Wall clock time and date at job start Fri Apr 10 2020 21:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.01524 * 2 1 4 4 C 1.50695 * 109.47492 * 59.29737 * 3 2 1 5 5 O 1.21293 * 119.99710 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00551 * 179.97438 * 4 3 2 7 7 C 1.46495 * 120.00251 * 179.97438 * 6 4 3 8 8 H 1.09007 * 110.68464 * 32.01970 * 7 6 4 9 9 C 1.54215 * 110.49692 * 269.09615 * 7 6 4 10 10 C 1.55840 * 103.56537 * 241.50545 * 9 7 6 11 11 H 1.09001 * 116.12898 * 159.06077 * 10 9 7 12 12 C 1.55844 * 105.06739 * 288.08765 * 10 9 7 13 13 C 1.54852 * 103.44236 * 71.82331 * 12 10 9 14 14 C 1.55846 * 110.62609 * 155.00027 * 7 6 4 15 15 H 1.09002 * 116.12557 * 319.33953 * 14 7 6 16 16 N 1.50236 * 101.04805 * 85.55269 * 14 7 6 17 17 C 1.36942 * 130.83896 * 234.00098 * 16 14 7 18 18 H 1.08000 * 119.99598 * 342.41119 * 17 16 14 19 19 C 1.38810 * 119.99704 * 162.40414 * 17 16 14 20 20 N 1.31612 * 120.00431 * 337.82536 * 19 17 16 21 21 Si 1.86803 * 119.99518 * 157.83188 * 19 17 16 22 22 H 1.48499 * 109.46706 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47356 * 59.99650 * 21 19 17 24 24 H 1.48500 * 109.46893 * 299.99450 * 21 19 17 25 25 C 1.54264 * 110.03261 * 121.38665 * 2 1 3 26 26 C 1.54968 * 104.15848 * 95.75619 * 25 2 1 27 27 C 1.54890 * 102.77543 * 37.88852 * 26 25 2 28 28 C 1.53874 * 110.03343 * 238.61182 * 2 1 3 29 29 H 1.09001 * 109.47307 * 60.70072 * 1 2 3 30 30 H 1.08994 * 109.47132 * 180.70163 * 1 2 3 31 31 H 1.09002 * 109.47038 * 300.70376 * 1 2 3 32 32 H 1.08995 * 109.47099 * 299.29736 * 3 2 1 33 33 H 1.09000 * 109.46974 * 179.30048 * 3 2 1 34 34 H 0.96997 * 119.99466 * 0.02562 * 6 4 3 35 35 H 1.09005 * 110.64819 * 122.94389 * 9 7 6 36 36 H 1.09001 * 110.49812 * 0.02562 * 9 7 6 37 37 H 1.08998 * 110.62670 * 190.31052 * 12 10 9 38 38 H 1.08997 * 110.62442 * 313.33677 * 12 10 9 39 39 H 1.09001 * 110.63035 * 118.49139 * 13 12 10 40 40 H 1.09001 * 110.62485 * 241.35410 * 13 12 10 41 41 H 0.97001 * 119.99766 * 353.96625 * 20 19 17 42 42 H 1.09001 * 110.48739 * 214.40146 * 25 2 1 43 43 H 1.08999 * 110.48590 * 337.04973 * 25 2 1 44 44 H 1.09003 * 110.72025 * 279.57364 * 26 25 2 45 45 H 1.08996 * 110.76669 * 156.21882 * 26 25 2 46 46 H 1.09006 * 110.48432 * 203.40694 * 27 26 25 47 47 H 1.08996 * 110.48749 * 80.76291 * 27 26 25 48 48 H 1.08995 * 110.03033 * 359.94131 * 28 2 1 49 49 H 1.08990 * 110.03571 * 121.38268 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 1.5440 2.1580 1.2216 5 8 0.8323 1.5784 2.0145 6 7 1.8798 3.4459 1.4336 7 6 1.3839 4.1463 2.6209 8 1 1.2724 3.4556 3.4569 9 6 0.0459 4.8489 2.3139 10 6 0.3621 6.3565 2.5498 11 1 -0.3069 7.0687 2.0667 12 6 0.4992 6.5047 4.0951 13 6 1.8435 5.8018 4.4063 14 6 2.3345 5.3209 3.0025 15 1 3.4026 5.1207 2.9180 16 7 1.8020 6.4185 2.1257 17 6 2.4337 7.2237 1.2157 18 1 3.5090 7.3217 1.2363 19 6 1.6917 7.9136 0.2668 20 7 0.4878 7.4940 -0.0598 21 14 2.4023 9.4376 -0.5469 22 1 1.4193 9.9851 -1.5160 23 1 3.6541 9.0795 -1.2611 24 1 2.6985 10.4593 0.4892 25 6 2.0584 -0.7548 1.2372 26 6 2.3299 -2.1897 0.7186 27 6 2.8885 -1.9396 -0.7043 28 6 2.0571 -0.7529 -1.2341 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3633 -1.0275 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 1.7055 1.9511 -0.8962 33 1 3.1435 1.4273 0.0125 34 1 2.4493 3.9093 0.7997 35 1 -0.7326 4.5085 2.9967 36 1 -0.2477 4.6752 1.2786 37 1 0.5415 7.5565 4.3778 38 1 -0.3236 6.0021 4.6035 39 1 2.5524 6.5050 4.8433 40 1 1.6877 4.9523 5.0713 41 1 0.1533 6.6558 0.2960 42 1 2.9806 -0.2987 1.5973 43 1 1.3057 -0.7693 2.0255 44 1 1.4052 -2.7653 0.6749 45 1 3.0700 -2.6921 1.3413 46 1 2.7415 -2.8187 -1.3318 47 1 3.9448 -1.6748 -0.6583 48 1 1.2229 -1.1192 -1.8324 49 1 2.6860 -0.0943 -1.8329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110521557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:48:58 Heat of formation + Delta-G solvation = -32.225975 kcal Electronic energy + Delta-G solvation = -26791.449530 eV Core-core repulsion = 23331.765711 eV Total energy + Delta-G solvation = -3459.683819 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58540 -40.62203 -38.81306 -35.34426 -34.60168 -33.11396 -30.91839 -30.66418 -29.85866 -29.56860 -28.28297 -25.97230 -25.60146 -23.07043 -21.67956 -21.54286 -21.24827 -20.42277 -19.55239 -19.48852 -17.92474 -17.34103 -16.58190 -16.34060 -16.08294 -15.80171 -15.57452 -15.44302 -15.21244 -14.82066 -14.47840 -14.22948 -14.02211 -13.73764 -13.44421 -13.30257 -13.05941 -12.68267 -12.58484 -12.49304 -12.39336 -12.18300 -12.06414 -11.95020 -11.92629 -11.90300 -11.65372 -11.56570 -11.50724 -11.36055 -11.33610 -11.28625 -11.12256 -10.60673 -10.41126 -9.89684 -8.97732 -8.24713 -5.25474 1.59208 1.66604 1.74156 1.84330 2.35009 2.64333 3.20665 3.36662 3.60634 3.67330 3.79174 3.86606 3.95234 4.05804 4.13257 4.28173 4.34119 4.35598 4.36808 4.48856 4.50366 4.56241 4.57471 4.64066 4.67530 4.70253 4.80233 4.81295 4.85523 4.88892 4.99786 5.03555 5.04511 5.06559 5.15572 5.20149 5.26268 5.27034 5.35979 5.44198 5.45922 5.47686 5.51774 5.59636 5.64548 5.75954 6.31210 6.67813 6.86729 7.36190 7.70434 8.47628 9.13524 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.003869 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.234895 B = 7236.076819 C = 8100.657331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C -0.128 4.128 4 C 0.508 3.492 5 O -0.567 6.567 6 N -0.713 5.713 7 C 0.141 3.859 8 H 0.088 0.912 9 C -0.128 4.128 10 C 0.131 3.869 11 H 0.068 0.932 12 C -0.126 4.126 13 C -0.116 4.116 14 C 0.125 3.875 15 H 0.097 0.903 16 N -0.615 5.615 17 C -0.317 4.317 18 H 0.063 0.937 19 C -0.079 4.079 20 N -0.957 5.957 21 Si 1.114 2.886 22 H -0.298 1.298 23 H -0.275 1.275 24 H -0.286 1.286 25 C -0.105 4.105 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.116 4.116 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.260 0.740 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.939 -15.809 1.903 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.045 4.045 3 C -0.168 4.168 4 C 0.296 3.704 5 O -0.447 6.447 6 N -0.362 5.362 7 C 0.034 3.966 8 H 0.106 0.894 9 C -0.169 4.169 10 C 0.024 3.976 11 H 0.086 0.914 12 C -0.165 4.165 13 C -0.156 4.156 14 C 0.018 3.982 15 H 0.115 0.885 16 N -0.339 5.339 17 C -0.446 4.446 18 H 0.081 0.919 19 C -0.275 4.275 20 N -0.601 5.601 21 Si 0.940 3.060 22 H -0.224 1.224 23 H -0.201 1.201 24 H -0.213 1.213 25 C -0.143 4.143 26 C -0.161 4.161 27 C -0.157 4.157 28 C -0.154 4.154 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.243 -14.839 1.275 15.486 hybrid contribution 0.164 -0.542 0.583 0.813 sum 4.407 -15.381 1.858 16.108 Atomic orbital electron populations 1.22070 0.95002 1.01604 1.01688 1.20899 0.95359 0.92113 0.96093 1.21927 1.03019 0.96314 0.95510 1.21169 0.79843 0.81382 0.87996 1.90569 1.38713 1.67024 1.48387 1.46111 1.52064 1.11972 1.26029 1.22214 0.93925 0.92862 0.87556 0.89397 1.23171 0.97353 0.96835 0.99516 1.22979 0.87208 0.94002 0.93430 0.91366 1.22889 0.97998 0.99796 0.95848 1.22898 0.96586 0.99949 0.96124 1.23485 0.96273 0.86902 0.91502 0.88498 1.46731 1.04786 1.37658 1.44684 1.19941 0.92667 1.22952 1.08999 0.91902 1.26879 0.97234 1.06610 0.96769 1.70855 1.20782 1.23478 1.44999 0.82841 0.74583 0.73407 0.75208 1.22436 1.20070 1.21257 1.22367 0.99788 0.95483 0.96616 1.22532 1.00881 0.95986 0.96718 1.22341 0.99459 0.97922 0.95957 1.22292 0.99880 0.97130 0.96051 0.93656 0.92306 0.92462 0.88853 0.87378 0.76457 0.91036 0.94871 0.93285 0.90357 0.91793 0.89765 0.92916 0.92784 0.92853 0.91635 0.91052 0.90627 0.91197 0.91216 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 7.83 71.98 0.56 -3.25 16 2 C -0.04 -1.02 0.63 -51.46 -0.03 -1.05 16 3 C -0.13 -3.17 4.40 29.85 0.13 -3.04 16 4 C 0.51 16.34 7.29 87.66 0.64 16.97 16 5 O -0.57 -20.76 11.80 -3.07 -0.04 -20.80 16 6 N -0.71 -24.45 5.05 -435.94 -2.20 -26.66 16 7 C 0.14 5.11 2.79 46.39 0.13 5.23 16 8 H 0.09 3.08 7.24 -2.38 -0.02 3.07 16 9 C -0.13 -5.19 6.07 31.99 0.19 -4.99 16 10 C 0.13 5.82 3.80 46.23 0.18 6.00 16 11 H 0.07 3.57 6.56 -2.39 -0.02 3.55 16 12 C -0.13 -4.54 6.44 32.21 0.21 -4.33 16 13 C -0.12 -3.77 6.46 32.38 0.21 -3.56 16 14 C 0.13 4.67 5.09 46.39 0.24 4.91 16 15 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 16 N -0.62 -28.87 2.83 -614.39 -1.74 -30.61 16 17 C -0.32 -16.84 10.42 84.03 0.88 -15.96 16 18 H 0.06 3.29 7.92 -2.91 -0.02 3.27 16 19 C -0.08 -4.38 5.34 84.86 0.45 -3.93 16 20 N -0.96 -57.16 12.66 21.65 0.27 -56.89 16 21 Si 1.11 50.08 29.97 68.60 2.06 52.14 16 22 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 25 C -0.10 -2.45 4.70 31.70 0.15 -2.30 16 26 C -0.12 -2.21 6.91 31.91 0.22 -1.99 16 27 C -0.12 -1.86 6.83 31.67 0.22 -1.64 16 28 C -0.12 -2.08 6.11 31.32 0.19 -1.89 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.84 5.48 -2.39 -0.01 1.83 16 32 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.11 2.26 8.13 -2.39 -0.02 2.24 16 34 H 0.40 14.05 8.66 -92.71 -0.80 13.25 16 35 H 0.07 2.63 7.82 -2.38 -0.02 2.61 16 36 H 0.03 1.51 7.55 -2.39 -0.02 1.50 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.42 7.82 -2.39 -0.02 2.40 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 2.27 7.84 -2.39 -0.02 2.26 16 41 H 0.26 15.60 5.67 -92.71 -0.53 15.07 16 42 H 0.05 1.29 7.84 -2.39 -0.02 1.27 16 43 H 0.05 1.49 7.12 -2.39 -0.02 1.47 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 48 H 0.07 1.21 7.67 -2.39 -0.02 1.19 16 49 H 0.07 1.20 7.67 -2.39 -0.02 1.18 16 Total: -1.00 -64.05 367.16 3.27 -60.78 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: 0.36 Total: 36.87 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 4.56 Total: -14.83 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -3.67 Total: -114.16 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.04 Total: -20.80 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.06 Total: 52.14 kcal Total: -64.05 3.27 -60.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110521557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.551 kcal (2) G-P(sol) polarization free energy of solvation -64.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds