Wall clock time and date at job start Fri Apr 10 2020 21:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 115.55744 * 2 1 4 4 C 1.53075 * 117.51541 * 214.29369 * 2 1 3 5 5 C 1.52999 * 59.98420 * 252.52477 * 4 2 1 6 6 H 1.09000 * 117.49612 * 252.49938 * 5 4 2 7 7 C 1.50698 * 117.49805 * 107.50629 * 5 4 2 8 8 O 1.21284 * 119.99666 * 291.24673 * 7 5 4 9 9 N 1.34775 * 120.00504 * 111.24952 * 7 5 4 10 10 C 1.46937 * 120.55451 * 179.97438 * 9 7 5 11 11 C 1.53342 * 108.68429 * 125.67365 * 10 9 7 12 12 C 1.52112 * 109.44151 * 53.30280 * 11 10 9 13 13 C 1.54370 * 110.55219 * 177.18780 * 12 11 10 14 14 C 1.54458 * 102.87254 * 276.69663 * 13 12 11 15 15 N 1.47080 * 107.30033 * 338.49509 * 14 13 12 16 16 C 1.36938 * 125.62732 * 179.04106 * 15 14 13 17 17 H 1.08003 * 120.00172 * 179.97438 * 16 15 14 18 18 C 1.38814 * 120.00264 * 359.96048 * 16 15 14 19 19 N 1.31621 * 119.99727 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00147 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47230 * 89.99929 * 20 18 16 22 22 H 1.48500 * 109.46866 * 210.00141 * 20 18 16 23 23 H 1.48502 * 109.46963 * 329.99849 * 20 18 16 24 24 C 1.47562 * 108.74397 * 359.00852 * 15 14 13 25 25 C 1.52108 * 111.60105 * 300.69168 * 12 11 10 26 26 C 1.46933 * 120.54799 * 0.02562 * 9 7 5 27 27 H 1.09000 * 109.47111 * 274.30967 * 1 2 3 28 28 H 1.08999 * 109.47352 * 34.31339 * 1 2 3 29 29 H 1.09004 * 109.46602 * 154.31009 * 1 2 3 30 30 H 1.08998 * 109.46625 * 205.68445 * 3 2 1 31 31 H 1.08994 * 109.47159 * 325.68565 * 3 2 1 32 32 H 1.09000 * 109.47091 * 85.69007 * 3 2 1 33 33 H 1.08997 * 117.48950 * 145.03038 * 4 2 1 34 34 H 1.09004 * 117.53136 * 359.97438 * 4 2 1 35 35 H 1.08992 * 109.59782 * 5.91357 * 10 9 7 36 36 H 1.09000 * 109.59990 * 245.43290 * 10 9 7 37 37 H 1.09000 * 109.47371 * 293.31887 * 11 10 9 38 38 H 1.08995 * 109.47855 * 173.29332 * 11 10 9 39 39 H 1.09001 * 110.73143 * 35.04622 * 13 12 11 40 40 H 1.09000 * 110.72852 * 158.35247 * 13 12 11 41 41 H 1.09004 * 109.87614 * 97.92524 * 14 13 12 42 42 H 1.09004 * 109.87753 * 218.91800 * 14 13 12 43 43 H 0.97002 * 119.99665 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.37804 * 264.49970 * 24 15 14 45 45 H 1.09000 * 110.38119 * 142.14175 * 24 15 14 46 46 H 1.09005 * 109.47537 * 179.29603 * 25 12 11 47 47 H 1.08999 * 109.47384 * 299.31186 * 25 12 11 48 48 H 1.09000 * 109.60188 * 354.08281 * 26 9 7 49 49 H 1.09000 * 109.59788 * 114.40116 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2372 -1.1216 -0.7649 5 6 2.2365 -1.1210 0.7651 6 1 3.1714 -0.8750 1.2687 7 6 1.3721 -2.1406 1.4609 8 8 0.1639 -2.0524 1.4026 9 7 1.9416 -3.1506 2.1480 10 6 1.1104 -4.1511 2.8314 11 6 1.5292 -5.5468 2.3536 12 6 3.0300 -5.7150 2.5356 13 6 3.4692 -7.1376 2.1277 14 6 3.1781 -7.9653 3.3989 15 7 3.1333 -7.0273 4.5309 16 6 2.8816 -7.3620 5.8346 17 1 2.8709 -6.5964 6.5963 18 6 2.6399 -8.6853 6.1774 19 7 2.6522 -9.6182 5.2490 20 14 2.2958 -9.1417 7.9558 21 1 0.8350 -9.0681 8.2120 22 1 2.7747 -10.5235 8.2137 23 1 3.0044 -8.1962 8.8554 24 6 3.4052 -5.6662 4.0299 25 6 3.8096 -4.6698 1.7524 26 6 3.4040 -3.2687 2.2270 27 1 -0.3633 0.0772 1.0248 28 1 -0.3634 0.8488 -0.5793 29 1 -0.3633 -0.9261 -0.4455 30 1 3.1823 1.3085 -0.4454 31 1 1.5812 2.0742 -0.5793 32 1 2.2772 1.7414 1.0248 33 1 3.1724 -0.8756 -1.2679 34 1 1.6128 -1.8599 -1.2679 35 1 0.0612 -3.9814 2.5898 36 1 1.2571 -4.0741 3.9087 37 1 1.2758 -5.6612 1.2997 38 1 1.0053 -6.3033 2.9378 39 1 2.8758 -7.4987 1.2877 40 1 4.5323 -7.1593 1.8882 41 1 2.2183 -8.4722 3.2993 42 1 3.9699 -8.6984 3.5532 43 1 2.4836 -10.5430 5.4886 44 1 4.4608 -5.4220 4.1483 45 1 2.7852 -4.9382 4.5532 46 1 4.8775 -4.8142 1.9169 47 1 3.5885 -4.7721 0.6900 48 1 3.8667 -2.5175 1.5870 49 1 3.7276 -3.1208 3.2573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035176708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:49:35 Heat of formation + Delta-G solvation = 10.565989 kcal Electronic energy + Delta-G solvation = -26620.522150 eV Core-core repulsion = 23162.693929 eV Total energy + Delta-G solvation = -3457.828220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.64928 -39.16268 -37.21865 -35.65180 -33.08733 -31.17812 -30.76166 -29.55229 -28.86497 -27.59174 -26.15049 -25.02783 -24.21379 -22.79345 -22.18135 -20.17449 -19.96069 -18.84400 -17.72040 -17.27093 -16.70505 -15.66835 -15.18012 -15.00098 -14.71797 -14.53930 -14.20651 -13.91398 -13.74818 -13.57595 -13.25780 -13.14503 -12.85988 -12.62089 -12.56958 -12.11956 -12.00895 -11.93835 -11.91268 -11.64634 -11.39475 -11.12093 -10.93969 -10.88160 -10.77364 -10.60593 -10.37992 -10.14535 -10.02877 -9.97526 -9.74130 -9.66279 -9.54191 -9.36101 -8.57644 -8.42188 -6.79654 -5.69297 -3.02192 2.52124 3.02522 3.40787 3.45953 3.47591 3.60192 4.34454 4.44920 4.51431 4.58904 4.82545 4.89851 4.94149 5.00767 5.13625 5.29689 5.35119 5.44225 5.46520 5.47707 5.51557 5.54734 5.65506 5.71062 5.72659 5.77208 5.83255 5.88339 5.89990 5.96150 5.99993 6.03545 6.14085 6.17274 6.29774 6.36472 6.39658 6.44120 6.56606 6.70661 6.75670 6.80269 6.97683 7.52498 7.58691 7.65842 7.85299 8.27714 8.28242 9.24518 9.85093 10.51760 11.42270 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.029056 B = 0.003190 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.431320 B = 8774.689637 C = 9098.972420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.097 4.097 3 C -0.116 4.116 4 C -0.146 4.146 5 C -0.187 4.187 6 H 0.122 0.878 7 C 0.542 3.458 8 O -0.543 6.543 9 N -0.602 5.602 10 C 0.112 3.888 11 C -0.108 4.108 12 C -0.072 4.072 13 C -0.136 4.136 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.226 4.226 17 H 0.076 0.924 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.145 3.855 25 C -0.115 4.115 26 C 0.107 3.893 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.039 0.961 43 H 0.251 0.749 44 H 0.016 0.984 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.081 0.919 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 17.700 -12.563 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.097 4.097 3 C -0.173 4.173 4 C -0.184 4.184 5 C -0.208 4.208 6 H 0.140 0.860 7 C 0.331 3.669 8 O -0.421 6.421 9 N -0.335 5.335 10 C -0.009 4.009 11 C -0.146 4.146 12 C -0.074 4.074 13 C -0.174 4.174 14 C 0.055 3.945 15 N -0.330 5.330 16 C -0.355 4.355 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.019 3.981 25 C -0.153 4.153 26 C -0.016 4.016 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.056 0.944 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.225 17.525 -12.440 21.527 hybrid contribution 0.134 -0.574 1.076 1.226 sum 1.359 16.952 -11.364 20.454 Atomic orbital electron populations 1.21341 0.90684 1.01268 1.02585 1.21599 0.96005 0.90482 1.01628 1.21390 0.99887 0.93862 1.02145 1.23203 1.02738 1.01509 0.90917 1.22390 1.01907 1.00783 0.95735 0.86038 1.19629 0.87894 0.81153 0.78255 1.90673 1.14558 1.74952 1.61913 1.48102 1.07275 1.26639 1.51463 1.21732 0.95533 0.87086 0.96585 1.21607 0.95788 0.96241 1.00964 1.21040 0.94564 0.94892 0.96864 1.22861 0.99680 0.95017 0.99831 1.21136 1.00401 0.90425 0.82568 1.44497 1.83311 1.01004 1.04176 1.19037 1.40912 0.92525 0.82978 0.90611 1.24782 1.02208 0.95809 0.97665 1.69971 1.55897 1.00289 1.30806 0.86152 0.77957 0.77551 0.84308 1.21642 1.21740 1.20765 1.21554 0.96691 0.89100 0.90722 1.21741 1.00177 0.93605 0.99803 1.21844 0.79668 0.98115 1.01940 0.91408 0.93484 0.91704 0.92337 0.91715 0.92023 0.87974 0.88340 0.89430 0.90942 0.92559 0.89520 0.92371 0.92563 0.93752 0.94240 0.93838 0.96689 0.94405 0.90710 0.91885 0.90067 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 8.09 37.16 0.30 -0.82 16 2 C -0.10 -0.93 2.70 -154.47 -0.42 -1.34 16 3 C -0.12 -0.84 9.85 37.16 0.37 -0.47 16 4 C -0.15 -1.31 9.53 -26.69 -0.25 -1.57 16 5 C -0.19 -1.94 4.68 -91.77 -0.43 -2.37 16 6 H 0.12 1.05 6.80 -51.93 -0.35 0.70 16 7 C 0.54 7.49 7.46 -10.99 -0.08 7.41 16 8 O -0.54 -9.03 12.51 5.55 0.07 -8.96 16 9 N -0.60 -8.19 2.96 -172.54 -0.51 -8.70 16 10 C 0.11 1.73 6.12 -3.63 -0.02 1.71 16 11 C -0.11 -1.77 4.83 -27.01 -0.13 -1.90 16 12 C -0.07 -1.19 0.54 -154.10 -0.08 -1.27 16 13 C -0.14 -2.46 5.89 -25.25 -0.15 -2.61 16 14 C 0.18 4.28 5.01 -2.96 -0.01 4.27 16 15 N -0.60 -15.02 3.39 -170.30 -0.58 -15.60 16 16 C -0.23 -6.24 10.28 -15.06 -0.15 -6.39 16 17 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -27.03 10.31 55.49 0.57 -26.46 16 20 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.15 2.86 5.22 -2.86 -0.01 2.85 16 25 C -0.11 -1.46 4.84 -26.98 -0.13 -1.59 16 26 C 0.11 1.23 6.04 -3.60 -0.02 1.21 16 27 H 0.07 0.86 7.26 -51.93 -0.38 0.49 16 28 H 0.05 0.43 7.92 -51.93 -0.41 0.02 16 29 H 0.06 0.81 7.02 -51.93 -0.36 0.45 16 30 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 31 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.70 8.05 -51.93 -0.42 0.29 16 34 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 35 H 0.09 1.41 6.99 -51.93 -0.36 1.05 16 36 H 0.07 1.17 6.57 -51.93 -0.34 0.83 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.66 7.84 -51.93 -0.41 1.26 16 39 H 0.06 0.98 8.01 -51.93 -0.42 0.57 16 40 H 0.06 0.96 8.00 -51.93 -0.42 0.54 16 41 H 0.04 1.18 7.38 -51.93 -0.38 0.80 16 42 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.02 0.30 7.97 -51.93 -0.41 -0.11 16 45 H 0.04 0.74 6.19 -51.93 -0.32 0.42 16 46 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 0.73 5.65 -51.93 -0.29 0.44 16 49 H 0.07 0.83 7.64 -51.93 -0.40 0.43 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -31.06 365.93 -9.83 -40.88 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.54 Total: -0.58 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.33 Total: -3.22 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.52 Total: -50.76 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.07 Total: -8.96 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.06 -9.83 -40.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035176708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.449 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds