Wall clock time and date at job start Fri Apr 10 2020 21:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 112.85230 * 2 1 4 4 O 1.21275 * 120.00059 * 129.66804 * 3 2 1 5 5 N 1.34775 * 119.99625 * 309.66700 * 3 2 1 6 6 C 1.46501 * 119.99449 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.46727 * 180.02562 * 6 5 3 8 8 C 1.53354 * 111.22722 * 297.62615 * 7 6 5 9 9 C 1.55540 * 105.83631 * 241.96997 * 8 7 6 10 10 C 1.54676 * 104.35289 * 334.36349 * 9 8 7 11 11 C 1.54576 * 111.31484 * 177.44990 * 7 6 5 12 12 H 1.09000 * 111.92674 * 18.71556 * 11 7 6 13 13 N 1.46891 * 107.36667 * 255.61651 * 11 7 6 14 14 C 1.36940 * 125.24756 * 181.65746 * 13 11 7 15 15 H 1.08000 * 120.00334 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00074 * 179.97438 * 14 13 11 17 17 N 1.31631 * 119.99875 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00416 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47066 * 59.99655 * 18 16 14 20 20 H 1.48497 * 109.47619 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47025 * 300.00307 * 18 16 14 22 22 C 1.46736 * 109.50247 * 1.66330 * 13 11 7 23 23 C 1.53870 * 111.25725 * 61.01469 * 7 6 5 24 24 C 1.53781 * 113.61512 * 228.80063 * 2 1 3 25 25 C 1.53947 * 87.02521 * 220.05037 * 24 2 1 26 26 C 1.53783 * 87.11056 * 25.36395 * 25 24 2 27 27 H 1.09002 * 109.47153 * 50.33193 * 1 2 3 28 28 H 1.09001 * 109.46832 * 290.33384 * 1 2 3 29 29 H 1.09004 * 109.47261 * 170.33365 * 1 2 3 30 30 H 0.96997 * 120.00117 * 0.02562 * 5 3 2 31 31 H 1.08998 * 109.46843 * 299.99523 * 6 5 3 32 32 H 1.08997 * 109.47329 * 60.00147 * 6 5 3 33 33 H 1.08993 * 110.05880 * 1.98052 * 8 7 6 34 34 H 1.09006 * 110.05640 * 123.47740 * 8 7 6 35 35 H 1.08996 * 110.54207 * 215.54584 * 9 8 7 36 36 H 1.09000 * 110.34456 * 93.07779 * 9 8 7 37 37 H 1.09009 * 110.61061 * 278.64586 * 10 9 8 38 38 H 1.08995 * 110.61801 * 155.66338 * 10 9 8 39 39 H 0.96997 * 119.99576 * 180.02562 * 17 16 14 40 40 H 1.08997 * 110.04120 * 221.96485 * 22 13 11 41 41 H 1.08996 * 110.08929 * 100.52818 * 22 13 11 42 42 H 1.09002 * 110.56921 * 212.51120 * 23 7 6 43 43 H 1.08997 * 110.57168 * 335.23773 * 23 7 6 44 44 H 1.09000 * 113.61782 * 334.57090 * 24 2 1 45 45 H 1.09006 * 113.61394 * 105.46714 * 24 2 1 46 46 H 1.09000 * 113.53652 * 270.81286 * 25 24 2 47 47 H 1.08995 * 113.74682 * 139.94419 * 25 24 2 48 48 H 1.09003 * 113.61211 * 220.09285 * 26 25 24 49 49 H 1.08992 * 113.69196 * 89.19759 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9685 1.6872 0.8084 5 7 1.6903 2.2990 -0.8985 6 6 2.2597 3.6488 -0.8988 7 6 1.6087 4.4766 -2.0088 8 6 1.8972 3.8771 -3.3905 9 6 2.6972 4.9627 -4.1655 10 6 2.2722 6.2959 -3.5063 11 6 2.1335 5.9305 -2.0069 12 1 3.0739 6.0231 -1.4636 13 7 1.0816 6.7757 -1.4265 14 6 1.1512 8.1355 -1.2804 15 1 2.0325 8.6691 -1.6044 16 6 0.0889 8.8282 -0.7159 17 7 -0.9850 8.1778 -0.3205 18 14 0.1834 10.6831 -0.5172 19 1 0.3564 11.3155 -1.8496 20 1 -1.0693 11.1786 0.1075 21 1 1.3388 11.0299 0.3490 22 6 -0.0551 5.9381 -1.0273 23 6 0.0912 4.6075 -1.7901 24 6 2.1460 -0.9281 -1.0602 25 6 3.1923 -1.3137 0.0012 26 6 2.1460 -0.9281 1.0602 27 1 -0.3633 0.6560 -0.7911 28 1 -0.3633 0.3571 0.9636 29 1 -0.3634 -1.0131 -0.1726 30 1 1.0076 2.0604 -1.5449 31 1 2.0721 4.1225 0.0648 32 1 3.3343 3.5899 -1.0717 33 1 2.4801 2.9620 -3.2866 34 1 0.9619 3.6683 -3.9100 35 1 2.4271 4.9558 -5.2215 36 1 3.7685 4.8019 -4.0454 37 1 1.3177 6.6357 -3.9084 38 1 3.0411 7.0556 -3.6466 39 1 -1.7274 8.6619 0.0736 40 1 -0.9916 6.4244 -1.3006 41 1 -0.0280 5.7576 0.0473 42 1 -0.4308 4.6545 -2.7459 43 1 -0.2825 3.7769 -1.1913 44 1 1.4945 -1.7523 -1.3506 45 1 2.5650 -0.3971 -1.9150 46 1 4.0711 -0.6688 0.0006 47 1 3.4454 -2.3739 0.0032 48 1 2.5651 -0.3971 1.9149 49 1 1.4939 -1.7514 1.3517 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107502459.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:48:52 Heat of formation + Delta-G solvation = -22.883949 kcal Electronic energy + Delta-G solvation = -26805.886024 eV Core-core repulsion = 23346.607306 eV Total energy + Delta-G solvation = -3459.278719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.82795 -40.84103 -38.40289 -36.32931 -35.42172 -33.47179 -32.17394 -30.95074 -29.18424 -28.34654 -26.58440 -26.10423 -25.69886 -24.47748 -22.58182 -21.76651 -21.31153 -20.43810 -19.44235 -18.79152 -17.57084 -16.95648 -16.86845 -16.58868 -16.35034 -15.88239 -15.58822 -15.32019 -14.95640 -14.59042 -14.49407 -14.32797 -14.16266 -14.02008 -13.46815 -13.42907 -13.23511 -13.05918 -12.90773 -12.84513 -12.61199 -12.44067 -12.23027 -12.06099 -11.89060 -11.83561 -11.62301 -11.54398 -11.43121 -11.34454 -11.20951 -11.15858 -11.05146 -10.69333 -10.66649 -10.09065 -8.83865 -7.77498 -5.17956 1.44249 1.47178 1.53266 1.60429 2.14753 2.49959 3.32909 3.47242 3.50290 3.62980 3.66312 3.71064 3.75223 3.94367 3.97195 4.11987 4.27291 4.36275 4.42991 4.52301 4.56279 4.58064 4.64964 4.72091 4.78869 4.82317 4.85341 4.88138 4.90080 4.93278 5.03745 5.06725 5.14956 5.15995 5.17982 5.22058 5.28840 5.34581 5.37809 5.41321 5.46593 5.52546 5.53277 5.60775 5.70615 5.86317 6.30801 6.56648 7.14450 7.25363 7.84312 8.45583 9.26046 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.003672 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.886817 B = 7623.100518 C = 8229.472347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C 0.528 3.472 4 O -0.588 6.588 5 N -0.706 5.706 6 C 0.152 3.848 7 C -0.067 4.067 8 C -0.101 4.101 9 C -0.112 4.112 10 C -0.124 4.124 11 C 0.156 3.844 12 H 0.033 0.967 13 N -0.614 5.614 14 C -0.231 4.231 15 H 0.077 0.923 16 C -0.068 4.068 17 N -0.950 5.950 18 Si 0.975 3.025 19 H -0.275 1.275 20 H -0.295 1.295 21 H -0.283 1.283 22 C 0.169 3.831 23 C -0.116 4.116 24 C -0.106 4.106 25 C -0.144 4.144 26 C -0.121 4.121 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.414 0.586 31 H 0.029 0.971 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.244 0.756 40 H 0.058 0.942 41 H -0.030 1.030 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.123 0.877 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.090 0.910 48 H 0.048 0.952 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.398 -21.475 -7.419 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 C 0.316 3.684 4 O -0.469 6.469 5 N -0.358 5.358 6 C 0.028 3.972 7 C -0.068 4.068 8 C -0.138 4.138 9 C -0.150 4.150 10 C -0.164 4.164 11 C 0.049 3.951 12 H 0.050 0.950 13 N -0.338 5.338 14 C -0.360 4.360 15 H 0.095 0.905 16 C -0.260 4.260 17 N -0.600 5.600 18 Si 0.803 3.197 19 H -0.201 1.201 20 H -0.221 1.221 21 H -0.209 1.209 22 C 0.043 3.957 23 C -0.155 4.155 24 C -0.144 4.144 25 C -0.181 4.181 26 C -0.159 4.159 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.252 0.748 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.076 0.924 41 H -0.012 1.012 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.141 0.859 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.109 0.891 48 H 0.067 0.933 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.870 -21.074 -6.771 22.471 hybrid contribution -0.302 1.844 0.742 2.010 sum 3.568 -19.231 -6.029 20.467 Atomic orbital electron populations 1.21771 0.90573 1.04450 1.02288 1.21995 0.97724 0.90086 1.01952 1.20700 0.81110 0.87187 0.79426 1.90666 1.34452 1.81236 1.40500 1.45850 1.42904 1.11278 1.35736 1.21014 0.97144 0.81689 0.97374 1.21746 0.95500 0.93756 0.95783 1.22356 1.01412 0.98081 0.91987 1.22476 0.99998 0.93008 0.99477 1.22810 1.00069 0.97708 0.95804 1.21816 0.90834 0.89174 0.93228 0.94970 1.44590 1.15214 1.02435 1.71576 1.19340 1.00896 0.82682 1.33107 0.90486 1.25571 0.96597 1.02223 1.01608 1.70133 1.07026 1.34620 1.48188 0.85204 0.76339 0.80237 0.77888 1.20102 1.22081 1.20930 1.21174 0.92471 0.89015 0.93007 1.22636 0.94527 0.97470 1.00832 1.23021 0.97677 0.98347 0.95306 1.22838 0.96752 1.02105 0.96403 1.22920 0.98343 0.98341 0.96276 0.91422 0.93212 0.88609 0.74827 0.95241 0.91775 0.89775 0.89849 0.90152 0.91063 0.93160 0.93227 0.94607 0.92387 1.01217 0.90477 0.90549 0.85929 0.91070 0.92558 0.89133 0.93276 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.09 71.98 0.65 -1.27 16 2 C -0.11 -2.14 1.25 -52.40 -0.07 -2.21 16 3 C 0.53 14.75 6.64 87.66 0.58 15.33 16 4 O -0.59 -22.22 15.83 -3.01 -0.05 -22.27 16 5 N -0.71 -17.88 4.54 -463.06 -2.10 -19.98 16 6 C 0.15 4.90 4.43 86.38 0.38 5.28 16 7 C -0.07 -2.11 0.53 -51.23 -0.03 -2.13 16 8 C -0.10 -2.31 5.75 31.59 0.18 -2.13 16 9 C -0.11 -2.74 6.88 32.04 0.22 -2.52 16 10 C -0.12 -4.34 6.23 31.83 0.20 -4.14 16 11 C 0.16 6.33 3.60 46.12 0.17 6.49 16 12 H 0.03 1.39 7.93 -2.39 -0.02 1.37 16 13 N -0.61 -31.56 2.99 -667.80 -1.99 -33.56 16 14 C -0.23 -13.10 9.96 84.03 0.84 -12.26 16 15 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 16 C -0.07 -3.91 5.48 84.86 0.47 -3.44 16 17 N -0.95 -57.73 10.14 21.65 0.22 -57.51 16 18 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 21 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 22 C 0.17 8.40 5.65 86.70 0.49 8.89 16 23 C -0.12 -4.06 5.77 31.25 0.18 -3.88 16 24 C -0.11 -1.40 7.23 31.18 0.23 -1.18 16 25 C -0.14 -2.40 7.76 31.18 0.24 -2.16 16 26 C -0.12 -2.26 7.02 31.12 0.22 -2.04 16 27 H 0.07 0.89 7.11 -2.39 -0.02 0.87 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.86 7.98 -2.38 -0.02 0.84 16 30 H 0.41 7.98 6.54 -92.71 -0.61 7.37 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 1.59 7.51 -2.39 -0.02 1.58 16 34 H 0.08 1.67 7.28 -2.38 -0.02 1.66 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.05 1.98 8.06 -2.38 -0.02 1.96 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 40 H 0.06 3.29 6.16 -2.39 -0.01 3.27 16 41 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 42 H 0.08 2.48 7.42 -2.39 -0.02 2.46 16 43 H 0.08 2.34 7.02 -2.39 -0.02 2.33 16 44 H 0.12 0.91 7.99 -2.39 -0.02 0.90 16 45 H 0.07 0.96 8.09 -2.38 -0.02 0.94 16 46 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.05 1.24 7.41 -2.39 -0.02 1.22 16 49 H 0.11 1.47 8.10 -2.39 -0.02 1.45 16 Total: -1.00 -73.51 371.64 3.37 -70.14 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.31 Total: 17.76 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 4.95 Total: -3.37 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.88 Total: -111.05 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -73.51 3.37 -70.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107502459.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.259 kcal (2) G-P(sol) polarization free energy of solvation -73.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds