Wall clock time and date at job start Fri Apr 10 2020 21:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 C 1.52997 * 109.47711 * 120.00241 * 2 1 3 5 5 C 1.50704 * 109.47124 * 240.00373 * 2 1 3 6 6 O 1.21289 * 119.99532 * 2.12875 * 5 2 1 7 7 N 1.34771 * 120.00446 * 182.12863 * 5 2 1 8 8 C 1.49632 * 125.94828 * 175.85993 * 7 5 2 9 9 C 1.51525 * 102.65536 * 204.78458 * 8 7 5 10 10 H 1.09001 * 109.77666 * 71.75387 * 9 8 7 11 11 C 1.56034 * 99.08236 * 316.74709 * 9 8 7 12 12 H 1.09004 * 105.57868 * 296.14734 * 11 9 8 13 13 C 1.49369 * 125.94343 * 355.55045 * 7 5 2 14 14 C 1.50239 * 106.40817 * 182.72921 * 11 9 8 15 15 H 1.09002 * 114.87960 * 210.47063 * 14 11 9 16 16 C 1.56839 * 102.22609 * 85.48316 * 14 11 9 17 17 C 1.54010 * 106.11366 * 325.09369 * 16 14 11 18 18 C 1.51607 * 122.77975 * 202.98883 * 9 8 7 19 19 H 1.09003 * 113.34881 * 319.68647 * 18 9 8 20 20 C 1.56557 * 102.45450 * 195.83337 * 18 9 8 21 21 N 1.48568 * 104.60176 * 322.12001 * 20 18 9 22 22 C 1.36935 * 122.46730 * 145.11119 * 21 20 18 23 23 H 1.07994 * 120.00079 * 330.77765 * 22 21 20 24 24 C 1.38816 * 119.99649 * 150.78834 * 22 21 20 25 25 N 1.31620 * 119.99765 * 158.30261 * 24 22 21 26 26 Si 1.86799 * 119.99867 * 338.30080 * 24 22 21 27 27 H 1.48495 * 109.47104 * 95.39866 * 26 24 22 28 28 H 1.48501 * 109.46770 * 215.39693 * 26 24 22 29 29 H 1.48496 * 109.47059 * 335.39538 * 26 24 22 30 30 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47492 * 59.99382 * 1 2 3 32 32 H 1.09009 * 109.46833 * 299.99552 * 1 2 3 33 33 H 1.08995 * 109.47177 * 49.41100 * 3 2 1 34 34 H 1.08998 * 109.47285 * 169.41140 * 3 2 1 35 35 H 1.08998 * 109.47389 * 289.41189 * 3 2 1 36 36 H 1.09000 * 109.47206 * 70.08747 * 4 2 1 37 37 H 1.08999 * 109.47599 * 190.08914 * 4 2 1 38 38 H 1.09005 * 109.46995 * 310.09118 * 4 2 1 39 39 H 1.08998 * 110.76871 * 323.07487 * 8 7 5 40 40 H 1.08997 * 110.77496 * 86.30173 * 8 7 5 41 41 H 1.09000 * 110.40591 * 304.14409 * 13 7 5 42 42 H 1.09000 * 110.40634 * 66.56868 * 13 7 5 43 43 H 1.09008 * 110.11424 * 205.94676 * 16 14 11 44 44 H 1.08991 * 110.11885 * 84.24826 * 16 14 11 45 45 H 1.09002 * 109.46096 * 203.29806 * 17 16 14 46 46 H 1.09004 * 109.44671 * 83.33407 * 17 16 14 47 47 H 1.09004 * 110.40604 * 80.88414 * 20 18 9 48 48 H 1.09000 * 110.40616 * 203.34792 * 20 18 9 49 49 H 0.97003 * 119.99253 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 2.0323 -0.7103 -1.2305 6 8 1.2448 -1.1373 -2.0482 7 7 3.3566 -0.8712 -1.4225 8 6 3.9961 -1.6266 -2.5446 9 6 5.3377 -2.0182 -1.9590 10 1 5.1990 -2.7939 -1.2058 11 6 5.7081 -0.6692 -1.2680 12 1 5.8084 0.0557 -2.0759 13 6 4.4414 -0.3209 -0.5556 14 6 7.0761 -0.8571 -0.6760 15 1 7.2689 -0.2768 0.2263 16 6 8.0119 -0.5186 -1.8882 17 6 7.2833 -1.0276 -3.1460 18 6 6.5436 -2.3464 -2.8172 19 1 6.2975 -2.9343 -3.7015 20 6 7.4935 -3.0677 -1.8031 21 7 7.3109 -2.3279 -0.5277 22 6 7.3547 -2.9461 0.6934 23 1 7.0575 -3.9802 0.7861 24 6 7.7811 -2.2434 1.8121 25 7 7.4378 -2.6511 3.0155 26 14 8.8418 -0.7192 1.6094 27 1 7.9798 0.4897 1.6271 28 1 9.8206 -0.6457 2.7237 29 1 9.5684 -0.7903 0.3162 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 0.5138 0.8901 33 1 1.5307 2.0079 0.7804 34 1 3.1135 1.4484 0.1888 35 1 1.8391 1.8989 -0.9692 36 1 1.8313 -1.7877 1.1637 37 1 3.1151 -0.5680 1.3437 38 1 1.5373 -0.3220 2.1300 39 1 3.4117 -2.5112 -2.7977 40 1 4.1241 -0.9869 -3.4178 41 1 4.3409 0.7603 -0.4614 42 1 4.4188 -0.7925 0.4269 43 1 8.9688 -1.0288 -1.7770 44 1 8.1654 0.5585 -1.9539 45 1 8.0094 -1.2063 -3.9390 46 1 6.5624 -0.2793 -3.4755 47 1 7.1996 -4.1105 -1.6829 48 1 8.5287 -2.9992 -2.1374 49 1 7.7361 -2.1602 3.7972 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087405357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:52:38 Heat of formation + Delta-G solvation = 19.597258 kcal Electronic energy + Delta-G solvation = -28152.181922 eV Core-core repulsion = 24694.745327 eV Total energy + Delta-G solvation = -3457.436595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.67505 -40.85405 -37.46586 -36.69957 -35.01266 -32.67941 -32.57727 -31.46646 -29.24442 -28.34900 -27.89548 -27.10104 -25.90463 -23.39330 -23.23296 -22.35649 -21.84506 -19.94051 -19.26209 -18.41290 -17.74992 -17.48726 -17.27893 -16.26901 -16.20633 -15.86558 -15.59987 -15.27445 -15.08015 -14.81124 -14.60483 -14.18725 -13.91533 -13.75592 -13.56788 -13.42206 -13.26988 -13.16535 -12.82939 -12.79093 -12.73330 -12.64263 -12.51176 -12.31249 -12.26653 -12.06037 -11.94177 -11.85937 -11.67510 -11.62417 -11.35792 -10.84282 -10.74183 -10.50325 -10.42238 -9.67513 -8.81140 -8.11770 -5.41236 1.30061 1.46322 1.55935 1.57583 1.86893 2.46613 2.99257 3.19185 3.29571 3.48546 3.65187 3.77357 3.84966 3.88455 4.05130 4.11629 4.19539 4.23151 4.32687 4.39836 4.46556 4.52296 4.53960 4.65387 4.67616 4.72180 4.75941 4.78548 4.83153 4.89023 4.90020 4.93071 4.96210 5.03300 5.07609 5.11559 5.16955 5.19988 5.21759 5.28895 5.32693 5.42031 5.42478 5.55790 5.61639 5.87387 6.19149 6.47534 6.89837 7.08771 7.62693 8.15259 9.09007 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.006076 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.317926 B = 4607.191907 C = 5543.515676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.144 4.144 4 C -0.146 4.146 5 C 0.531 3.469 6 O -0.588 6.588 7 N -0.618 5.618 8 C 0.124 3.876 9 C -0.084 4.084 10 H 0.053 0.947 11 C -0.137 4.137 12 H 0.097 0.903 13 C 0.114 3.886 14 C 0.156 3.844 15 H 0.068 0.932 16 C -0.134 4.134 17 C -0.104 4.104 18 C -0.077 4.077 19 H 0.115 0.885 20 C 0.141 3.859 21 N -0.618 5.618 22 C -0.236 4.236 23 H 0.037 0.963 24 C -0.032 4.032 25 N -0.959 5.959 26 Si 0.938 3.062 27 H -0.271 1.271 28 H -0.322 1.322 29 H -0.245 1.245 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.038 0.962 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.039 0.961 48 H 0.041 0.959 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 10.451 -11.278 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.084 4.084 3 C -0.201 4.201 4 C -0.203 4.203 5 C 0.321 3.679 6 O -0.469 6.469 7 N -0.351 5.351 8 C 0.003 3.997 9 C -0.103 4.103 10 H 0.071 0.929 11 C -0.157 4.157 12 H 0.115 0.885 13 C -0.007 4.007 14 C 0.051 3.949 15 H 0.085 0.915 16 C -0.173 4.173 17 C -0.141 4.141 18 C -0.096 4.096 19 H 0.133 0.867 20 C 0.017 3.983 21 N -0.344 5.344 22 C -0.366 4.366 23 H 0.055 0.945 24 C -0.226 4.226 25 N -0.605 5.605 26 Si 0.768 3.232 27 H -0.198 1.198 28 H -0.252 1.252 29 H -0.169 1.169 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.345 10.216 -11.551 16.675 hybrid contribution 0.584 -0.172 0.967 1.142 sum -5.762 10.044 -10.584 15.688 Atomic orbital electron populations 1.21636 0.91276 1.02000 1.02864 1.20811 0.98232 0.97388 0.91944 1.22041 1.02369 0.92281 1.03400 1.22015 1.02189 0.99393 0.96725 1.20884 0.80326 0.78940 0.87702 1.90627 1.55383 1.53009 1.47854 1.49772 1.04909 1.52705 1.27729 1.21744 0.92729 0.95757 0.89470 1.21685 0.92909 0.97549 0.98192 0.92851 1.22105 0.94174 0.99167 1.00251 0.88503 1.21611 0.85988 0.99252 0.93871 1.21616 0.92639 0.84506 0.96117 0.91458 1.23154 0.98352 1.01213 0.94545 1.22105 0.99269 0.96194 0.96544 1.22185 0.92548 0.97757 0.97119 0.86683 1.22224 0.96885 0.94249 0.84947 1.45779 1.83494 1.03723 1.01405 1.18653 1.36155 0.96685 0.85103 0.94524 1.25847 1.00461 1.01833 0.94479 1.70004 1.48075 1.43916 0.98518 0.86003 0.79712 0.80215 0.77262 1.19808 1.25187 1.16887 0.93710 0.92472 0.89394 0.89150 0.91180 0.92178 0.94288 0.91938 0.89246 0.91962 0.89480 0.88241 0.92584 0.92281 0.90044 0.89866 0.90154 0.94231 0.94121 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 7.72 71.98 0.56 -2.21 16 2 C -0.08 -2.06 0.75 -52.93 -0.04 -2.10 16 3 C -0.14 -2.87 8.14 71.98 0.59 -2.28 16 4 C -0.15 -3.90 8.16 71.98 0.59 -3.31 16 5 C 0.53 17.22 6.55 87.66 0.57 17.80 16 6 O -0.59 -22.70 16.33 -3.06 -0.05 -22.75 16 7 N -0.62 -19.11 3.41 -815.32 -2.78 -21.89 16 8 C 0.12 3.59 6.69 85.29 0.57 4.16 16 9 C -0.08 -2.58 2.31 -10.68 -0.02 -2.61 16 10 H 0.05 2.16 7.09 -2.39 -0.02 2.15 16 11 C -0.14 -4.18 2.21 -11.77 -0.03 -4.20 16 12 H 0.10 2.42 5.11 -2.38 -0.01 2.41 16 13 C 0.11 3.43 5.09 84.69 0.43 3.87 16 14 C 0.16 5.72 3.10 44.83 0.14 5.86 16 15 H 0.07 2.78 3.45 -2.39 -0.01 2.77 16 16 C -0.13 -3.83 5.01 32.28 0.16 -3.67 16 17 C -0.10 -2.30 5.30 31.53 0.17 -2.13 16 18 C -0.08 -2.00 4.31 -9.42 -0.04 -2.04 16 19 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 20 C 0.14 4.92 5.74 87.22 0.50 5.43 16 21 N -0.62 -26.65 1.63 -655.55 -1.07 -27.72 16 22 C -0.24 -12.95 10.29 84.03 0.86 -12.08 16 23 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 24 C -0.03 -1.78 5.39 84.86 0.46 -1.32 16 25 N -0.96 -59.22 13.97 21.65 0.30 -58.92 16 26 Si 0.94 43.90 24.64 68.60 1.69 45.59 16 27 H -0.27 -11.74 6.58 99.48 0.65 -11.09 16 28 H -0.32 -15.85 7.11 99.48 0.71 -15.14 16 29 H -0.25 -10.58 6.00 99.48 0.60 -9.99 16 30 H 0.04 1.16 8.12 -2.39 -0.02 1.14 16 31 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 32 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.09 1.40 8.11 -2.39 -0.02 1.38 16 34 H 0.07 1.41 4.79 -2.39 -0.01 1.40 16 35 H 0.06 1.17 8.10 -2.39 -0.02 1.16 16 36 H 0.04 1.17 8.11 -2.39 -0.02 1.15 16 37 H 0.06 1.84 4.83 -2.39 -0.01 1.82 16 38 H 0.09 1.93 8.11 -2.38 -0.02 1.91 16 39 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 40 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.10 2.47 5.48 -2.39 -0.01 2.45 16 42 H 0.06 2.03 5.84 -2.39 -0.01 2.01 16 43 H 0.06 1.89 6.54 -2.38 -0.02 1.88 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.08 1.51 6.49 -2.39 -0.02 1.49 16 47 H 0.04 1.47 8.12 -2.38 -0.02 1.45 16 48 H 0.04 1.36 7.15 -2.39 -0.02 1.34 16 49 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -69.81 345.14 4.34 -65.47 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.78 Total: 21.08 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.47 Total: -0.86 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -3.54 Total: -108.53 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.69 Total: 45.59 kcal Total: -69.81 4.34 -65.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087405357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.065 kcal (2) G-P(sol) polarization free energy of solvation -69.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds