00345 * 4.40578 * 12 10 9 14 14 C 1.46501 * 119.99751 * 184.40328 * 12 10 9 15 15 C 1.52997 * 109.47244 * 90.00136 * 14 12 10 16 16 H 1.09007 * 109.47136 * 295.00199 * 15 14 12 17 17 C 1.52997 * 109.47198 * 174.99915 * 15 14 12 18 18 N 1.46503 * 109.47050 * 54.99967 * 15 14 12 19 19 C 1.36936 * 119.99752 * 205.00446 * 18 15 14 20 20 H 1.08000 * 120.00571 * 359.97438 * 19 18 15 21 21 C 1.38813 * 119.99663 * 180.02562 * 19 18 15 22 22 N 1.31617 * 120.00183 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99961 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47112 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47455 * 119.99924 * 23 21 19 26 26 H 1.48506 * 109.46911 * 239.99817 * 23 21 19 27 27 H 1.08993 * 109.46887 * 300.00039 * 1 2 3 28 28 H 1.09005 * 109.46593 * 60.00047 * 1 2 3 29 29 H 1.08998 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47063 * 239.99977 * 2 1 3 31 31 H 1.08998 * 109.47355 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47284 * 300.00132 * 3 2 1 33 33 H 1.09003 * 109.46998 * 59.99937 * 3 2 1 34 34 H 1.08003 * 118.94758 * 179.72053 * 6 5 4 35 35 H 1.07998 * 120.54130 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47432 * 84.33026 * 13 12 10 37 37 H 1.08997 * 109.47133 * 204.33202 * 13 12 10 38 38 H 1.08999 * 109.47256 * 324.33274 * 13 12 10 39 39 H 1.09006 * 109.46950 * 210.00239 * 14 12 10 40 40 H 1.09001 * 109.47331 * 329.99875 * 14 12 10 41 41 H 1.09004 * 109.46810 * 179.97438 * 17 15 14 42 42 H 1.08995 * 109.47072 * 299.99823 * 17 15 14 43 43 H 1.09002 * 109.47091 * 60.00183 * 17 15 14 44 44 H 0.96999 * 120.00322 * 24.99941 * 18 15 14 45 45 H 0.97003 * 120.00544 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.8052 -0.2122 2.4333 6 6 2.2403 -0.8270 3.5156 7 7 2.9164 -1.9576 3.4552 8 6 3.1884 -2.5260 2.2938 9 6 2.7464 -1.9086 1.1180 10 6 3.0257 -2.5055 -0.2053 11 8 2.1150 -2.7123 -0.9832 12 7 4.2903 -2.8205 -0.5491 13 6 5.3748 -2.6617 0.4229 14 6 4.5802 -3.3218 -1.8948 15 6 4.8934 -2.1449 -2.8209 16 1 4.0054 -1.5223 -2.9302 17 6 5.3173 -2.6741 -4.1924 18 7 5.9809 -1.3482 -2.2474 19 6 6.1053 -0.0241 -2.5739 20 1 5.4020 0.4327 -3.2544 21 6 7.1360 0.7307 -2.0309 22 7 7.9934 0.1739 -1.2020 23 14 7.3061 2.5367 -2.4767 24 1 6.2248 2.9176 -3.4205 25 1 7.2034 3.3621 -1.2465 26 1 8.6258 2.7661 -3.1179 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.0401 -0.3884 4.4820 35 1 3.7422 -3.4522 2.2525 36 1 5.4268 -3.5466 1.0572 37 1 6.3203 -2.5369 -0.1049 38 1 5.1844 -1.7834 1.0396 39 1 5.4391 -3.9919 -1.8556 40 1 3.7141 -3.8632 -2.2753 41 1 5.5400 -1.8356 -4.8524 42 1 6.2053 -3.2966 -4.0831 43 1 4.5082 -3.2669 -4.6191 44 1 6.6128 -1.7585 -1.6365 45 1 8.7139 0.7012 -0.8228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755617188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:47:52 Heat of formation + Delta-G solvation = 3.979232 kcal Electronic energy + Delta-G solvation = -26730.648954 eV Core-core repulsion = 23168.994767 eV Total energy + Delta-G solvation = -3561.654187 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.51067 -40.62554 -38.02529 -37.11981 -35.88697 -34.34522 -33.81327 -32.64253 -30.67747 -28.29273 -28.13377 -27.54525 -26.05649 -25.87806 -25.10787 -22.09080 -21.82743 -20.76850 -19.30606 -19.03408 -18.34571 -17.77223 -17.35614 -16.65678 -16.38929 -15.89228 -15.77705 -15.68326 -15.18204 -15.09577 -14.92582 -14.63491 -14.13386 -13.95082 -13.85509 -13.66345 -13.30506 -13.13843 -13.08991 -12.85782 -12.78627 -12.73251 -12.57163 -12.50303 -12.35932 -12.17596 -11.98099 -11.83760 -11.64513 -11.57313 -11.05720 -10.92486 -10.60959 -10.37433 -9.64650 -8.94556 -7.93278 -5.17482 -0.49108 -0.10169 1.42412 1.44164 1.45186 1.52340 1.99432 2.54966 2.63078 2.87833 3.07844 3.20508 3.33918 3.41893 3.75786 3.87642 3.99735 4.06285 4.10270 4.16358 4.21607 4.38947 4.41176 4.54348 4.58794 4.67515 4.71128 4.72608 4.84164 4.85804 4.87347 4.94006 5.01836 5.13360 5.15957 5.23980 5.26934 5.31775 5.35348 5.53592 5.63714 5.76522 6.25892 6.32223 6.91571 6.98352 7.38259 8.11609 8.38867 9.29422 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.011794 B = 0.005720 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.435752 B = 4894.186435 C = 5519.177020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 C -0.132 4.132 4 C 0.222 3.778 5 N -0.524 5.524 6 C 0.307 3.693 7 N -0.530 5.530 8 C 0.189 3.811 9 C -0.246 4.246 10 C 0.571 3.429 11 O -0.560 6.560 12 N -0.585 5.585 13 C 0.086 3.914 14 C 0.115 3.885 15 C 0.152 3.848 16 H 0.024 0.976 17 C -0.152 4.152 18 N -0.724 5.724 19 C -0.226 4.226 20 H 0.061 0.939 21 C -0.063 4.063 22 N -0.959 5.959 23 Si 0.952 3.048 24 H -0.274 1.274 25 H -0.297 1.297 26 H -0.294 1.294 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.236 0.764 35 H 0.197 0.803 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.035 0.965 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.378 0.622 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.010 -6.581 6.875 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.190 4.190 4 C 0.075 3.925 5 N -0.238 5.238 6 C 0.021 3.979 7 N -0.244 5.244 8 C 0.022 3.978 9 C -0.253 4.253 10 C 0.358 3.642 11 O -0.440 6.440 12 N -0.315 5.315 13 C -0.057 4.057 14 C -0.008 4.008 15 C 0.042 3.958 16 H 0.042 0.958 17 C -0.213 4.213 18 N -0.366 5.366 19 C -0.358 4.358 20 H 0.079 0.921 21 C -0.256 4.256 22 N -0.610 5.610 23 Si 0.783 3.217 24 H -0.199 1.199 25 H -0.225 1.225 26 H -0.221 1.221 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.252 0.748 35 H 0.214 0.786 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.212 0.788 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.693 -6.128 7.289 15.080 hybrid contribution 1.061 0.799 -0.935 1.624 sum -10.632 -5.329 6.354 13.484 Atomic orbital electron populations 1.21631 0.91176 1.01915 1.03365 1.20294 0.98527 0.96452 0.92272 1.21705 0.99711 0.94163 1.03430 1.21887 0.87125 0.89004 0.94447 1.68297 1.22610 1.34409 0.98488 1.25916 0.86676 0.86905 0.98452 1.68530 1.15419 1.12353 1.28072 1.23830 0.90138 0.98197 0.85670 1.21626 1.06419 1.00562 0.96692 1.17948 0.82894 0.77584 0.85817 1.90729 1.45022 1.55124 1.53148 1.47609 1.06526 1.63124 1.14207 1.21962 0.90061 1.01397 0.92252 1.21900 1.02611 0.95654 0.80661 1.20805 0.90317 0.91884 0.92770 0.95761 1.22209 1.01224 1.00324 0.97494 1.42532 1.32029 1.07272 1.54813 1.19431 1.08306 0.87590 1.20470 0.92082 1.25214 0.98570 1.00964 1.00880 1.69734 1.18694 1.36168 1.36402 0.85388 0.77210 0.82111 0.77033 1.19854 1.22475 1.22146 0.91098 0.90457 0.93317 0.90873 0.95142 0.90688 0.90625 0.74817 0.78622 0.89008 0.90850 0.93340 0.88212 0.88724 0.94600 0.92596 0.91285 0.78764 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.15 71.98 0.66 -2.49 16 2 C -0.06 -1.75 2.90 -11.54 -0.03 -1.78 16 3 C -0.13 -4.01 9.06 71.98 0.65 -3.36 16 4 C 0.22 6.91 5.52 42.92 0.24 7.15 16 5 N -0.52 -14.55 9.99 -187.06 -1.87 -16.42 16 6 C 0.31 7.11 12.27 180.84 2.22 9.32 16 7 N -0.53 -13.03 10.42 -198.98 -2.07 -15.10 16 8 C 0.19 4.74 9.26 85.07 0.79 5.53 16 9 C -0.25 -7.52 4.74 -19.91 -0.09 -7.61 16 10 C 0.57 19.19 6.34 86.78 0.55 19.74 16 11 O -0.56 -21.30 15.14 -3.86 -0.06 -21.36 16 12 N -0.59 -18.41 2.73 -850.22 -2.32 -20.73 16 13 C 0.09 2.50 8.71 127.77 1.11 3.61 16 14 C 0.11 3.51 5.06 86.38 0.44 3.94 16 15 C 0.15 5.77 3.20 44.99 0.14 5.91 16 16 H 0.02 1.05 8.08 -2.38 -0.02 1.03 16 17 C -0.15 -5.07 9.49 71.98 0.68 -4.38 16 18 N -0.72 -33.57 4.57 -322.94 -1.47 -35.04 16 19 C -0.23 -12.07 9.93 84.03 0.83 -11.23 16 20 H 0.06 3.30 7.83 -2.91 -0.02 3.28 16 21 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 22 N -0.96 -55.13 13.06 21.65 0.28 -54.85 16 23 Si 0.95 45.66 29.55 68.60 2.03 47.69 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 2.68 5.74 -2.39 -0.01 2.67 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 2.08 7.98 -2.39 -0.02 2.06 16 34 H 0.24 3.36 8.06 -2.91 -0.02 3.33 16 35 H 0.20 3.70 6.85 -2.91 -0.02 3.68 16 36 H 0.09 1.86 7.29 -2.39 -0.02 1.84 16 37 H 0.07 2.49 5.78 -2.39 -0.01 2.47 16 38 H 0.05 1.57 6.49 -2.39 -0.02 1.55 16 39 H 0.10 2.60 8.07 -2.38 -0.02 2.59 16 40 H 0.09 2.74 7.36 -2.39 -0.02 2.73 16 41 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.38 18.03 5.41 -92.71 -0.50 17.53 16 45 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -66.51 366.29 3.66 -62.85 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.49 Total: 31.64 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 8.65 Total: 21.31 kcal Atomic # 7 Polarization: -134.68 SS G_CDS: -7.46 Total: -142.13 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.06 Total: -21.36 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -66.51 3.66 -62.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755617188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.833 kcal (2) G-P(sol) polarization free energy of solvation -66.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds