Wall clock time and date at job start Fri Apr 10 2020 21:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47693 * 2 1 4 4 C 1.52991 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.09000 * 115.56209 * 29.31590 * 4 3 2 6 6 C 1.52998 * 117.50176 * 243.62114 * 4 3 2 7 7 C 1.53003 * 117.49994 * 174.99456 * 4 3 2 8 8 H 1.09000 * 117.49738 * 359.97438 * 7 4 3 9 9 C 1.50698 * 117.50392 * 214.98132 * 7 4 3 10 10 O 1.21280 * 119.99822 * 0.02562 * 9 7 4 11 11 N 1.34777 * 120.00234 * 180.02562 * 9 7 4 12 12 C 1.47659 * 134.45598 * 180.02562 * 11 9 7 13 13 C 1.53516 * 85.97687 * 204.27574 * 12 11 9 14 14 C 1.47668 * 134.45699 * 359.94738 * 11 9 7 15 15 C 1.52675 * 113.57038 * 91.01629 * 13 12 11 16 16 C 1.53330 * 109.11098 * 73.81073 * 15 13 12 17 17 N 1.46883 * 108.76675 * 52.40409 * 16 15 13 18 18 C 1.36930 * 120.46765 * 124.46871 * 17 16 15 19 19 H 1.07995 * 120.00572 * 332.28945 * 18 17 16 20 20 C 1.38817 * 120.00146 * 152.28694 * 18 17 16 21 21 N 1.31615 * 120.00652 * 160.13528 * 20 18 17 22 22 Si 1.86810 * 119.99624 * 340.13961 * 20 18 17 23 23 H 1.48500 * 109.46989 * 94.81006 * 22 20 18 24 24 H 1.48499 * 109.47205 * 334.80967 * 22 20 18 25 25 H 1.48504 * 109.46659 * 214.80922 * 22 20 18 26 26 C 1.46886 * 119.06357 * 304.74828 * 17 16 15 27 27 C 1.52672 * 113.56088 * 222.22868 * 13 12 11 28 28 H 1.09007 * 109.46722 * 60.00166 * 1 2 3 29 29 H 1.08996 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46707 * 300.00766 * 1 2 3 31 31 H 1.08998 * 109.47422 * 239.99339 * 2 1 3 32 32 H 1.09007 * 109.46722 * 119.99833 * 2 1 3 33 33 H 1.09002 * 109.46882 * 59.99575 * 3 2 1 34 34 H 1.08997 * 109.46811 * 299.99836 * 3 2 1 35 35 H 1.08998 * 117.49996 * 145.02083 * 6 4 3 36 36 H 1.08998 * 117.49533 * 359.97438 * 6 4 3 37 37 H 1.08998 * 113.79640 * 90.00992 * 12 11 9 38 38 H 1.09000 * 113.79013 * 318.53594 * 12 11 9 39 39 H 1.09008 * 113.78555 * 41.44871 * 14 11 9 40 40 H 1.08999 * 113.79109 * 269.98914 * 14 11 9 41 41 H 1.09001 * 109.53135 * 313.91695 * 15 13 12 42 42 H 1.09000 * 109.52625 * 193.69793 * 15 13 12 43 43 H 1.09003 * 109.59100 * 292.61818 * 16 15 13 44 44 H 1.09002 * 109.71097 * 172.25367 * 16 15 13 45 45 H 0.96995 * 120.00606 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.58534 * 175.03981 * 26 17 16 47 47 H 1.09006 * 109.58570 * 295.46851 * 26 17 16 48 48 H 1.09000 * 109.52903 * 46.08277 * 27 13 12 49 49 H 1.08996 * 109.52866 * 166.22195 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0406 0.5849 -0.4805 6 6 4.2761 2.0455 1.2166 7 6 4.2767 2.7943 -0.1177 8 1 3.6515 3.6837 -0.1964 9 6 5.5698 2.8384 -0.8903 10 8 6.0123 1.8260 -1.3903 11 7 6.2346 4.0030 -1.0255 12 6 7.4886 4.4064 -1.6926 13 6 7.5187 5.5712 -0.6931 14 6 6.0001 5.3870 -0.5673 15 6 8.2822 5.2546 0.5906 16 6 9.7861 5.2487 0.2918 17 7 10.1398 6.5074 -0.3776 18 6 11.1176 7.3163 0.1366 19 1 11.3216 7.3098 1.1971 20 6 11.8469 8.1449 -0.7052 21 7 12.4910 9.1815 -0.2124 22 14 11.9139 7.7886 -2.5378 23 1 10.8710 8.5832 -3.2350 24 1 11.6719 6.3420 -2.7701 25 1 13.2523 8.1575 -3.0651 26 6 9.4254 6.8892 -1.6030 27 6 7.9234 6.9031 -1.3201 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.6768 1.9563 0.8900 34 1 1.6769 1.9562 -0.8900 35 1 5.2110 1.5847 1.5356 36 1 3.6506 2.4427 2.0160 37 1 7.3550 4.7190 -2.7282 38 1 8.3041 3.6949 -1.5632 39 1 5.6322 5.4547 0.4566 40 1 5.4243 5.9908 -1.2686 41 1 7.9805 4.2752 0.9618 42 1 8.0628 6.0136 1.3416 43 1 10.0260 4.4084 -0.3597 44 1 10.3456 5.1605 1.2231 45 1 13.0003 9.7606 -0.8007 46 1 9.7455 7.8823 -1.9182 47 1 9.6393 6.1668 -2.3908 48 1 7.3770 7.0481 -2.2521 49 1 7.6912 7.7155 -0.6315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050653549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:49:23 Heat of formation + Delta-G solvation = 14.061917 kcal Electronic energy + Delta-G solvation = -25645.515039 eV Core-core repulsion = 22187.838414 eV Total energy + Delta-G solvation = -3457.676626 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 4.94 seconds Orbital eigenvalues (eV) -41.94584 -40.22760 -38.17830 -37.53758 -34.73304 -34.32390 -32.44664 -32.00313 -29.19842 -28.16151 -27.47134 -25.81764 -24.61848 -24.03595 -22.83710 -22.57408 -21.42823 -20.12519 -19.49895 -18.56053 -17.95716 -17.34328 -16.95949 -16.83042 -16.03546 -15.94547 -15.63251 -15.34476 -15.18636 -15.02529 -14.69947 -14.38202 -14.26189 -14.02145 -13.75001 -13.57716 -13.35006 -13.21696 -13.07520 -12.93368 -12.90066 -12.52362 -12.23084 -12.20534 -12.12565 -11.94718 -11.68190 -11.61663 -11.47429 -11.38664 -11.28934 -11.14630 -10.98274 -10.75411 -10.55781 -9.71537 -8.89396 -8.14587 -5.46473 1.29636 1.43145 1.44130 1.51322 1.78248 2.42411 2.84032 3.08732 3.27464 3.31549 3.42399 3.72456 3.78155 3.85751 3.94613 4.05821 4.13184 4.19889 4.29128 4.35850 4.36991 4.43965 4.52030 4.56668 4.60796 4.63926 4.70099 4.75480 4.78949 4.82738 4.85270 4.89266 4.94631 4.98523 5.00539 5.04534 5.08055 5.15450 5.21063 5.25527 5.31025 5.36390 5.40833 5.49427 5.51723 5.89746 6.14768 6.71381 6.94853 7.10454 7.65132 8.05004 9.05308 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.039865 B = 0.002643 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.201816 B =10592.956044 C =10738.104643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.120 4.120 5 H 0.090 0.910 6 C -0.136 4.136 7 C -0.186 4.186 8 H 0.146 0.854 9 C 0.553 3.447 10 O -0.598 6.598 11 N -0.636 5.636 12 C 0.108 3.892 13 C -0.077 4.077 14 C 0.122 3.878 15 C -0.095 4.095 16 C 0.145 3.855 17 N -0.618 5.618 18 C -0.245 4.245 19 H 0.051 0.949 20 C -0.036 4.036 21 N -0.958 5.958 22 Si 0.946 3.054 23 H -0.270 1.270 24 H -0.264 1.264 25 H -0.315 1.315 26 C 0.119 3.881 27 C -0.109 4.109 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.023 0.977 44 H 0.053 0.947 45 H 0.261 0.739 46 H 0.050 0.950 47 H 0.029 0.971 48 H 0.092 0.908 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.846 -12.410 0.508 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.119 4.119 4 C -0.139 4.139 5 H 0.108 0.892 6 C -0.173 4.173 7 C -0.207 4.207 8 H 0.164 0.836 9 C 0.345 3.655 10 O -0.480 6.480 11 N -0.369 5.369 12 C -0.015 4.015 13 C -0.078 4.078 14 C 0.001 3.999 15 C -0.134 4.134 16 C 0.020 3.980 17 N -0.342 5.342 18 C -0.374 4.374 19 H 0.069 0.931 20 C -0.230 4.230 21 N -0.604 5.604 22 Si 0.775 3.225 23 H -0.197 1.197 24 H -0.188 1.188 25 H -0.245 1.245 26 C -0.005 4.005 27 C -0.148 4.148 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.151 0.849 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.131 0.869 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.047 0.953 48 H 0.110 0.890 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.628 -13.018 0.251 28.746 hybrid contribution 1.244 0.105 -0.979 1.586 sum -24.384 -12.913 -0.728 27.602 Atomic orbital electron populations 1.21766 0.94912 1.01992 1.02189 1.21505 0.96438 0.96303 1.01891 1.21219 0.89976 0.97698 1.03046 1.22448 0.95971 0.94146 1.01347 0.89201 1.23179 1.02742 1.00982 0.90408 1.22258 0.95916 0.99977 1.02556 0.83628 1.20016 0.84792 0.81247 0.79436 1.90660 1.70095 1.35186 1.52062 1.50054 1.24848 1.08173 1.53849 1.23319 0.85767 0.94574 0.97802 1.21884 0.95752 0.94420 0.95752 1.23515 0.95093 0.78883 1.02446 1.21556 0.94829 1.01186 0.95782 1.21032 0.94602 0.86439 0.95929 1.44424 1.40284 1.21018 1.28494 1.18859 1.10565 1.15916 0.92100 0.93113 1.25902 0.97877 0.97306 1.01963 1.69951 1.37487 1.16120 1.36859 0.85918 0.75403 0.78985 0.82166 1.19689 1.18834 1.24485 1.21306 0.93019 0.97906 0.88307 1.21748 0.95445 0.96178 1.01474 0.92645 0.92505 0.92006 0.92899 0.91793 0.89879 0.91289 0.89818 0.84933 0.88692 0.92184 0.87840 0.86865 0.91392 0.91157 0.95863 0.92831 0.93035 0.93235 0.95269 0.88993 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.12 -1.47 5.89 30.60 0.18 -1.29 16 3 C -0.08 -0.98 5.50 30.59 0.17 -0.81 16 4 C -0.12 -2.08 5.25 -10.80 -0.06 -2.14 16 5 H 0.09 2.06 7.60 -2.39 -0.02 2.05 16 6 C -0.14 -2.10 9.88 30.60 0.30 -1.80 16 7 C -0.19 -3.40 5.66 -11.54 -0.07 -3.46 16 8 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 9 C 0.55 15.02 7.84 87.66 0.69 15.71 16 10 O -0.60 -21.81 16.99 -3.03 -0.05 -21.86 16 11 N -0.64 -15.37 3.44 -842.52 -2.90 -18.27 16 12 C 0.11 2.87 7.62 86.32 0.66 3.53 16 13 C -0.08 -1.93 0.77 -52.03 -0.04 -1.97 16 14 C 0.12 2.16 7.75 86.32 0.67 2.83 16 15 C -0.09 -2.74 5.22 30.60 0.16 -2.58 16 16 C 0.14 5.48 6.38 86.42 0.55 6.03 16 17 N -0.62 -28.01 2.74 -699.69 -1.92 -29.93 16 18 C -0.24 -13.65 10.02 84.04 0.84 -12.81 16 19 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 20 C -0.04 -2.08 5.24 84.86 0.45 -1.64 16 21 N -0.96 -59.79 13.97 21.65 0.30 -59.49 16 22 Si 0.95 46.20 24.36 68.60 1.67 47.87 16 23 H -0.27 -12.25 6.70 99.48 0.67 -11.58 16 24 H -0.26 -12.45 6.50 99.48 0.65 -11.80 16 25 H -0.32 -15.88 7.11 99.48 0.71 -15.18 16 26 C 0.12 4.69 4.04 86.25 0.35 5.04 16 27 C -0.11 -3.07 5.24 30.43 0.16 -2.91 16 28 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.75 8.14 -2.38 -0.02 0.74 16 33 H 0.08 0.73 7.87 -2.39 -0.02 0.71 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.13 1.29 8.03 -2.39 -0.02 1.27 16 37 H 0.10 2.29 8.07 -2.39 -0.02 2.27 16 38 H 0.06 1.86 7.41 -2.39 -0.02 1.85 16 39 H 0.10 1.47 8.09 -2.38 -0.02 1.45 16 40 H 0.11 1.47 8.09 -2.39 -0.02 1.45 16 41 H 0.07 1.83 8.01 -2.39 -0.02 1.81 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 43 H 0.02 0.88 7.49 -2.39 -0.02 0.86 16 44 H 0.05 2.10 7.92 -2.39 -0.02 2.08 16 45 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 46 H 0.05 2.18 4.38 -2.38 -0.01 2.17 16 47 H 0.03 1.13 7.04 -2.38 -0.02 1.12 16 48 H 0.09 2.02 8.12 -2.39 -0.02 2.00 16 49 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -72.74 379.93 3.62 -69.12 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.80 Total: 11.53 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.72 Total: 1.02 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -4.51 Total: -107.69 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.67 Total: 47.87 kcal Total: -72.74 3.62 -69.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050653549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.181 kcal (2) G-P(sol) polarization free energy of solvation -72.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.94 seconds