Wall clock time and date at job start Fri Apr 10 2020 21:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47037 * 2 1 4 4 C 1.35409 * 126.44246 * 265.00037 * 3 2 1 5 5 C 1.35559 * 107.16346 * 179.97438 * 4 3 2 6 6 N 1.33107 * 108.34948 * 359.77836 * 5 4 3 7 7 C 1.31617 * 109.09256 * 0.37031 * 6 5 4 8 8 C 1.47411 * 125.86179 * 179.89335 * 7 6 5 9 9 O 1.21605 * 119.99995 * 179.68817 * 8 7 6 10 10 N 1.34776 * 119.99602 * 359.69326 * 8 7 6 11 11 C 1.46501 * 119.99779 * 179.72786 * 10 8 7 12 12 C 1.52998 * 109.47639 * 180.27341 * 11 10 8 13 13 H 1.09003 * 109.58161 * 60.10152 * 12 11 10 14 14 C 1.53185 * 109.59171 * 180.53237 * 12 11 10 15 15 C 1.53038 * 109.31644 * 174.41961 * 14 12 11 16 16 C 1.53042 * 109.53755 * 298.63941 * 15 14 12 17 17 C 1.53192 * 109.31645 * 61.36000 * 16 15 14 18 18 N 1.46926 * 108.77491 * 305.36985 * 17 16 15 19 19 C 1.36940 * 120.62832 * 233.58702 * 18 17 16 20 20 H 1.07999 * 120.00195 * 148.65187 * 19 18 17 21 21 C 1.38816 * 119.99544 * 328.64757 * 19 18 17 22 22 N 1.31617 * 120.00469 * 347.61760 * 21 19 18 23 23 Si 1.86802 * 119.99516 * 167.62176 * 21 19 18 24 24 H 1.48498 * 109.47348 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47226 * 120.00054 * 23 21 19 26 26 H 1.48500 * 109.47076 * 239.99970 * 23 21 19 27 27 H 1.08999 * 109.47507 * 59.99754 * 1 2 3 28 28 H 1.08995 * 109.47381 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47136 * 299.99681 * 1 2 3 30 30 H 1.08996 * 109.47136 * 240.00319 * 2 1 3 31 31 H 1.08993 * 109.47077 * 120.00266 * 2 1 3 32 32 H 1.08000 * 126.41664 * 0.02562 * 4 3 2 33 33 H 1.07993 * 125.82764 * 179.97438 * 5 4 3 34 34 H 0.96999 * 120.00415 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.46984 * 300.27307 * 11 10 8 36 36 H 1.08995 * 109.47415 * 60.26591 * 11 10 8 37 37 H 1.09005 * 109.49784 * 294.37467 * 14 12 11 38 38 H 1.09001 * 109.49953 * 54.46844 * 14 12 11 39 39 H 1.08996 * 109.46313 * 178.61317 * 15 14 12 40 40 H 1.09001 * 109.44753 * 58.65009 * 15 14 12 41 41 H 1.09007 * 109.49507 * 301.40933 * 16 15 14 42 42 H 1.09003 * 109.49770 * 181.31907 * 16 15 14 43 43 H 1.08999 * 109.58326 * 185.57897 * 17 16 15 44 44 H 1.09004 * 109.70192 * 65.22410 * 17 16 15 45 45 H 0.96998 * 120.00103 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3759 2.1079 -1.0852 5 6 2.7651 3.3275 -0.6393 6 7 2.6436 3.3475 0.6860 7 6 2.1980 2.1787 1.0952 8 6 1.9324 1.7973 2.4942 9 8 1.5147 0.6847 2.7522 10 7 2.1524 2.6817 3.4871 11 6 1.8828 2.3047 4.8768 12 6 2.2076 3.4829 5.7972 13 1 1.5874 4.3381 5.5285 14 6 1.9391 3.0871 7.2525 15 6 2.3962 4.2177 8.1771 16 6 3.9006 4.4414 8.0070 17 6 4.1913 4.8526 6.5602 18 7 3.6260 3.8400 5.6581 19 6 4.4062 3.2407 4.7056 20 1 4.2064 2.2224 4.4063 21 6 5.4539 3.9421 4.1248 22 7 5.5524 5.2428 4.3001 23 14 6.7239 3.0398 3.0941 24 1 6.3902 1.5934 3.0520 25 1 6.7225 3.5890 1.7144 26 1 8.0690 3.2196 3.6971 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.3542 1.7780 -2.1133 33 1 3.1113 4.1446 -1.2547 34 1 2.4859 3.5690 3.2812 35 1 0.8309 2.0393 4.9838 36 1 2.5024 1.4500 5.1483 37 1 0.8721 2.9126 7.3912 38 1 2.4909 2.1775 7.4899 39 1 2.1837 3.9489 9.2119 40 1 1.8619 5.1330 7.9227 41 1 4.4339 3.5191 8.2372 42 1 4.2297 5.2308 8.6828 43 1 5.2687 4.9169 6.4081 44 1 3.7348 5.8209 6.3546 45 1 6.2847 5.7328 3.8946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024412708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:49:24 Heat of formation + Delta-G solvation = 44.958967 kcal Electronic energy + Delta-G solvation = -26592.613092 eV Core-core repulsion = 23032.735920 eV Total energy + Delta-G solvation = -3559.877172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99830 -38.94892 -37.57665 -35.07826 -33.99858 -32.98801 -30.99316 -30.15406 -29.84784 -29.24404 -26.05724 -24.87607 -23.86739 -22.41153 -22.03971 -21.16062 -20.50009 -19.48674 -18.99250 -17.56217 -16.44891 -15.78882 -15.72318 -15.37124 -15.17068 -14.49907 -14.17606 -13.96667 -13.67761 -13.59413 -13.53166 -13.38211 -13.12079 -12.78456 -12.56593 -12.36849 -12.11574 -11.98355 -11.72188 -11.37459 -11.16125 -10.87530 -10.70477 -10.49439 -10.23997 -10.08356 -9.93128 -9.86379 -9.70405 -9.56959 -9.44832 -9.29121 -8.58286 -8.38367 -8.09738 -6.57010 -5.75448 -3.22015 1.71586 2.69730 2.95150 3.40621 3.49998 3.50587 3.79587 3.94083 4.52506 4.66176 4.76533 4.96978 5.03992 5.22828 5.28439 5.41160 5.45396 5.55314 5.56150 5.61473 5.68214 5.73019 5.78251 5.99685 6.02349 6.07547 6.16477 6.28679 6.38940 6.43186 6.43659 6.62290 6.75291 6.77474 6.84580 6.90027 7.00154 7.13506 7.15377 7.44569 7.72791 7.87225 8.00991 8.36912 8.49174 8.77782 9.25145 9.86018 10.43542 11.31910 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.005527 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.309052 B = 5064.393619 C = 6339.760760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.419 5.419 4 C -0.043 4.043 5 C -0.029 4.029 6 N -0.433 5.433 7 C 0.153 3.847 8 C 0.596 3.404 9 O -0.567 6.567 10 N -0.663 5.663 11 C 0.135 3.865 12 C 0.159 3.841 13 H 0.033 0.967 14 C -0.126 4.126 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.173 3.827 18 N -0.588 5.588 19 C -0.254 4.254 20 H 0.068 0.932 21 C 0.017 3.983 22 N -0.896 5.896 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.291 1.291 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.428 0.572 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.018 0.982 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.786 -6.072 -5.510 12.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.101 5.101 4 C -0.181 4.181 5 C -0.182 4.182 6 N -0.153 5.153 7 C -0.107 4.107 8 C 0.379 3.621 9 O -0.447 6.447 10 N -0.313 5.313 11 C 0.011 3.989 12 C 0.052 3.948 13 H 0.050 0.950 14 C -0.166 4.166 15 C -0.145 4.145 16 C -0.183 4.183 17 C 0.048 3.952 18 N -0.312 5.312 19 C -0.383 4.383 20 H 0.085 0.915 21 C -0.183 4.183 22 N -0.539 5.539 23 Si 0.723 3.277 24 H -0.206 1.206 25 H -0.214 1.214 26 H -0.218 1.218 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.195 0.805 33 H 0.191 0.809 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.036 0.964 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.834 -6.238 -4.797 11.831 hybrid contribution 0.893 -0.614 -1.406 1.775 sum -7.942 -6.852 -6.203 12.186 Atomic orbital electron populations 1.22043 0.93845 1.03007 1.02922 1.22041 0.96092 0.79261 1.05035 1.45267 1.45836 1.12727 1.06220 1.22783 1.08135 0.94333 0.92846 1.22420 1.07109 0.97365 0.91344 1.70362 1.14102 1.18776 1.12087 1.22885 1.09195 0.88159 0.90478 1.16454 0.78755 0.84794 0.82079 1.90714 1.49184 1.21019 1.83804 1.45780 1.62313 1.17917 1.05330 1.21382 0.99005 0.98605 0.79880 1.20737 0.88341 0.93932 0.91773 0.94951 1.21931 0.99222 0.98808 0.96640 1.21358 0.97359 0.98207 0.97554 1.22202 0.95012 1.00348 1.00772 1.20766 1.00283 0.89860 0.84289 1.44058 1.02994 1.47043 1.37089 1.19143 1.09765 0.95038 1.14347 0.91465 1.25011 1.00470 0.94843 0.97928 1.69985 1.31942 1.05391 1.46624 0.86367 0.81664 0.79322 0.80375 1.20596 1.21389 1.21760 0.92544 0.90677 0.91207 0.89491 0.87226 0.80540 0.80946 0.73223 0.92347 0.91257 0.93059 0.92075 0.93771 0.92864 0.92869 0.93585 0.89625 0.96365 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 10.23 37.16 0.38 -1.34 16 2 C 0.10 1.19 6.18 -4.04 -0.02 1.16 16 3 N -0.42 -6.44 2.76 -114.59 -0.32 -6.75 16 4 C -0.04 -0.58 11.53 -16.93 -0.20 -0.77 16 5 C -0.03 -0.46 11.85 -17.96 -0.21 -0.67 16 6 N -0.43 -8.62 10.90 -11.26 -0.12 -8.75 16 7 C 0.15 2.93 7.79 -154.52 -1.20 1.73 16 8 C 0.60 12.10 7.81 -12.53 -0.10 12.00 16 9 O -0.57 -11.62 14.51 5.27 0.08 -11.55 16 10 N -0.66 -13.75 3.84 -61.39 -0.24 -13.98 16 11 C 0.14 2.60 4.43 -4.04 -0.02 2.58 16 12 C 0.16 3.15 3.01 -67.60 -0.20 2.94 16 13 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 14 C -0.13 -2.13 5.37 -26.62 -0.14 -2.27 16 15 C -0.11 -1.77 5.88 -26.69 -0.16 -1.93 16 16 C -0.14 -2.71 6.08 -26.61 -0.16 -2.87 16 17 C 0.17 4.00 5.26 -3.71 -0.02 3.98 16 18 N -0.59 -13.78 2.97 -164.78 -0.49 -14.27 16 19 C -0.25 -6.57 6.96 -15.06 -0.10 -6.67 16 20 H 0.07 1.80 5.86 -52.49 -0.31 1.49 16 21 C 0.02 0.47 5.01 -17.43 -0.09 0.38 16 22 N -0.90 -25.25 11.15 55.49 0.62 -24.63 16 23 Si 0.89 22.39 29.57 -169.99 -5.03 17.36 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 30 H 0.09 0.78 8.13 -51.93 -0.42 0.35 16 31 H 0.11 1.54 6.64 -51.93 -0.34 1.20 16 32 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 34 H 0.43 9.74 7.07 -40.82 -0.29 9.45 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.43 7.42 -51.93 -0.39 1.04 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.09 2.23 6.16 -51.93 -0.32 1.91 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -30.65 357.52 -9.46 -40.11 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.11 Total: 8.83 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -2.25 Total: 8.24 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -0.55 Total: -68.39 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.65 -9.46 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024412708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.072 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds