Wall clock time and date at job start Fri Apr 10 2020 21:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47693 * 2 1 4 4 C 1.52991 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.09000 * 115.56209 * 29.31590 * 4 3 2 6 6 C 1.52998 * 117.50176 * 243.62114 * 4 3 2 7 7 C 1.53003 * 117.49994 * 174.99456 * 4 3 2 8 8 H 1.09000 * 117.49738 * 359.97438 * 7 4 3 9 9 C 1.50698 * 117.50392 * 214.98132 * 7 4 3 10 10 O 1.21280 * 119.99822 * 0.02562 * 9 7 4 11 11 N 1.34777 * 120.00234 * 180.02562 * 9 7 4 12 12 C 1.47659 * 134.45598 * 180.02562 * 11 9 7 13 13 C 1.53516 * 85.97687 * 204.27574 * 12 11 9 14 14 C 1.47668 * 134.45699 * 359.94738 * 11 9 7 15 15 C 1.52675 * 113.57038 * 91.01629 * 13 12 11 16 16 C 1.53330 * 109.11098 * 73.81073 * 15 13 12 17 17 N 1.46883 * 108.76675 * 52.40409 * 16 15 13 18 18 C 1.36930 * 120.46765 * 124.46871 * 17 16 15 19 19 H 1.07995 * 120.00572 * 332.28945 * 18 17 16 20 20 C 1.38817 * 120.00146 * 152.28694 * 18 17 16 21 21 N 1.31615 * 120.00652 * 160.13528 * 20 18 17 22 22 Si 1.86810 * 119.99624 * 340.13961 * 20 18 17 23 23 H 1.48500 * 109.46989 * 94.81006 * 22 20 18 24 24 H 1.48499 * 109.47205 * 334.80967 * 22 20 18 25 25 H 1.48504 * 109.46659 * 214.80922 * 22 20 18 26 26 C 1.46886 * 119.06357 * 304.74828 * 17 16 15 27 27 C 1.52672 * 113.56088 * 222.22868 * 13 12 11 28 28 H 1.09007 * 109.46722 * 60.00166 * 1 2 3 29 29 H 1.08996 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46707 * 300.00766 * 1 2 3 31 31 H 1.08998 * 109.47422 * 239.99339 * 2 1 3 32 32 H 1.09007 * 109.46722 * 119.99833 * 2 1 3 33 33 H 1.09002 * 109.46882 * 59.99575 * 3 2 1 34 34 H 1.08997 * 109.46811 * 299.99836 * 3 2 1 35 35 H 1.08998 * 117.49996 * 145.02083 * 6 4 3 36 36 H 1.08998 * 117.49533 * 359.97438 * 6 4 3 37 37 H 1.08998 * 113.79640 * 90.00992 * 12 11 9 38 38 H 1.09000 * 113.79013 * 318.53594 * 12 11 9 39 39 H 1.09008 * 113.78555 * 41.44871 * 14 11 9 40 40 H 1.08999 * 113.79109 * 269.98914 * 14 11 9 41 41 H 1.09001 * 109.53135 * 313.91695 * 15 13 12 42 42 H 1.09000 * 109.52625 * 193.69793 * 15 13 12 43 43 H 1.09003 * 109.59100 * 292.61818 * 16 15 13 44 44 H 1.09002 * 109.71097 * 172.25367 * 16 15 13 45 45 H 0.96995 * 120.00606 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.58534 * 175.03981 * 26 17 16 47 47 H 1.09006 * 109.58570 * 295.46851 * 26 17 16 48 48 H 1.09000 * 109.52903 * 46.08277 * 27 13 12 49 49 H 1.08996 * 109.52866 * 166.22195 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0406 0.5849 -0.4805 6 6 4.2761 2.0455 1.2166 7 6 4.2767 2.7943 -0.1177 8 1 3.6515 3.6837 -0.1964 9 6 5.5698 2.8384 -0.8903 10 8 6.0123 1.8260 -1.3903 11 7 6.2346 4.0030 -1.0255 12 6 7.4886 4.4064 -1.6926 13 6 7.5187 5.5712 -0.6931 14 6 6.0001 5.3870 -0.5673 15 6 8.2822 5.2546 0.5906 16 6 9.7861 5.2487 0.2918 17 7 10.1398 6.5074 -0.3776 18 6 11.1176 7.3163 0.1366 19 1 11.3216 7.3098 1.1971 20 6 11.8469 8.1449 -0.7052 21 7 12.4910 9.1815 -0.2124 22 14 11.9139 7.7886 -2.5378 23 1 10.8710 8.5832 -3.2350 24 1 11.6719 6.3420 -2.7701 25 1 13.2523 8.1575 -3.0651 26 6 9.4254 6.8892 -1.6030 27 6 7.9234 6.9031 -1.3201 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.6768 1.9563 0.8900 34 1 1.6769 1.9562 -0.8900 35 1 5.2110 1.5847 1.5356 36 1 3.6506 2.4427 2.0160 37 1 7.3550 4.7190 -2.7282 38 1 8.3041 3.6949 -1.5632 39 1 5.6322 5.4547 0.4566 40 1 5.4243 5.9908 -1.2686 41 1 7.9805 4.2752 0.9618 42 1 8.0628 6.0136 1.3416 43 1 10.0260 4.4084 -0.3597 44 1 10.3456 5.1605 1.2231 45 1 13.0003 9.7606 -0.8007 46 1 9.7455 7.8823 -1.9182 47 1 9.6393 6.1668 -2.3908 48 1 7.3770 7.0481 -2.2521 49 1 7.6912 7.7155 -0.6315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050653549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:49:28 Heat of formation + Delta-G solvation = 32.572321 kcal Electronic energy + Delta-G solvation = -25644.712368 eV Core-core repulsion = 22187.838414 eV Total energy + Delta-G solvation = -3456.873954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -40.83318 -39.19533 -37.14014 -36.10059 -34.14453 -32.48229 -30.89768 -30.46365 -28.16973 -27.20472 -26.47048 -24.17564 -23.37370 -22.81301 -22.20003 -21.07445 -20.74453 -19.01765 -18.15264 -17.28138 -16.47032 -16.10339 -15.73867 -15.49300 -15.23739 -14.87648 -14.23276 -14.15157 -13.85511 -13.74954 -13.53486 -13.29407 -13.06566 -12.85172 -12.52145 -12.42410 -12.31937 -12.12491 -11.86877 -11.73810 -11.62499 -11.51212 -11.34625 -11.15504 -10.84651 -10.59586 -10.49518 -10.47105 -10.26159 -10.07498 -9.95108 -9.91301 -9.56219 -9.38478 -8.66816 -8.60403 -6.97857 -5.95704 -3.32267 2.45208 2.78840 3.30164 3.48238 3.50703 3.61187 4.14129 4.43742 4.47420 4.51685 4.53768 4.71219 4.79217 4.83641 4.90512 4.95046 5.00338 5.14693 5.20213 5.32868 5.35751 5.38293 5.39129 5.45420 5.47336 5.47923 5.52026 5.65933 5.71530 5.74340 5.81407 5.87320 5.89042 5.92647 5.96649 6.02321 6.10590 6.14759 6.27714 6.33360 6.41598 6.58925 6.64376 6.65970 6.90303 7.74502 7.96072 8.17880 8.32042 8.93604 9.71207 10.08654 11.20239 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.039865 B = 0.002643 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.201816 B =10592.956044 C =10738.104643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.117 0.883 6 C -0.147 4.147 7 C -0.183 4.183 8 H 0.119 0.881 9 C 0.562 3.438 10 O -0.548 6.548 11 N -0.636 5.636 12 C 0.115 3.885 13 C -0.076 4.076 14 C 0.105 3.895 15 C -0.108 4.108 16 C 0.150 3.850 17 N -0.604 5.604 18 C -0.259 4.259 19 H 0.085 0.915 20 C 0.023 3.977 21 N -0.909 5.909 22 Si 0.883 3.117 23 H -0.289 1.289 24 H -0.269 1.269 25 H -0.304 1.304 26 C 0.128 3.872 27 C -0.121 4.121 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.022 0.978 44 H 0.065 0.935 45 H 0.262 0.738 46 H 0.073 0.927 47 H 0.026 0.974 48 H 0.058 0.942 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.225 -12.255 0.894 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.138 4.138 5 H 0.135 0.865 6 C -0.185 4.185 7 C -0.204 4.204 8 H 0.137 0.863 9 C 0.352 3.648 10 O -0.426 6.426 11 N -0.370 5.370 12 C -0.007 4.007 13 C -0.077 4.077 14 C -0.018 4.018 15 C -0.147 4.147 16 C 0.024 3.976 17 N -0.328 5.328 18 C -0.387 4.387 19 H 0.103 0.897 20 C -0.176 4.176 21 N -0.552 5.552 22 Si 0.713 3.287 23 H -0.217 1.217 24 H -0.194 1.194 25 H -0.232 1.232 26 C 0.002 3.998 27 C -0.160 4.160 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.040 0.960 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.043 0.957 48 H 0.076 0.924 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.954 -12.855 0.635 25.449 hybrid contribution 0.068 0.137 -1.173 1.183 sum -21.886 -12.718 -0.537 25.318 Atomic orbital electron populations 1.21782 0.95869 1.01638 1.01766 1.21504 0.95633 0.96484 1.02381 1.21238 0.91915 0.97380 1.02159 1.22457 0.94613 0.95468 1.01225 0.86510 1.23090 1.03083 1.02002 0.90279 1.22218 0.97508 0.98541 1.02180 0.86266 1.19307 0.83866 0.81867 0.79778 1.90684 1.68577 1.33460 1.49929 1.49977 1.25374 1.07317 1.54337 1.23298 0.85605 0.94945 0.96870 1.21985 0.93335 0.95510 0.96863 1.23426 0.97613 0.80423 1.00290 1.21749 0.97714 1.00495 0.94762 1.20906 0.91887 0.88030 0.96796 1.44303 1.40654 1.20221 1.27623 1.18922 1.10088 1.16356 0.93384 0.89738 1.25296 0.97395 0.97204 0.97734 1.69822 1.35423 1.14604 1.35368 0.86945 0.75742 0.78879 0.87103 1.21714 1.19415 1.23229 1.21227 0.89884 0.99316 0.89385 1.21884 0.99039 0.95406 0.99706 0.92763 0.92739 0.92776 0.91803 0.91768 0.91617 0.91475 0.88270 0.87852 0.89981 0.89937 0.90049 0.89784 0.92537 0.91223 0.95964 0.91644 0.92789 0.90927 0.95657 0.92358 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.83 5.89 -26.73 -0.16 -0.99 16 3 C -0.09 -0.65 5.50 -26.74 -0.15 -0.80 16 4 C -0.12 -1.14 5.25 -90.62 -0.48 -1.61 16 5 H 0.12 1.33 7.60 -51.93 -0.39 0.94 16 6 C -0.15 -1.34 9.88 -26.73 -0.26 -1.60 16 7 C -0.18 -1.94 5.66 -91.77 -0.52 -2.46 16 8 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 9 C 0.56 8.14 7.84 -10.99 -0.09 8.05 16 10 O -0.55 -10.00 16.99 5.56 0.09 -9.90 16 11 N -0.64 -8.63 3.44 -180.23 -0.62 -9.25 16 12 C 0.11 1.66 7.62 -3.15 -0.02 1.64 16 13 C -0.08 -1.07 0.77 -154.41 -0.12 -1.19 16 14 C 0.11 1.19 7.75 -3.16 -0.02 1.16 16 15 C -0.11 -1.67 5.22 -26.73 -0.14 -1.81 16 16 C 0.15 2.85 6.38 -3.66 -0.02 2.83 16 17 N -0.60 -13.77 2.74 -172.51 -0.47 -14.24 16 18 C -0.26 -7.06 10.02 -15.06 -0.15 -7.21 16 19 H 0.09 2.47 8.06 -52.49 -0.42 2.04 16 20 C 0.02 0.64 5.24 -17.43 -0.09 0.55 16 21 N -0.91 -27.51 13.97 55.49 0.78 -26.74 16 22 Si 0.88 22.04 24.36 -169.99 -4.14 17.90 16 23 H -0.29 -6.93 6.70 56.52 0.38 -6.55 16 24 H -0.27 -6.61 6.50 56.52 0.37 -6.24 16 25 H -0.30 -7.80 7.11 56.52 0.40 -7.39 16 26 C 0.13 2.62 4.04 -3.91 -0.02 2.60 16 27 C -0.12 -1.90 5.24 -26.98 -0.14 -2.04 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 0.73 8.03 -51.93 -0.42 0.32 16 37 H 0.08 1.11 8.07 -51.93 -0.42 0.70 16 38 H 0.08 1.32 7.41 -51.93 -0.38 0.93 16 39 H 0.08 0.81 8.09 -51.92 -0.42 0.39 16 40 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 41 H 0.06 0.82 8.01 -51.93 -0.42 0.40 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.02 0.42 7.49 -51.93 -0.39 0.03 16 44 H 0.07 1.26 7.92 -51.93 -0.41 0.84 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.07 1.66 4.38 -51.93 -0.23 1.43 16 47 H 0.03 0.52 7.04 -51.93 -0.37 0.15 16 48 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 49 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -31.96 379.93 -9.59 -41.55 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.94 Total: -1.64 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.01 Total: -3.41 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.32 Total: -50.23 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.96 -9.59 -41.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050653549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.124 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds