Wall clock time and date at job start Fri Apr 10 2020 21:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 112.85230 * 2 1 4 4 O 1.21275 * 120.00059 * 129.66804 * 3 2 1 5 5 N 1.34775 * 119.99625 * 309.66700 * 3 2 1 6 6 C 1.46501 * 119.99449 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.46727 * 180.02562 * 6 5 3 8 8 C 1.53354 * 111.22722 * 297.62615 * 7 6 5 9 9 C 1.55540 * 105.83631 * 241.96997 * 8 7 6 10 10 C 1.54676 * 104.35289 * 334.36349 * 9 8 7 11 11 C 1.54576 * 111.31484 * 177.44990 * 7 6 5 12 12 H 1.09000 * 111.92674 * 18.71556 * 11 7 6 13 13 N 1.46891 * 107.36667 * 255.61651 * 11 7 6 14 14 C 1.36940 * 125.24756 * 181.65746 * 13 11 7 15 15 H 1.08000 * 120.00334 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00074 * 179.97438 * 14 13 11 17 17 N 1.31631 * 119.99875 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00416 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47066 * 59.99655 * 18 16 14 20 20 H 1.48497 * 109.47619 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47025 * 300.00307 * 18 16 14 22 22 C 1.46736 * 109.50247 * 1.66330 * 13 11 7 23 23 C 1.53870 * 111.25725 * 61.01469 * 7 6 5 24 24 C 1.53781 * 113.61512 * 228.80063 * 2 1 3 25 25 C 1.53947 * 87.02521 * 220.05037 * 24 2 1 26 26 C 1.53783 * 87.11056 * 25.36395 * 25 24 2 27 27 H 1.09002 * 109.47153 * 50.33193 * 1 2 3 28 28 H 1.09001 * 109.46832 * 290.33384 * 1 2 3 29 29 H 1.09004 * 109.47261 * 170.33365 * 1 2 3 30 30 H 0.96997 * 120.00117 * 0.02562 * 5 3 2 31 31 H 1.08998 * 109.46843 * 299.99523 * 6 5 3 32 32 H 1.08997 * 109.47329 * 60.00147 * 6 5 3 33 33 H 1.08993 * 110.05880 * 1.98052 * 8 7 6 34 34 H 1.09006 * 110.05640 * 123.47740 * 8 7 6 35 35 H 1.08996 * 110.54207 * 215.54584 * 9 8 7 36 36 H 1.09000 * 110.34456 * 93.07779 * 9 8 7 37 37 H 1.09009 * 110.61061 * 278.64586 * 10 9 8 38 38 H 1.08995 * 110.61801 * 155.66338 * 10 9 8 39 39 H 0.96997 * 119.99576 * 180.02562 * 17 16 14 40 40 H 1.08997 * 110.04120 * 221.96485 * 22 13 11 41 41 H 1.08996 * 110.08929 * 100.52818 * 22 13 11 42 42 H 1.09002 * 110.56921 * 212.51120 * 23 7 6 43 43 H 1.08997 * 110.57168 * 335.23773 * 23 7 6 44 44 H 1.09000 * 113.61782 * 334.57090 * 24 2 1 45 45 H 1.09006 * 113.61394 * 105.46714 * 24 2 1 46 46 H 1.09000 * 113.53652 * 270.81286 * 25 24 2 47 47 H 1.08995 * 113.74682 * 139.94419 * 25 24 2 48 48 H 1.09003 * 113.61211 * 220.09285 * 26 25 24 49 49 H 1.08992 * 113.69196 * 89.19759 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9685 1.6872 0.8084 5 7 1.6903 2.2990 -0.8985 6 6 2.2597 3.6488 -0.8988 7 6 1.6087 4.4766 -2.0088 8 6 1.8972 3.8771 -3.3905 9 6 2.6972 4.9627 -4.1655 10 6 2.2722 6.2959 -3.5063 11 6 2.1335 5.9305 -2.0069 12 1 3.0739 6.0231 -1.4636 13 7 1.0816 6.7757 -1.4265 14 6 1.1512 8.1355 -1.2804 15 1 2.0325 8.6691 -1.6044 16 6 0.0889 8.8282 -0.7159 17 7 -0.9850 8.1778 -0.3205 18 14 0.1834 10.6831 -0.5172 19 1 0.3564 11.3155 -1.8496 20 1 -1.0693 11.1786 0.1075 21 1 1.3388 11.0299 0.3490 22 6 -0.0551 5.9381 -1.0273 23 6 0.0912 4.6075 -1.7901 24 6 2.1460 -0.9281 -1.0602 25 6 3.1923 -1.3137 0.0012 26 6 2.1460 -0.9281 1.0602 27 1 -0.3633 0.6560 -0.7911 28 1 -0.3633 0.3571 0.9636 29 1 -0.3634 -1.0131 -0.1726 30 1 1.0076 2.0604 -1.5449 31 1 2.0721 4.1225 0.0648 32 1 3.3343 3.5899 -1.0717 33 1 2.4801 2.9620 -3.2866 34 1 0.9619 3.6683 -3.9100 35 1 2.4271 4.9558 -5.2215 36 1 3.7685 4.8019 -4.0454 37 1 1.3177 6.6357 -3.9084 38 1 3.0411 7.0556 -3.6466 39 1 -1.7274 8.6619 0.0736 40 1 -0.9916 6.4244 -1.3006 41 1 -0.0280 5.7576 0.0473 42 1 -0.4308 4.6545 -2.7459 43 1 -0.2825 3.7769 -1.1913 44 1 1.4945 -1.7523 -1.3506 45 1 2.5650 -0.3971 -1.9150 46 1 4.0711 -0.6688 0.0006 47 1 3.4454 -2.3739 0.0032 48 1 2.5651 -0.3971 1.9149 49 1 1.4939 -1.7514 1.3517 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107502459.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:48:52 Heat of formation + Delta-G solvation = -4.987495 kcal Electronic energy + Delta-G solvation = -26805.109976 eV Core-core repulsion = 23346.607306 eV Total energy + Delta-G solvation = -3458.502670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76168 -39.46357 -37.35529 -34.73863 -33.95227 -31.75153 -30.66547 -29.91419 -27.78010 -26.68702 -25.84141 -24.88022 -23.84496 -23.47515 -21.51842 -20.08091 -19.96763 -19.30684 -18.01973 -16.97254 -16.54156 -15.78660 -15.53675 -15.09531 -14.90450 -14.53675 -14.38219 -13.96553 -13.67538 -13.51189 -13.19952 -13.08855 -12.82324 -12.72323 -12.53674 -12.29766 -11.83558 -11.55920 -11.43364 -11.26903 -11.12625 -11.07320 -10.79652 -10.72299 -10.65689 -10.48065 -10.40392 -10.25231 -10.12803 -10.05005 -9.83816 -9.58338 -9.57189 -9.42778 -8.82895 -8.57784 -6.80108 -5.64202 -3.03078 2.71286 3.26400 3.41938 3.46572 3.47410 4.27532 4.39991 4.50826 4.57854 4.65776 4.86686 4.97695 5.00118 5.04155 5.26262 5.42754 5.47763 5.49452 5.52291 5.56276 5.57518 5.61063 5.72065 5.76938 5.84113 5.86671 5.89077 5.95594 6.03680 6.06784 6.09192 6.10501 6.18957 6.25346 6.31289 6.40473 6.44910 6.49070 6.65542 6.70572 6.78053 6.87265 7.13042 7.56889 7.65033 7.69364 7.88299 8.35391 8.37231 9.26327 9.87413 10.50844 11.41342 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.003672 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.886817 B = 7623.100518 C = 8229.472347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C 0.534 3.466 4 O -0.540 6.540 5 N -0.719 5.719 6 C 0.141 3.859 7 C -0.081 4.081 8 C -0.110 4.110 9 C -0.122 4.122 10 C -0.130 4.130 11 C 0.173 3.827 12 H 0.047 0.953 13 N -0.596 5.596 14 C -0.221 4.221 15 H 0.076 0.924 16 C -0.010 4.010 17 N -0.923 5.923 18 Si 0.912 3.088 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.163 3.837 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.141 4.141 26 C -0.118 4.118 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.399 0.601 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.251 0.749 40 H 0.093 0.907 41 H 0.012 0.988 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.361 -18.715 -4.824 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 C 0.320 3.680 4 O -0.417 6.417 5 N -0.370 5.370 6 C 0.017 3.983 7 C -0.082 4.082 8 C -0.148 4.148 9 C -0.160 4.160 10 C -0.170 4.170 11 C 0.065 3.935 12 H 0.064 0.936 13 N -0.319 5.319 14 C -0.349 4.349 15 H 0.094 0.906 16 C -0.206 4.206 17 N -0.571 5.571 18 Si 0.742 3.258 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.213 1.213 22 C 0.038 3.962 23 C -0.172 4.172 24 C -0.160 4.160 25 C -0.178 4.178 26 C -0.156 4.156 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.234 0.766 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.030 0.970 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.823 -18.287 -4.129 19.133 hybrid contribution -0.352 0.954 -0.154 1.028 sum 3.471 -17.333 -4.283 18.189 Atomic orbital electron populations 1.21729 0.92269 1.02483 1.02761 1.21974 0.96626 0.92550 1.00402 1.19882 0.81936 0.85699 0.80530 1.90684 1.32176 1.80136 1.38699 1.46022 1.42854 1.12646 1.35440 1.21347 0.96932 0.80433 0.99547 1.21870 0.97127 0.95765 0.93483 1.22372 1.00016 0.97662 0.94780 1.22520 0.99084 0.95905 0.98531 1.22990 1.01207 0.95259 0.97534 1.21521 0.92430 0.87342 0.92236 0.93583 1.44323 1.13608 1.02593 1.71423 1.18993 1.01044 0.80980 1.33892 0.90602 1.24772 0.96644 0.98049 1.01096 1.69879 1.06578 1.33474 1.47158 0.86197 0.76751 0.85088 0.77726 1.21231 1.21670 1.21265 1.21424 0.93931 0.86210 0.94586 1.22794 0.93043 1.00508 1.00807 1.22988 0.98250 0.98381 0.96370 1.22861 0.97547 1.01334 0.96100 1.22829 0.97570 0.97876 0.97288 0.92086 0.91776 0.91530 0.76609 0.90994 0.91814 0.92281 0.91828 0.92544 0.92433 0.90970 0.92754 0.93814 0.88961 0.97015 0.92125 0.92581 0.89156 0.91197 0.89841 0.91332 0.90047 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.09 37.16 0.34 -0.85 16 2 C -0.11 -1.17 1.25 -154.84 -0.19 -1.37 16 3 C 0.53 7.60 6.64 -10.98 -0.07 7.53 16 4 O -0.54 -9.85 15.83 5.56 0.09 -9.76 16 5 N -0.72 -9.61 4.54 -60.29 -0.27 -9.89 16 6 C 0.14 2.26 4.43 -4.04 -0.02 2.25 16 7 C -0.08 -1.33 0.53 -153.04 -0.08 -1.41 16 8 C -0.11 -1.49 5.75 -25.20 -0.14 -1.63 16 9 C -0.12 -1.72 6.88 -24.50 -0.17 -1.89 16 10 C -0.13 -2.33 6.23 -24.82 -0.15 -2.49 16 11 C 0.17 3.45 3.60 -65.86 -0.24 3.22 16 12 H 0.05 0.96 7.93 -51.93 -0.41 0.55 16 13 N -0.60 -14.70 2.99 -162.43 -0.49 -15.19 16 14 C -0.22 -6.03 9.96 -15.06 -0.15 -6.18 16 15 H 0.08 2.02 7.83 -52.49 -0.41 1.60 16 16 C -0.01 -0.28 5.48 -17.42 -0.10 -0.38 16 17 N -0.92 -26.77 10.14 55.49 0.56 -26.20 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.16 3.88 5.65 -3.35 -0.02 3.86 16 23 C -0.13 -2.37 5.77 -25.72 -0.15 -2.51 16 24 C -0.12 -1.04 7.23 -25.83 -0.19 -1.23 16 25 C -0.14 -1.33 7.76 -25.83 -0.20 -1.53 16 26 C -0.12 -1.19 7.02 -25.91 -0.18 -1.37 16 27 H 0.06 0.51 7.11 -51.93 -0.37 0.14 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.46 7.98 -51.93 -0.41 0.04 16 30 H 0.40 4.48 6.54 -40.82 -0.27 4.21 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.71 7.51 -51.93 -0.39 0.32 16 34 H 0.06 0.81 7.28 -51.93 -0.38 0.43 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.44 8.06 -51.92 -0.42 1.02 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.09 2.48 6.16 -51.93 -0.32 2.16 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 1.04 7.42 -51.93 -0.39 0.66 16 43 H 0.06 0.90 7.02 -51.93 -0.36 0.53 16 44 H 0.09 0.60 7.99 -51.93 -0.41 0.19 16 45 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.08 1.00 7.41 -51.93 -0.38 0.61 16 49 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -30.83 371.64 -9.95 -40.78 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.71 Total: 3.55 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.71 Total: -5.98 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.20 Total: -51.28 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.83 -9.95 -40.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107502459.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.793 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds