Wall clock time and date at job start Fri Apr 10 2020 21:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34948 * 126.03512 * 2 1 4 4 C 1.35326 * 107.74175 * 180.14913 * 3 2 1 5 5 C 1.39870 * 107.92043 * 359.60844 * 4 3 2 6 6 C 1.50693 * 125.89860 * 180.22157 * 5 4 3 7 7 C 1.53002 * 109.47119 * 125.00387 * 6 5 4 8 8 C 1.50706 * 109.47075 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99653 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99805 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99613 * 179.97438 * 10 8 7 12 12 C 1.53042 * 109.46027 * 275.02765 * 11 10 8 13 13 C 1.53193 * 109.30995 * 178.60391 * 12 11 10 14 14 N 1.46928 * 108.76566 * 54.65780 * 13 12 11 15 15 C 1.36938 * 120.63069 * 126.40492 * 14 13 12 16 16 H 1.07997 * 120.00163 * 331.82185 * 15 14 13 17 17 C 1.38814 * 119.99874 * 151.82340 * 15 14 13 18 18 N 1.31625 * 120.00040 * 343.07520 * 17 15 14 19 19 Si 1.86804 * 120.00059 * 163.07297 * 17 15 14 20 20 H 1.48502 * 109.47088 * 89.99823 * 19 17 15 21 21 H 1.48493 * 109.47018 * 210.00105 * 19 17 15 22 22 H 1.48497 * 109.46843 * 330.00283 * 19 17 15 23 23 C 1.46928 * 118.73654 * 306.37997 * 14 13 12 24 24 C 1.53045 * 109.45859 * 154.97554 * 11 10 8 25 25 N 1.30837 * 108.20284 * 0.24201 * 5 4 3 26 26 H 1.09001 * 109.47298 * 270.26540 * 1 2 3 27 27 H 1.09003 * 109.47059 * 30.25524 * 1 2 3 28 28 H 1.08995 * 109.47628 * 150.26097 * 1 2 3 29 29 H 1.08000 * 126.13576 * 359.97438 * 3 2 1 30 30 H 1.07994 * 126.03598 * 179.87286 * 4 3 2 31 31 H 1.09001 * 109.47140 * 244.99710 * 6 5 4 32 32 H 1.08998 * 109.47342 * 4.99825 * 6 5 4 33 33 H 1.09001 * 109.46562 * 299.99677 * 7 6 5 34 34 H 1.08998 * 109.47472 * 59.99518 * 7 6 5 35 35 H 0.96998 * 120.00166 * 0.02562 * 10 8 7 36 36 H 1.08990 * 109.46294 * 35.00358 * 11 10 8 37 37 H 1.09002 * 109.49907 * 298.56647 * 12 11 10 38 38 H 1.08992 * 109.49962 * 58.66753 * 12 11 10 39 39 H 1.08999 * 109.59733 * 294.86441 * 13 12 11 40 40 H 1.09001 * 109.70215 * 174.50424 * 13 12 11 41 41 H 0.97000 * 119.99844 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.58820 * 293.81997 * 23 14 13 43 43 H 1.09001 * 109.69974 * 173.46746 * 23 14 13 44 44 H 1.09004 * 109.49451 * 301.34164 * 24 11 10 45 45 H 1.09006 * 109.49725 * 61.39676 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6665 -0.0034 5 6 3.5347 -0.7322 0.0036 6 6 4.7496 -1.6236 0.0076 7 6 4.6717 -2.5866 1.1940 8 6 5.8871 -3.4777 1.1984 9 8 6.7320 -3.3550 0.3370 10 7 6.0349 -4.4110 2.1594 11 6 7.2161 -5.2776 2.1632 12 6 6.9729 -6.4750 1.2417 13 6 8.2229 -7.3605 1.2211 14 7 8.5683 -7.7228 2.6025 15 6 8.7314 -9.0347 2.9597 16 1 8.1995 -9.8094 2.4276 17 6 9.5806 -9.3687 4.0058 18 7 10.4709 -8.4990 4.4341 19 14 9.4598 -11.0525 4.8056 20 1 10.3594 -12.0009 4.1009 21 1 9.8637 -10.9534 6.2311 22 1 8.0603 -11.5417 4.7205 23 6 8.7357 -6.6508 3.5932 24 6 7.4802 -5.7732 3.5870 25 7 2.2892 -1.1328 0.0056 26 1 -0.3634 0.0048 1.0277 27 1 -0.3633 0.8877 -0.5178 28 1 -0.3634 -0.8922 -0.5097 29 1 1.9282 2.1194 -0.0004 30 1 4.4211 1.2962 -0.0062 31 1 4.7852 -2.1934 -0.9210 32 1 5.6482 -1.0128 0.0937 33 1 4.6361 -2.0168 2.1226 34 1 3.7731 -3.1974 1.1079 35 1 5.3589 -4.5094 2.8480 36 1 8.0799 -4.7157 1.8083 37 1 6.1245 -7.0516 1.6105 38 1 6.7617 -6.1207 0.2329 39 1 9.0505 -6.8142 0.7688 40 1 8.0236 -8.2643 0.6453 41 1 11.0645 -8.7325 5.1649 42 1 9.6053 -6.0466 3.3343 43 1 8.8737 -7.0841 4.5838 44 1 7.6300 -4.9191 4.2475 45 1 6.6267 -6.3558 3.9336 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227577023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:48:17 Heat of formation + Delta-G solvation = 29.187901 kcal Electronic energy + Delta-G solvation = -24440.050675 eV Core-core repulsion = 20879.489618 eV Total energy + Delta-G solvation = -3560.561057 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.07738 -40.93372 -38.98916 -36.04605 -35.44614 -33.94327 -32.82610 -31.77325 -31.17560 -30.82930 -28.06963 -26.82877 -25.17550 -23.92735 -23.40355 -22.02523 -21.35235 -20.89306 -20.38308 -18.86536 -18.08204 -17.48101 -17.18324 -16.73694 -16.63238 -16.21266 -15.64310 -15.36264 -15.09582 -15.00787 -14.83527 -14.59285 -14.39371 -14.17830 -13.99477 -13.54249 -13.38124 -13.20261 -13.04687 -12.93807 -12.83236 -12.60988 -12.51553 -12.23319 -12.17884 -12.01899 -11.87283 -11.55433 -11.45634 -11.34747 -10.81219 -10.55812 -10.15484 -9.96444 -9.45138 -8.70680 -7.87963 -5.33677 0.98175 1.48179 1.49143 1.59489 1.70176 1.72410 1.82491 2.28986 2.51931 3.27849 3.57072 3.65875 3.80864 3.91074 3.95818 4.05304 4.19718 4.21544 4.34457 4.35880 4.46645 4.47452 4.65013 4.66150 4.71494 4.73192 4.82526 4.86486 4.89282 5.01390 5.05309 5.05708 5.12770 5.15862 5.21523 5.29839 5.47070 5.59372 5.64428 5.71155 5.72994 6.21752 6.38812 6.65183 6.79505 7.14245 7.33934 7.83705 8.36934 9.19194 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.038573 B = 0.002165 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.726006 B =12927.481427 C =13116.365416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.062 3.938 4 C -0.291 4.291 5 C 0.063 3.937 6 C -0.017 4.017 7 C -0.117 4.117 8 C 0.511 3.489 9 O -0.584 6.584 10 N -0.714 5.714 11 C 0.161 3.839 12 C -0.124 4.124 13 C 0.144 3.856 14 N -0.609 5.609 15 C -0.264 4.264 16 H 0.067 0.933 17 C -0.051 4.051 18 N -0.935 5.935 19 Si 0.970 3.030 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.269 1.269 23 C 0.178 3.822 24 C -0.128 4.128 25 N -0.333 5.333 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.214 0.786 30 H 0.159 0.841 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.413 0.587 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.007 0.993 40 H 0.057 0.943 41 H 0.251 0.749 42 H -0.006 1.006 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.873 21.052 -5.349 30.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.166 5.166 3 C -0.084 4.084 4 C -0.320 4.320 5 C -0.103 4.103 6 C -0.057 4.057 7 C -0.158 4.158 8 C 0.299 3.701 9 O -0.464 6.464 10 N -0.365 5.365 11 C 0.056 3.944 12 C -0.164 4.164 13 C 0.018 3.982 14 N -0.333 5.333 15 C -0.394 4.394 16 H 0.084 0.916 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.798 3.202 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.194 1.194 23 C 0.052 3.948 24 C -0.168 4.168 25 N -0.157 5.157 26 H 0.104 0.896 27 H 0.135 0.865 28 H 0.103 0.897 29 H 0.230 0.770 30 H 0.177 0.823 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.250 0.750 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.025 0.975 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.012 0.988 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.147 20.119 -5.835 30.485 hybrid contribution 0.827 -0.364 0.652 1.114 sum -21.320 19.755 -5.183 29.524 Atomic orbital electron populations 1.22175 0.72166 1.05810 1.04539 1.48892 1.07908 1.03492 1.56306 1.23166 0.90521 0.94799 0.99939 1.21753 0.98564 0.93916 1.17772 1.22391 0.93028 0.94964 0.99869 1.19636 0.92596 0.95235 0.98246 1.21519 0.95543 0.97324 1.01388 1.21197 0.88034 0.80434 0.80434 1.90690 1.45590 1.71445 1.38719 1.46104 1.24505 1.35425 1.30444 1.20629 0.87728 0.89909 0.96103 1.22167 0.98865 0.96377 0.98987 1.20967 0.94087 0.96756 0.86384 1.44352 1.81688 1.02793 1.04456 1.19505 1.19661 0.84623 1.15590 0.91559 1.25842 0.95410 1.01254 1.02138 1.70188 1.21135 1.37126 1.29687 0.85246 0.78019 0.79683 0.77289 1.21331 1.21688 1.19409 1.20568 0.92165 0.87859 0.94235 1.22253 1.00080 0.99557 0.94906 1.77235 1.01932 1.09743 1.26754 0.89648 0.86454 0.89733 0.76953 0.82320 0.91049 0.89217 0.86954 0.87676 0.75029 0.92427 0.91629 0.92271 0.97507 0.92463 0.93991 0.98753 0.91844 0.90456 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 11.47 127.77 1.47 2.06 16 2 N -0.38 -5.95 4.01 -369.55 -1.48 -7.44 16 3 C 0.06 0.77 11.49 83.54 0.96 1.73 16 4 C -0.29 -4.94 10.72 21.99 0.24 -4.70 16 5 C 0.06 1.34 6.49 43.10 0.28 1.62 16 6 C -0.02 -0.38 5.08 29.85 0.15 -0.23 16 7 C -0.12 -2.38 5.66 29.85 0.17 -2.22 16 8 C 0.51 14.26 7.79 87.66 0.68 14.94 16 9 O -0.58 -21.40 15.64 -3.03 -0.05 -21.44 16 10 N -0.71 -19.06 5.08 -442.40 -2.25 -21.31 16 11 C 0.16 5.60 2.42 45.02 0.11 5.71 16 12 C -0.12 -4.57 5.65 30.67 0.17 -4.40 16 13 C 0.14 6.43 6.52 86.36 0.56 6.99 16 14 N -0.61 -31.38 2.99 -699.10 -2.09 -33.47 16 15 C -0.26 -14.69 9.58 84.03 0.81 -13.89 16 16 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 17 C -0.05 -2.87 4.92 84.86 0.42 -2.46 16 18 N -0.94 -55.68 11.19 21.65 0.24 -55.44 16 19 Si 0.97 44.94 29.59 68.60 2.03 46.97 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 C 0.18 8.64 5.30 86.36 0.46 9.10 16 24 C -0.13 -4.65 5.55 30.67 0.17 -4.48 16 25 N -0.33 -7.49 12.54 -47.39 -0.59 -8.08 16 26 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.21 0.65 8.06 -2.91 -0.02 0.63 16 30 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 32 H 0.09 1.94 8.08 -2.39 -0.02 1.92 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.41 8.35 8.60 -92.71 -0.80 7.55 16 36 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 40 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 41 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 42 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 44 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 45 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -76.02 369.24 2.63 -73.40 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.18 Total: 17.02 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 6.64 Total: 9.79 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -6.17 Total: -125.74 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -76.02 2.63 -73.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227577023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.584 kcal (2) G-P(sol) polarization free energy of solvation -76.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds