Wall clock time and date at job start Fri Apr 10 2020 21:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 115.55744 * 2 1 4 4 C 1.53075 * 117.51541 * 214.29369 * 2 1 3 5 5 C 1.52999 * 59.98420 * 252.52477 * 4 2 1 6 6 H 1.09000 * 117.49612 * 252.49938 * 5 4 2 7 7 C 1.50698 * 117.49805 * 107.50629 * 5 4 2 8 8 O 1.21284 * 119.99666 * 291.24673 * 7 5 4 9 9 N 1.34775 * 120.00504 * 111.24952 * 7 5 4 10 10 C 1.46937 * 120.55451 * 179.97438 * 9 7 5 11 11 C 1.53342 * 108.68429 * 125.67365 * 10 9 7 12 12 C 1.52112 * 109.44151 * 53.30280 * 11 10 9 13 13 C 1.54370 * 110.55219 * 177.18780 * 12 11 10 14 14 C 1.54458 * 102.87254 * 276.69663 * 13 12 11 15 15 N 1.47080 * 107.30033 * 338.49509 * 14 13 12 16 16 C 1.36938 * 125.62732 * 179.04106 * 15 14 13 17 17 H 1.08003 * 120.00172 * 179.97438 * 16 15 14 18 18 C 1.38814 * 120.00264 * 359.96048 * 16 15 14 19 19 N 1.31621 * 119.99727 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00147 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47230 * 89.99929 * 20 18 16 22 22 H 1.48500 * 109.46866 * 210.00141 * 20 18 16 23 23 H 1.48502 * 109.46963 * 329.99849 * 20 18 16 24 24 C 1.47562 * 108.74397 * 359.00852 * 15 14 13 25 25 C 1.52108 * 111.60105 * 300.69168 * 12 11 10 26 26 C 1.46933 * 120.54799 * 0.02562 * 9 7 5 27 27 H 1.09000 * 109.47111 * 274.30967 * 1 2 3 28 28 H 1.08999 * 109.47352 * 34.31339 * 1 2 3 29 29 H 1.09004 * 109.46602 * 154.31009 * 1 2 3 30 30 H 1.08998 * 109.46625 * 205.68445 * 3 2 1 31 31 H 1.08994 * 109.47159 * 325.68565 * 3 2 1 32 32 H 1.09000 * 109.47091 * 85.69007 * 3 2 1 33 33 H 1.08997 * 117.48950 * 145.03038 * 4 2 1 34 34 H 1.09004 * 117.53136 * 359.97438 * 4 2 1 35 35 H 1.08992 * 109.59782 * 5.91357 * 10 9 7 36 36 H 1.09000 * 109.59990 * 245.43290 * 10 9 7 37 37 H 1.09000 * 109.47371 * 293.31887 * 11 10 9 38 38 H 1.08995 * 109.47855 * 173.29332 * 11 10 9 39 39 H 1.09001 * 110.73143 * 35.04622 * 13 12 11 40 40 H 1.09000 * 110.72852 * 158.35247 * 13 12 11 41 41 H 1.09004 * 109.87614 * 97.92524 * 14 13 12 42 42 H 1.09004 * 109.87753 * 218.91800 * 14 13 12 43 43 H 0.97002 * 119.99665 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.37804 * 264.49970 * 24 15 14 45 45 H 1.09000 * 110.38119 * 142.14175 * 24 15 14 46 46 H 1.09005 * 109.47537 * 179.29603 * 25 12 11 47 47 H 1.08999 * 109.47384 * 299.31186 * 25 12 11 48 48 H 1.09000 * 109.60188 * 354.08281 * 26 9 7 49 49 H 1.09000 * 109.59788 * 114.40116 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2372 -1.1216 -0.7649 5 6 2.2365 -1.1210 0.7651 6 1 3.1714 -0.8750 1.2687 7 6 1.3721 -2.1406 1.4609 8 8 0.1639 -2.0524 1.4026 9 7 1.9416 -3.1506 2.1480 10 6 1.1104 -4.1511 2.8314 11 6 1.5292 -5.5468 2.3536 12 6 3.0300 -5.7150 2.5356 13 6 3.4692 -7.1376 2.1277 14 6 3.1781 -7.9653 3.3989 15 7 3.1333 -7.0273 4.5309 16 6 2.8816 -7.3620 5.8346 17 1 2.8709 -6.5964 6.5963 18 6 2.6399 -8.6853 6.1774 19 7 2.6522 -9.6182 5.2490 20 14 2.2958 -9.1417 7.9558 21 1 0.8350 -9.0681 8.2120 22 1 2.7747 -10.5235 8.2137 23 1 3.0044 -8.1962 8.8554 24 6 3.4052 -5.6662 4.0299 25 6 3.8096 -4.6698 1.7524 26 6 3.4040 -3.2687 2.2270 27 1 -0.3633 0.0772 1.0248 28 1 -0.3634 0.8488 -0.5793 29 1 -0.3633 -0.9261 -0.4455 30 1 3.1823 1.3085 -0.4454 31 1 1.5812 2.0742 -0.5793 32 1 2.2772 1.7414 1.0248 33 1 3.1724 -0.8756 -1.2679 34 1 1.6128 -1.8599 -1.2679 35 1 0.0612 -3.9814 2.5898 36 1 1.2571 -4.0741 3.9087 37 1 1.2758 -5.6612 1.2997 38 1 1.0053 -6.3033 2.9378 39 1 2.8758 -7.4987 1.2877 40 1 4.5323 -7.1593 1.8882 41 1 2.2183 -8.4722 3.2993 42 1 3.9699 -8.6984 3.5532 43 1 2.4836 -10.5430 5.4886 44 1 4.4608 -5.4220 4.1483 45 1 2.7852 -4.9382 4.5532 46 1 4.8775 -4.8142 1.9169 47 1 3.5885 -4.7721 0.6900 48 1 3.8667 -2.5175 1.5870 49 1 3.7276 -3.1208 3.2573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035176708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:49:35 Heat of formation + Delta-G solvation = -6.581175 kcal Electronic energy + Delta-G solvation = -26621.265706 eV Core-core repulsion = 23162.693929 eV Total energy + Delta-G solvation = -3458.571777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73784 -40.39914 -38.23967 -37.02513 -34.82666 -32.51396 -32.29836 -30.76511 -30.12270 -28.29810 -27.76078 -26.57285 -25.41179 -23.98856 -23.44931 -21.87097 -21.02548 -19.81030 -18.93214 -18.83137 -18.13004 -16.81210 -16.72653 -16.40138 -16.12785 -15.70086 -15.56095 -15.14133 -14.73476 -14.55976 -14.51145 -14.21728 -14.04544 -13.88335 -13.83664 -13.49620 -13.34521 -13.04862 -12.96244 -12.81257 -12.77492 -12.64626 -12.41118 -12.19039 -12.11736 -12.07191 -12.01317 -11.73219 -11.45682 -11.23314 -11.11724 -11.08077 -10.69006 -10.66936 -10.38594 -9.56660 -8.85265 -7.83744 -5.17811 1.44180 1.45824 1.53377 1.54210 1.99609 2.49632 2.83191 3.34357 3.48440 3.60707 3.69796 3.75961 3.87303 3.89496 3.95646 4.12388 4.14163 4.23875 4.30651 4.32139 4.48084 4.61626 4.67209 4.70778 4.75325 4.75861 4.81999 4.85832 4.89420 4.93496 5.02221 5.05359 5.07544 5.11092 5.11863 5.13785 5.15990 5.24355 5.35199 5.37711 5.45063 5.48348 5.56359 5.65234 5.71560 5.80946 6.21931 6.49457 7.12518 7.22753 7.81197 8.45837 9.26549 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.029056 B = 0.003190 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.431320 B = 8774.689637 C = 9098.972420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.103 4.103 3 C -0.111 4.111 4 C -0.131 4.131 5 C -0.193 4.193 6 H 0.149 0.851 7 C 0.535 3.465 8 O -0.580 6.580 9 N -0.602 5.602 10 C 0.121 3.879 11 C -0.100 4.100 12 C -0.060 4.060 13 C -0.122 4.122 14 C 0.188 3.812 15 N -0.624 5.624 16 C -0.236 4.236 17 H 0.080 0.920 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.974 3.026 21 H -0.289 1.289 22 H -0.295 1.295 23 H -0.268 1.268 24 C 0.144 3.856 25 C -0.107 4.107 26 C 0.106 3.894 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.134 0.866 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.004 0.996 42 H 0.001 0.999 43 H 0.245 0.755 44 H 0.027 0.973 45 H 0.037 0.963 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.119 0.881 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 20.518 -13.957 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C -0.168 4.168 4 C -0.168 4.168 5 C -0.213 4.213 6 H 0.166 0.834 7 C 0.325 3.675 8 O -0.461 6.461 9 N -0.334 5.334 10 C -0.002 4.002 11 C -0.138 4.138 12 C -0.061 4.061 13 C -0.160 4.160 14 C 0.063 3.937 15 N -0.350 5.350 16 C -0.366 4.366 17 H 0.098 0.902 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.803 3.197 21 H -0.216 1.216 22 H -0.222 1.222 23 H -0.193 1.193 24 C 0.019 3.981 25 C -0.145 4.145 26 C -0.015 4.015 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.022 0.978 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.055 0.945 46 H 0.112 0.888 47 H 0.097 0.903 48 H 0.137 0.863 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.413 20.388 -13.841 24.877 hybrid contribution -0.609 -1.432 1.513 2.170 sum 2.804 18.955 -12.329 22.785 Atomic orbital electron populations 1.21253 0.92501 1.00797 1.01060 1.21716 0.94888 0.91985 1.01815 1.21392 1.00745 0.92175 1.02501 1.23298 1.03566 1.00277 0.89673 1.22434 1.02263 1.00052 0.96567 0.83383 1.20351 0.87916 0.81438 0.77792 1.90668 1.16508 1.75809 1.63115 1.48164 1.08132 1.26056 1.51084 1.21419 0.95412 0.87274 0.96064 1.21471 0.95784 0.95754 1.00776 1.20982 0.94779 0.95272 0.95064 1.22738 1.01263 0.94964 0.97059 1.20869 0.96912 0.90661 0.85277 1.44792 1.83092 1.03437 1.03722 1.19429 1.39839 0.92743 0.84553 0.90216 1.25603 1.02933 0.95963 1.01561 1.70201 1.57290 1.00110 1.32539 0.85140 0.77605 0.77003 0.79991 1.21584 1.22172 1.19295 1.21748 0.97121 0.86421 0.92821 1.21711 1.00458 0.92557 0.99820 1.22045 0.78125 0.98409 1.02960 0.93832 0.91784 0.93945 0.90369 0.91127 0.92063 0.84789 0.89748 0.90802 0.92142 0.91588 0.93313 0.90986 0.90492 0.97806 0.98060 0.94613 0.95480 0.94462 0.88794 0.90334 0.86292 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 8.09 71.98 0.58 -1.54 16 2 C -0.10 -1.70 2.70 -52.15 -0.14 -1.84 16 3 C -0.11 -1.19 9.85 71.98 0.71 -0.48 16 4 C -0.13 -1.84 9.53 30.62 0.29 -1.55 16 5 C -0.19 -3.32 4.68 -11.54 -0.05 -3.37 16 6 H 0.15 1.76 6.80 -2.39 -0.02 1.75 16 7 C 0.53 13.93 7.46 87.66 0.65 14.59 16 8 O -0.58 -19.48 12.51 -3.04 -0.04 -19.52 16 9 N -0.60 -15.22 2.96 -818.20 -2.42 -17.64 16 10 C 0.12 3.75 6.12 86.41 0.53 4.28 16 11 C -0.10 -3.27 4.83 30.42 0.15 -3.12 16 12 C -0.06 -1.87 0.54 -51.92 -0.03 -1.90 16 13 C -0.12 -4.31 5.89 31.55 0.19 -4.12 16 14 C 0.19 9.32 5.01 86.76 0.43 9.75 16 15 N -0.62 -31.79 3.39 -692.72 -2.35 -34.14 16 16 C -0.24 -13.34 10.28 84.03 0.86 -12.47 16 17 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 18 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 19 N -0.95 -58.33 10.31 21.65 0.22 -58.11 16 20 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 C 0.14 5.54 5.22 86.56 0.45 5.99 16 25 C -0.11 -2.28 4.84 30.43 0.15 -2.13 16 26 C 0.11 2.01 6.04 86.43 0.52 2.54 16 27 H 0.04 1.12 7.26 -2.39 -0.02 1.11 16 28 H 0.06 1.09 7.92 -2.39 -0.02 1.08 16 29 H 0.04 1.07 7.02 -2.38 -0.02 1.06 16 30 H 0.08 0.55 7.90 -2.39 -0.02 0.53 16 31 H 0.07 0.68 7.92 -2.39 -0.02 0.66 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.13 1.08 8.05 -2.39 -0.02 1.06 16 34 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 35 H 0.07 2.48 6.99 -2.39 -0.02 2.46 16 36 H 0.06 2.00 6.57 -2.39 -0.02 1.98 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.05 1.96 7.84 -2.39 -0.02 1.94 16 39 H 0.07 2.35 8.01 -2.39 -0.02 2.33 16 40 H 0.08 2.43 8.00 -2.39 -0.02 2.41 16 41 H 0.00 0.21 7.38 -2.38 -0.02 0.19 16 42 H 0.00 0.07 7.50 -2.39 -0.02 0.05 16 43 H 0.24 14.64 8.31 -92.71 -0.77 13.86 16 44 H 0.03 1.01 7.97 -2.39 -0.02 0.99 16 45 H 0.04 1.44 6.19 -2.39 -0.01 1.43 16 46 H 0.09 1.75 8.09 -2.38 -0.02 1.73 16 47 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.12 1.43 5.65 -2.39 -0.01 1.42 16 49 H 0.07 1.40 7.64 -2.39 -0.02 1.38 16 Total: -1.00 -72.26 365.93 4.12 -68.14 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.91 Total: 11.47 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 5.76 Total: 1.16 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -4.54 Total: -109.88 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.04 Total: -19.52 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -72.26 4.12 -68.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035176708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.563 kcal (2) G-P(sol) polarization free energy of solvation -72.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds