Wall clock time and date at job start Fri Apr 10 2020 21:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 C 1.52997 * 109.47711 * 120.00241 * 2 1 3 5 5 C 1.50704 * 109.47124 * 240.00373 * 2 1 3 6 6 O 1.21289 * 119.99532 * 2.12875 * 5 2 1 7 7 N 1.34771 * 120.00446 * 182.12863 * 5 2 1 8 8 C 1.49632 * 125.94828 * 175.85993 * 7 5 2 9 9 C 1.51525 * 102.65536 * 204.78458 * 8 7 5 10 10 H 1.09001 * 109.77666 * 71.75387 * 9 8 7 11 11 C 1.56034 * 99.08236 * 316.74709 * 9 8 7 12 12 H 1.09004 * 105.57868 * 296.14734 * 11 9 8 13 13 C 1.49369 * 125.94343 * 355.55045 * 7 5 2 14 14 C 1.50239 * 106.40817 * 182.72921 * 11 9 8 15 15 H 1.09002 * 114.87960 * 210.47063 * 14 11 9 16 16 C 1.56839 * 102.22609 * 85.48316 * 14 11 9 17 17 C 1.54010 * 106.11366 * 325.09369 * 16 14 11 18 18 C 1.51607 * 122.77975 * 202.98883 * 9 8 7 19 19 H 1.09003 * 113.34881 * 319.68647 * 18 9 8 20 20 C 1.56557 * 102.45450 * 195.83337 * 18 9 8 21 21 N 1.48568 * 104.60176 * 322.12001 * 20 18 9 22 22 C 1.36935 * 122.46730 * 145.11119 * 21 20 18 23 23 H 1.07994 * 120.00079 * 330.77765 * 22 21 20 24 24 C 1.38816 * 119.99649 * 150.78834 * 22 21 20 25 25 N 1.31620 * 119.99765 * 158.30261 * 24 22 21 26 26 Si 1.86799 * 119.99867 * 338.30080 * 24 22 21 27 27 H 1.48495 * 109.47104 * 95.39866 * 26 24 22 28 28 H 1.48501 * 109.46770 * 215.39693 * 26 24 22 29 29 H 1.48496 * 109.47059 * 335.39538 * 26 24 22 30 30 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47492 * 59.99382 * 1 2 3 32 32 H 1.09009 * 109.46833 * 299.99552 * 1 2 3 33 33 H 1.08995 * 109.47177 * 49.41100 * 3 2 1 34 34 H 1.08998 * 109.47285 * 169.41140 * 3 2 1 35 35 H 1.08998 * 109.47389 * 289.41189 * 3 2 1 36 36 H 1.09000 * 109.47206 * 70.08747 * 4 2 1 37 37 H 1.08999 * 109.47599 * 190.08914 * 4 2 1 38 38 H 1.09005 * 109.46995 * 310.09118 * 4 2 1 39 39 H 1.08998 * 110.76871 * 323.07487 * 8 7 5 40 40 H 1.08997 * 110.77496 * 86.30173 * 8 7 5 41 41 H 1.09000 * 110.40591 * 304.14409 * 13 7 5 42 42 H 1.09000 * 110.40634 * 66.56868 * 13 7 5 43 43 H 1.09008 * 110.11424 * 205.94676 * 16 14 11 44 44 H 1.08991 * 110.11885 * 84.24826 * 16 14 11 45 45 H 1.09002 * 109.46096 * 203.29806 * 17 16 14 46 46 H 1.09004 * 109.44671 * 83.33407 * 17 16 14 47 47 H 1.09004 * 110.40604 * 80.88414 * 20 18 9 48 48 H 1.09000 * 110.40616 * 203.34792 * 20 18 9 49 49 H 0.97003 * 119.99253 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 2.0323 -0.7103 -1.2305 6 8 1.2448 -1.1373 -2.0482 7 7 3.3566 -0.8712 -1.4225 8 6 3.9961 -1.6266 -2.5446 9 6 5.3377 -2.0182 -1.9590 10 1 5.1990 -2.7939 -1.2058 11 6 5.7081 -0.6692 -1.2680 12 1 5.8084 0.0557 -2.0759 13 6 4.4414 -0.3209 -0.5556 14 6 7.0761 -0.8571 -0.6760 15 1 7.2689 -0.2768 0.2263 16 6 8.0119 -0.5186 -1.8882 17 6 7.2833 -1.0276 -3.1460 18 6 6.5436 -2.3464 -2.8172 19 1 6.2975 -2.9343 -3.7015 20 6 7.4935 -3.0677 -1.8031 21 7 7.3109 -2.3279 -0.5277 22 6 7.3547 -2.9461 0.6934 23 1 7.0575 -3.9802 0.7861 24 6 7.7811 -2.2434 1.8121 25 7 7.4378 -2.6511 3.0155 26 14 8.8418 -0.7192 1.6094 27 1 7.9798 0.4897 1.6271 28 1 9.8206 -0.6457 2.7237 29 1 9.5684 -0.7903 0.3162 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 0.5138 0.8901 33 1 1.5307 2.0079 0.7804 34 1 3.1135 1.4484 0.1888 35 1 1.8391 1.8989 -0.9692 36 1 1.8313 -1.7877 1.1637 37 1 3.1151 -0.5680 1.3437 38 1 1.5373 -0.3220 2.1300 39 1 3.4117 -2.5112 -2.7977 40 1 4.1241 -0.9869 -3.4178 41 1 4.3409 0.7603 -0.4614 42 1 4.4188 -0.7925 0.4269 43 1 8.9688 -1.0288 -1.7770 44 1 8.1654 0.5585 -1.9539 45 1 8.0094 -1.2063 -3.9390 46 1 6.5624 -0.2793 -3.4755 47 1 7.1996 -4.1105 -1.6829 48 1 8.5287 -2.9992 -2.1374 49 1 7.7361 -2.1602 3.7972 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087405357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:52:39 Heat of formation + Delta-G solvation = 37.253956 kcal Electronic energy + Delta-G solvation = -28151.416271 eV Core-core repulsion = 24694.745327 eV Total energy + Delta-G solvation = -3456.670943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34347 -39.57524 -36.08804 -35.53879 -33.19867 -31.26304 -30.82127 -30.19386 -27.98882 -27.34676 -26.81526 -25.46912 -24.52363 -21.98566 -21.78081 -20.97329 -20.54415 -18.64477 -17.70790 -16.90338 -16.43539 -16.14599 -15.71425 -14.98475 -14.83912 -14.52975 -14.13349 -13.93585 -13.72920 -13.38430 -13.22839 -12.90845 -12.58152 -12.29185 -12.18324 -12.16255 -12.03998 -11.84240 -11.69683 -11.58653 -11.43916 -11.31542 -11.06395 -11.03613 -10.89402 -10.71688 -10.60465 -10.45473 -10.28735 -10.09709 -9.75764 -9.43665 -9.24904 -9.16473 -8.56771 -8.37003 -6.99451 -6.00363 -3.35046 2.86573 3.10449 3.22071 3.43706 3.45901 4.41596 4.46488 4.58715 4.67837 4.83360 4.91737 5.01399 5.11918 5.24508 5.27866 5.31976 5.38243 5.45965 5.53282 5.56106 5.61652 5.66052 5.75388 5.78305 5.79290 5.85403 5.89426 5.90994 5.96161 5.99876 6.06442 6.14365 6.15303 6.18404 6.25615 6.28116 6.33274 6.38976 6.48843 6.49847 6.56614 6.64300 6.74319 6.90078 6.94599 7.75951 7.80603 8.28232 8.38144 8.81430 9.64536 10.10099 11.15895 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.006076 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.317926 B = 4607.191907 C = 5543.515676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 C -0.149 4.149 4 C -0.150 4.150 5 C 0.539 3.461 6 O -0.554 6.554 7 N -0.617 5.617 8 C 0.122 3.878 9 C -0.094 4.094 10 H 0.100 0.900 11 C -0.134 4.134 12 H 0.066 0.934 13 C 0.110 3.890 14 C 0.172 3.828 15 H 0.091 0.909 16 C -0.138 4.138 17 C -0.112 4.112 18 C -0.091 4.091 19 H 0.085 0.915 20 C 0.147 3.853 21 N -0.606 5.606 22 C -0.252 4.252 23 H 0.083 0.917 24 C 0.028 3.972 25 N -0.905 5.905 26 Si 0.872 3.128 27 H -0.288 1.288 28 H -0.305 1.305 29 H -0.264 1.264 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.028 7.283 -8.585 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 C -0.206 4.206 4 C -0.207 4.207 5 C 0.328 3.672 6 O -0.432 6.432 7 N -0.350 5.350 8 C 0.000 4.000 9 C -0.114 4.114 10 H 0.119 0.881 11 C -0.155 4.155 12 H 0.084 0.916 13 C -0.011 4.011 14 C 0.066 3.934 15 H 0.108 0.892 16 C -0.177 4.177 17 C -0.150 4.150 18 C -0.111 4.111 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.331 5.331 22 C -0.380 4.380 23 H 0.100 0.900 24 C -0.172 4.172 25 N -0.548 5.548 26 Si 0.704 3.296 27 H -0.217 1.217 28 H -0.233 1.233 29 H -0.188 1.188 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.048 0.952 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.502 7.030 -8.800 13.006 hybrid contribution 0.697 0.975 0.120 1.205 sum -5.804 8.005 -8.680 13.157 Atomic orbital electron populations 1.21640 0.92219 1.02624 1.01633 1.20739 0.97490 0.96383 0.93920 1.22062 1.02354 0.93895 1.02304 1.22050 1.02746 1.00468 0.95423 1.20246 0.80527 0.79278 0.87151 1.90650 1.54672 1.51477 1.46437 1.49687 1.04800 1.52932 1.27615 1.21723 0.93762 0.95585 0.88914 1.21858 0.91686 0.99062 0.98751 0.88145 1.22190 0.95355 0.98276 0.99696 0.91614 1.21612 0.86190 0.97981 0.95316 1.21469 0.89933 0.86651 0.95352 0.89212 1.23185 0.99750 0.99579 0.95148 1.22141 0.98583 0.96991 0.97266 1.22177 0.94542 0.96903 0.97513 0.89714 1.22075 0.95360 0.94813 0.85480 1.45682 1.83201 1.02238 1.01992 1.18806 1.38175 0.98293 0.82758 0.89953 1.25248 0.98861 0.98037 0.95004 1.69851 1.45835 1.41492 0.97598 0.87081 0.81879 0.83249 0.77435 1.21700 1.23330 1.18847 0.92102 0.92219 0.92184 0.91496 0.91011 0.92518 0.92161 0.90639 0.91621 0.90874 0.92076 0.90948 0.89737 0.90681 0.92677 0.92562 0.92353 0.92623 0.95184 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 7.72 37.16 0.29 -1.23 16 2 C -0.08 -1.10 0.75 -155.66 -0.12 -1.22 16 3 C -0.15 -1.70 8.14 37.16 0.30 -1.40 16 4 C -0.15 -2.01 8.16 37.16 0.30 -1.71 16 5 C 0.54 8.93 6.55 -10.99 -0.07 8.86 16 6 O -0.55 -10.78 16.33 5.55 0.09 -10.68 16 7 N -0.62 -9.87 3.41 -171.63 -0.58 -10.46 16 8 C 0.12 1.87 6.69 -3.04 -0.02 1.85 16 9 C -0.09 -1.52 2.31 -90.45 -0.21 -1.73 16 10 H 0.10 1.97 7.09 -51.93 -0.37 1.60 16 11 C -0.13 -2.21 2.21 -92.12 -0.20 -2.42 16 12 H 0.07 0.99 5.11 -51.93 -0.27 0.73 16 13 C 0.11 1.73 5.09 -4.20 -0.02 1.71 16 14 C 0.17 3.31 3.10 -65.46 -0.20 3.11 16 15 H 0.09 1.93 3.45 -51.93 -0.18 1.75 16 16 C -0.14 -2.27 5.01 -24.13 -0.12 -2.39 16 17 C -0.11 -1.55 5.30 -25.29 -0.13 -1.68 16 18 C -0.09 -1.34 4.31 -88.49 -0.38 -1.72 16 19 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 20 C 0.15 2.64 5.74 -0.98 -0.01 2.63 16 21 N -0.61 -12.99 1.63 -158.56 -0.26 -13.25 16 22 C -0.25 -6.58 10.29 -15.06 -0.15 -6.74 16 23 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 24 C 0.03 0.76 5.39 -17.43 -0.09 0.66 16 25 N -0.91 -26.51 13.97 55.49 0.78 -25.74 16 26 Si 0.87 20.86 24.64 -169.99 -4.19 16.68 16 27 H -0.29 -6.61 6.58 56.52 0.37 -6.24 16 28 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 29 H -0.26 -6.06 6.00 56.52 0.34 -5.72 16 30 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 31 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 34 H 0.07 0.82 4.79 -51.93 -0.25 0.58 16 35 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 37 H 0.07 1.09 4.83 -51.93 -0.25 0.84 16 38 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 39 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.00 5.48 -51.93 -0.28 0.71 16 42 H 0.08 1.49 5.84 -51.93 -0.30 1.19 16 43 H 0.07 1.35 6.54 -51.92 -0.34 1.01 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.75 6.49 -51.93 -0.34 0.42 16 47 H 0.06 1.01 8.12 -51.93 -0.42 0.58 16 48 H 0.03 0.53 7.15 -51.93 -0.37 0.16 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -29.84 345.14 -7.89 -37.72 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -8.08 Total: 3.93 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.84 Total: -3.40 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.07 Total: -49.44 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.19 Total: 16.68 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.84 -7.89 -37.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087405357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.978 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds