Wall clock time and date at job start Fri Apr 10 2020 21:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 110.78151 * 2 1 4 4 C 1.54326 * 110.72244 * 123.23745 * 2 1 3 5 5 N 1.47020 * 107.27268 * 140.55549 * 4 2 1 6 6 C 1.34774 * 125.64914 * 181.02706 * 5 4 2 7 7 O 1.21289 * 120.00116 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.00223 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47010 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.64112 * 305.41817 * 9 8 6 11 11 C 1.53020 * 109.64313 * 66.05798 * 9 8 6 12 12 C 1.50069 * 110.14686 * 169.11732 * 11 9 8 13 13 C 1.29444 * 124.07734 * 342.87071 * 12 11 9 14 14 C 1.50070 * 124.07290 * 0.46469 * 13 12 11 15 15 C 1.53022 * 110.14859 * 342.87281 * 14 13 12 16 16 C 1.47424 * 108.70202 * 1.28625 * 5 4 2 17 17 C 1.55123 * 104.72556 * 335.55660 * 16 5 4 18 18 H 1.08996 * 110.94208 * 155.28826 * 17 16 5 19 19 N 1.46507 * 111.19091 * 279.18988 * 17 16 5 20 20 C 1.36929 * 119.99860 * 267.18690 * 19 17 16 21 21 H 1.08003 * 120.00060 * 359.97438 * 20 19 17 22 22 C 1.38817 * 120.00038 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99987 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99800 * 359.97438 * 22 20 19 25 25 H 1.48492 * 109.47312 * 90.00230 * 24 22 20 26 26 H 1.48504 * 109.46912 * 210.00251 * 24 22 20 27 27 H 1.48499 * 109.47324 * 329.99851 * 24 22 20 28 28 H 1.08999 * 109.46596 * 298.21392 * 1 2 3 29 29 H 1.08991 * 109.46783 * 58.21443 * 1 2 3 30 30 H 1.08998 * 109.46790 * 178.21890 * 1 2 3 31 31 H 1.08997 * 109.47295 * 181.78221 * 3 2 1 32 32 H 1.09003 * 109.46751 * 301.78615 * 3 2 1 33 33 H 1.08997 * 109.47281 * 61.78464 * 3 2 1 34 34 H 1.08999 * 109.87872 * 21.13654 * 4 2 1 35 35 H 1.08996 * 110.01131 * 260.04773 * 4 2 1 36 36 H 1.08997 * 109.46931 * 59.99762 * 8 6 5 37 37 H 1.09000 * 109.46747 * 299.99642 * 8 6 5 38 38 H 1.09003 * 109.35547 * 289.32336 * 11 9 8 39 39 H 1.09003 * 109.35869 * 48.90989 * 11 9 8 40 40 H 1.07997 * 117.96174 * 162.88752 * 12 11 9 41 41 H 1.08001 * 117.96296 * 180.49198 * 13 12 11 42 42 H 1.08995 * 109.35451 * 222.66419 * 14 13 12 43 43 H 1.08996 * 109.35620 * 103.08049 * 14 13 12 44 44 H 1.09002 * 109.64212 * 289.75402 * 15 14 13 45 45 H 1.08997 * 109.64550 * 169.12001 * 15 14 13 46 46 H 1.09001 * 110.36314 * 94.48532 * 16 5 4 47 47 H 1.09000 * 110.36858 * 216.79992 * 16 5 4 48 48 H 0.97002 * 120.00088 * 87.18773 * 19 17 16 49 49 H 0.96999 * 119.99703 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0761 -0.7912 1.2073 5 7 3.2446 -1.5507 0.7390 6 6 3.9923 -2.3836 1.4898 7 8 3.7198 -2.5557 2.6590 8 6 5.1679 -3.1001 0.8767 9 6 5.8406 -3.9754 1.9361 10 1 6.1005 -3.3674 2.8026 11 6 4.8887 -5.0974 2.3563 12 6 5.6193 -6.1105 3.1882 13 6 6.9086 -6.2146 3.2376 14 6 7.8532 -5.3302 2.4776 15 6 7.1094 -4.6090 1.3515 16 6 3.4666 -1.2456 -0.6861 17 6 2.0790 -0.7955 -1.2138 18 1 2.1844 -0.1520 -2.0872 19 7 1.2271 -1.9488 -1.5144 20 6 1.2022 -2.4700 -2.7804 21 1 1.8102 -2.0306 -3.5574 22 6 0.3954 -3.5632 -3.0652 23 7 0.3718 -4.0645 -4.2819 24 14 -0.6556 -4.3236 -1.7211 25 1 -1.9851 -3.6626 -1.6988 26 1 -0.8284 -5.7741 -1.9889 27 1 0.0112 -4.1389 -0.4072 28 1 -0.3632 0.4859 0.9056 29 1 -0.3632 0.5413 -0.8735 30 1 -0.3633 -1.0272 -0.0319 31 1 3.1621 1.4058 -0.0320 32 1 1.6956 1.9622 -0.8736 33 1 1.7476 1.9426 0.9055 34 1 1.3130 -1.4757 1.5776 35 1 2.3736 -0.1043 1.9996 36 1 5.8840 -2.3688 0.5020 37 1 4.8230 -3.7257 0.0535 38 1 4.0683 -4.6765 2.9376 39 1 4.4869 -5.5825 1.4667 40 1 5.0328 -6.7956 3.7824 41 1 7.3307 -6.9862 3.8645 42 1 8.6526 -5.9368 2.0521 43 1 8.2834 -4.5936 3.1561 44 1 6.8374 -5.3243 0.5752 45 1 7.7467 -3.8314 0.9306 46 1 4.1947 -0.4415 -0.7929 47 1 3.8032 -2.1362 -1.2168 48 1 0.6808 -2.3433 -0.8167 49 1 -0.1922 -4.8281 -4.4809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996121931.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:48:37 Heat of formation + Delta-G solvation = -40.226606 kcal Electronic energy + Delta-G solvation = -26550.666094 eV Core-core repulsion = 23090.635342 eV Total energy + Delta-G solvation = -3460.030753 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48514 -40.01876 -38.70797 -35.79582 -34.68077 -33.66516 -33.01546 -31.63533 -29.77255 -29.06361 -28.05319 -26.64946 -25.39793 -24.09155 -23.01449 -22.17763 -20.58164 -19.98236 -19.36664 -18.89353 -17.85279 -17.29789 -16.83526 -16.61685 -16.40140 -15.93343 -15.39800 -15.15269 -14.99906 -14.76911 -14.53728 -14.24664 -14.08135 -13.85151 -13.67330 -13.59376 -13.36934 -13.15788 -13.11500 -12.95598 -12.92314 -12.81676 -12.67113 -12.46551 -12.29004 -11.94606 -11.84737 -11.65817 -11.59926 -11.52869 -11.32905 -11.04749 -11.00624 -10.67226 -9.87401 -9.70220 -9.21617 -8.03377 -5.34039 1.31754 1.34143 1.38769 1.40078 1.65081 2.08502 2.43894 3.26919 3.35488 3.55092 3.69116 3.72049 3.81054 3.82474 3.99750 4.09085 4.23135 4.29056 4.37796 4.41827 4.45573 4.53896 4.58607 4.67950 4.68935 4.72631 4.76301 4.78721 4.86774 4.88555 4.91394 4.99906 5.03629 5.06279 5.08988 5.11289 5.18690 5.28303 5.32789 5.35298 5.43463 5.48672 5.52213 5.77169 5.79617 6.06522 6.21940 6.59059 7.06911 7.19326 7.84045 8.00945 9.17899 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.012310 B = 0.004646 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.953215 B = 6025.275000 C = 7264.915736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.080 4.080 3 C -0.124 4.124 4 C 0.118 3.882 5 N -0.610 5.610 6 C 0.519 3.481 7 O -0.584 6.584 8 C -0.127 4.127 9 C -0.063 4.063 10 H 0.068 0.932 11 C -0.093 4.093 12 C -0.169 4.169 13 C -0.157 4.157 14 C -0.090 4.090 15 C -0.113 4.113 16 C 0.077 3.923 17 C 0.170 3.830 18 H 0.088 0.912 19 N -0.738 5.738 20 C -0.217 4.217 21 H 0.073 0.927 22 C -0.050 4.050 23 N -0.977 5.977 24 Si 0.932 3.068 25 H -0.277 1.277 26 H -0.300 1.300 27 H -0.271 1.271 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.068 0.932 48 H 0.361 0.639 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.177 6.534 12.755 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.081 4.081 3 C -0.182 4.182 4 C -0.004 4.004 5 N -0.343 5.343 6 C 0.309 3.691 7 O -0.465 6.465 8 C -0.166 4.166 9 C -0.082 4.082 10 H 0.087 0.913 11 C -0.130 4.130 12 C -0.187 4.187 13 C -0.175 4.175 14 C -0.127 4.127 15 C -0.151 4.151 16 C -0.048 4.048 17 C 0.060 3.940 18 H 0.106 0.894 19 N -0.380 5.380 20 C -0.348 4.348 21 H 0.091 0.909 22 C -0.242 4.242 23 N -0.628 5.628 24 Si 0.762 3.238 25 H -0.203 1.203 26 H -0.227 1.227 27 H -0.197 1.197 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.134 0.866 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.086 0.914 48 H 0.194 0.806 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.109 6.361 13.175 19.644 hybrid contribution -1.385 -1.266 0.533 1.951 sum 11.724 5.095 13.708 18.743 Atomic orbital electron populations 1.21645 0.93430 1.00987 1.02481 1.21925 0.96347 0.96621 0.93235 1.21715 1.01270 0.92087 1.03096 1.22020 0.87304 0.94011 0.97114 1.48547 1.29491 1.43993 1.12242 1.20930 0.84260 0.78212 0.85652 1.90618 1.72658 1.65097 1.18159 1.21772 0.95247 0.99952 0.99661 1.20887 0.95204 0.95010 0.97086 0.91306 1.20547 0.98415 0.95199 0.98839 1.22101 0.96444 0.99555 1.00624 1.22297 0.94613 1.00243 1.00364 1.20500 0.97289 0.98113 0.96760 1.21685 0.95350 1.00116 0.97904 1.23324 1.00295 1.01486 0.79676 1.21677 0.88475 0.87841 0.96006 0.89388 1.42764 1.51699 1.35426 1.08092 1.19076 1.19672 1.08773 0.87254 0.90868 1.25194 1.01902 0.99664 0.97484 1.69822 1.44901 1.27611 1.20499 0.85761 0.80112 0.77686 0.80215 1.20329 1.22686 1.19731 0.90960 0.91692 0.94916 0.91632 0.91170 0.91087 0.94372 0.90756 0.86319 0.89118 0.92272 0.92483 0.88238 0.86643 0.89265 0.90072 0.91966 0.89511 0.88460 0.91372 0.80568 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.16 71.98 0.59 -2.93 16 2 C -0.08 -2.10 0.80 -50.99 -0.04 -2.14 16 3 C -0.12 -2.36 8.44 71.98 0.61 -1.75 16 4 C 0.12 3.50 6.03 86.73 0.52 4.02 16 5 N -0.61 -18.81 3.32 -811.36 -2.70 -21.51 16 6 C 0.52 16.82 7.61 87.66 0.67 17.48 16 7 O -0.58 -22.49 14.42 -3.06 -0.04 -22.53 16 8 C -0.13 -3.22 4.18 29.85 0.12 -3.09 16 9 C -0.06 -1.55 1.87 -10.65 -0.02 -1.57 16 10 H 0.07 1.83 7.93 -2.39 -0.02 1.81 16 11 C -0.09 -2.67 5.05 29.66 0.15 -2.52 16 12 C -0.17 -4.18 9.80 27.04 0.27 -3.92 16 13 C -0.16 -3.18 9.80 27.04 0.27 -2.92 16 14 C -0.09 -1.51 6.12 29.66 0.18 -1.33 16 15 C -0.11 -2.12 5.31 30.73 0.16 -1.95 16 16 C 0.08 2.21 6.08 86.93 0.53 2.73 16 17 C 0.17 5.49 2.96 46.46 0.14 5.63 16 18 H 0.09 2.79 7.99 -2.39 -0.02 2.77 16 19 N -0.74 -31.72 4.37 -316.01 -1.38 -33.11 16 20 C -0.22 -11.40 10.44 84.04 0.88 -10.53 16 21 H 0.07 4.11 8.06 -2.91 -0.02 4.08 16 22 C -0.05 -2.87 5.50 84.86 0.47 -2.40 16 23 N -0.98 -60.62 13.97 21.65 0.30 -60.32 16 24 Si 0.93 45.90 27.73 68.60 1.90 47.80 16 25 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 27 H -0.27 -12.87 6.52 99.48 0.65 -12.23 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 30 H 0.03 1.07 6.34 -2.39 -0.02 1.06 16 31 H 0.06 1.14 7.42 -2.39 -0.02 1.13 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.04 1.30 7.82 -2.39 -0.02 1.28 16 35 H 0.07 2.01 7.85 -2.39 -0.02 1.99 16 36 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.09 2.44 7.80 -2.39 -0.02 2.42 16 38 H 0.06 2.04 6.31 -2.39 -0.02 2.02 16 39 H 0.06 1.72 8.06 -2.39 -0.02 1.70 16 40 H 0.10 2.34 8.06 -2.91 -0.02 2.32 16 41 H 0.12 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 44 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 45 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.10 2.11 7.70 -2.39 -0.02 2.09 16 47 H 0.07 2.18 7.48 -2.39 -0.02 2.16 16 48 H 0.36 16.07 4.19 -92.71 -0.39 15.68 16 49 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -68.22 375.35 4.03 -64.19 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.46 Total: 32.64 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.48 Total: -7.17 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -3.78 Total: -114.93 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.04 Total: -22.53 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Total: -68.22 4.03 -64.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996121931.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.963 kcal (2) G-P(sol) polarization free energy of solvation -68.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds