Wall clock time and date at job start Fri Apr 10 2020 21:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47729 * 2 1 4 4 H 1.08995 * 109.99811 * 305.18230 * 3 2 1 5 5 C 1.54330 * 109.99419 * 184.13739 * 3 2 1 6 6 H 1.09000 * 110.67222 * 337.05499 * 5 3 2 7 7 N 1.46509 * 110.84603 * 100.19800 * 5 3 2 8 8 C 1.34779 * 119.99789 * 200.14453 * 7 5 3 9 9 O 1.21284 * 119.99886 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00119 * 180.02562 * 8 7 5 11 11 H 1.09006 * 110.05013 * 23.18206 * 10 8 7 12 12 C 1.54380 * 110.07027 * 144.66910 * 10 8 7 13 13 C 1.54927 * 104.22144 * 142.78458 * 12 10 8 14 14 C 1.54983 * 102.81978 * 322.27958 * 13 12 10 15 15 C 1.53476 * 110.07440 * 261.64277 * 10 8 7 16 16 C 1.52575 * 121.05354 * 96.56210 * 15 10 8 17 17 C 1.52561 * 121.08794 * 24.85185 * 15 10 8 18 18 C 1.55154 * 103.02440 * 218.66648 * 5 3 2 19 19 C 1.54914 * 101.57875 * 35.30837 * 18 5 3 20 20 N 1.47029 * 109.87922 * 66.27322 * 3 2 1 21 21 C 1.36928 * 125.64822 * 298.39728 * 20 3 2 22 22 H 1.08004 * 120.00235 * 341.77726 * 21 20 3 23 23 C 1.38812 * 120.00184 * 161.50672 * 21 20 3 24 24 N 1.31618 * 120.00008 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00007 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46898 * 90.00228 * 25 23 21 27 27 H 1.48502 * 109.47009 * 209.99955 * 25 23 21 28 28 H 1.48490 * 109.47615 * 330.00098 * 25 23 21 29 29 H 1.09008 * 109.47024 * 292.13292 * 1 2 3 30 30 H 1.09000 * 109.46863 * 52.12237 * 1 2 3 31 31 H 1.08997 * 109.47418 * 172.12674 * 1 2 3 32 32 H 1.09008 * 109.47047 * 240.00182 * 2 1 3 33 33 H 1.09007 * 109.47331 * 120.00297 * 2 1 3 34 34 H 0.96991 * 120.00197 * 20.15032 * 7 5 3 35 35 H 1.09002 * 110.48308 * 261.46668 * 12 10 8 36 36 H 1.09000 * 110.48424 * 23.96859 * 12 10 8 37 37 H 1.09000 * 110.74429 * 80.61700 * 13 12 10 38 38 H 1.09000 * 110.74054 * 203.76380 * 13 12 10 39 39 H 1.09004 * 110.50691 * 156.21769 * 14 13 12 40 40 H 1.08999 * 110.51302 * 278.79072 * 14 13 12 41 41 H 1.09001 * 117.50831 * 356.97513 * 16 15 10 42 42 H 1.09002 * 117.51122 * 142.06137 * 16 15 10 43 43 H 1.08996 * 117.51020 * 217.88402 * 17 15 10 44 44 H 1.09004 * 117.50562 * 2.96878 * 17 15 10 45 45 H 1.08996 * 111.00436 * 277.23617 * 18 5 3 46 46 H 1.09000 * 111.00652 * 153.38255 * 18 5 3 47 47 H 1.08998 * 110.36248 * 204.15302 * 19 18 5 48 48 H 1.08994 * 110.45695 * 81.88043 * 19 18 5 49 49 H 0.96991 * 120.00242 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6080 1.9906 -0.8371 5 6 3.5798 1.4576 -0.1046 6 1 3.9984 0.5130 0.2426 7 7 4.0063 1.7375 -1.4780 8 6 5.2492 1.4043 -1.8788 9 8 6.0144 0.8723 -1.1026 10 6 5.6882 1.6926 -3.2913 11 1 5.0873 2.4989 -3.7121 12 6 7.1827 2.0787 -3.3132 13 6 7.7231 1.4347 -4.6146 14 6 6.9608 0.0866 -4.6734 15 6 5.5541 0.4296 -4.1528 16 6 4.3215 0.1965 -5.0214 17 6 4.5661 -0.6733 -3.7856 18 6 3.9832 2.6182 0.8428 19 6 2.9214 2.4883 1.9633 20 7 1.6823 2.0993 1.2658 21 6 0.4091 2.3096 1.7237 22 1 -0.4256 2.2608 1.0401 23 6 0.1906 2.5799 3.0676 24 7 1.2073 2.6347 3.9017 25 14 -1.5462 2.8675 3.6921 26 1 -2.1421 1.5734 4.1113 27 1 -1.5081 3.7937 4.8523 28 1 -2.3692 3.4638 2.6096 29 1 -0.3633 0.3872 0.9520 30 1 -0.3633 0.6310 -0.8112 31 1 -0.3634 -1.0179 -0.1408 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.3942 2.1627 -2.0988 35 1 7.2964 3.1622 -3.3482 36 1 7.6950 1.6703 -2.4421 37 1 7.4824 2.0525 -5.4798 38 1 8.7985 1.2707 -4.5465 39 1 6.9099 -0.2788 -5.6991 40 1 7.4394 -0.6512 -4.0295 41 1 3.5208 0.9341 -4.9675 42 1 4.4735 -0.2626 -5.9983 43 1 4.8788 -1.7045 -3.9496 44 1 3.9262 -0.5078 -2.9188 45 1 3.9025 3.5808 0.3378 46 1 4.9882 2.4690 1.2376 47 1 2.7871 3.4433 2.4711 48 1 3.2130 1.7177 2.6769 49 1 1.0547 2.8232 4.8407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087622821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:53:56 Heat of formation + Delta-G solvation = -4.138493 kcal Electronic energy + Delta-G solvation = -26653.806654 eV Core-core repulsion = 23195.340799 eV Total energy + Delta-G solvation = -3458.465855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.48076 -38.58015 -37.31248 -34.40084 -33.89326 -32.47814 -31.82599 -29.68921 -28.49421 -26.77003 -25.88147 -24.43011 -22.64127 -22.09316 -21.39453 -20.60146 -20.08780 -19.62743 -18.59822 -16.96792 -16.79650 -15.93677 -15.90114 -15.22292 -14.67246 -14.54099 -14.15831 -14.10532 -13.71124 -13.43689 -12.95180 -12.87360 -12.63246 -12.50506 -12.19426 -11.98877 -11.69426 -11.61042 -11.46305 -11.24421 -11.04823 -10.97762 -10.89256 -10.83468 -10.75577 -10.58182 -10.39646 -10.30985 -10.21189 -10.09635 -9.98410 -9.80155 -9.41547 -9.31874 -8.60358 -8.52725 -6.76766 -5.77314 -3.12993 2.83099 3.28645 3.37485 3.43226 3.44559 3.72647 4.19931 4.43468 4.47049 4.67847 4.70776 4.91459 5.05886 5.09850 5.25996 5.32606 5.38976 5.43964 5.49428 5.52864 5.59054 5.61503 5.66566 5.72510 5.82847 5.83458 5.88469 5.92962 5.99218 6.01944 6.03381 6.04335 6.19777 6.23183 6.31363 6.48578 6.51181 6.58884 6.66469 6.74235 6.87873 7.17752 7.25640 7.48461 7.63810 7.77103 7.79772 8.26152 8.49415 9.16970 9.78119 10.48518 11.35458 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.003514 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.104620 B = 7966.459322 C = 8635.632797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.160 3.840 4 H 0.034 0.966 5 C 0.136 3.864 6 H 0.090 0.910 7 N -0.717 5.717 8 C 0.521 3.479 9 O -0.539 6.539 10 C -0.077 4.077 11 H 0.088 0.912 12 C -0.111 4.111 13 C -0.119 4.119 14 C -0.086 4.086 15 C -0.117 4.117 16 C -0.166 4.166 17 C -0.169 4.169 18 C -0.154 4.154 19 C 0.176 3.824 20 N -0.591 5.591 21 C -0.226 4.226 22 H 0.079 0.921 23 C -0.002 4.002 24 N -0.913 5.913 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.088 0.912 30 H 0.039 0.961 31 H 0.030 0.970 32 H 0.038 0.962 33 H 0.058 0.942 34 H 0.396 0.604 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.031 0.969 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.875 -2.724 -18.118 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.052 3.948 4 H 0.051 0.949 5 C 0.031 3.969 6 H 0.108 0.892 7 N -0.367 5.367 8 C 0.307 3.693 9 O -0.416 6.416 10 C -0.099 4.099 11 H 0.107 0.893 12 C -0.149 4.149 13 C -0.157 4.157 14 C -0.123 4.123 15 C -0.117 4.117 16 C -0.203 4.203 17 C -0.206 4.206 18 C -0.194 4.194 19 C 0.050 3.950 20 N -0.316 5.316 21 C -0.354 4.354 22 H 0.096 0.904 23 C -0.200 4.200 24 N -0.559 5.559 25 Si 0.735 3.265 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.107 0.893 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.229 0.771 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.049 0.951 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.318 -3.035 -17.317 19.897 hybrid contribution -1.364 0.291 0.156 1.403 sum 7.954 -2.745 -17.161 19.113 Atomic orbital electron populations 1.21936 0.95979 0.99097 1.03853 1.21925 0.96723 0.97967 0.99801 1.21096 0.90131 0.92201 0.91384 0.94890 1.22073 0.95356 0.99225 0.80231 0.89223 1.46187 1.14385 1.62129 1.13986 1.20381 0.81740 0.78059 0.89135 1.90668 1.52882 1.42728 1.55287 1.21421 0.99009 0.97232 0.92201 0.89325 1.22352 0.92763 1.00514 0.99283 1.22438 0.99555 0.96174 0.97516 1.21859 0.92412 0.97698 1.00352 1.21500 0.92224 0.96526 1.01459 1.23045 0.98566 1.03219 0.95439 1.23016 1.02123 0.96075 0.99342 1.23383 1.00076 0.97190 0.98739 1.21368 0.82782 1.00098 0.90704 1.44396 1.02429 1.66003 1.18760 1.18947 0.83049 1.42018 0.91432 0.90385 1.24975 0.97213 1.01902 0.95866 1.69925 1.28538 1.54124 1.03298 0.86236 0.84154 0.77657 0.78453 1.21451 1.21691 1.20585 0.89304 0.94212 0.95049 0.94316 0.92305 0.77052 0.91288 0.89539 0.91432 0.91233 0.91580 0.90909 0.88626 0.88610 0.88631 0.88336 0.92172 0.91960 0.91579 0.95127 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.91 37.16 0.33 -2.49 16 2 C -0.12 -2.34 5.46 -26.73 -0.15 -2.48 16 3 C 0.16 3.15 3.00 -66.95 -0.20 2.95 16 4 H 0.03 0.64 7.69 -51.93 -0.40 0.24 16 5 C 0.14 2.46 2.76 -66.09 -0.18 2.28 16 6 H 0.09 1.79 7.40 -51.93 -0.38 1.40 16 7 N -0.72 -10.46 5.06 -52.02 -0.26 -10.72 16 8 C 0.52 7.71 5.51 -10.99 -0.06 7.65 16 9 O -0.54 -10.07 15.57 5.55 0.09 -9.98 16 10 C -0.08 -0.86 3.16 -90.80 -0.29 -1.15 16 11 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 12 C -0.11 -1.17 6.33 -24.99 -0.16 -1.33 16 13 C -0.12 -1.01 6.91 -24.67 -0.17 -1.18 16 14 C -0.09 -0.78 6.58 -25.23 -0.17 -0.95 16 15 C -0.12 -1.19 2.26 -154.25 -0.35 -1.54 16 16 C -0.17 -1.46 10.23 -26.90 -0.28 -1.74 16 17 C -0.17 -1.83 9.63 -26.91 -0.26 -2.09 16 18 C -0.15 -3.03 6.77 -24.58 -0.17 -3.20 16 19 C 0.18 4.21 5.37 -2.53 -0.01 4.20 16 20 N -0.59 -14.27 3.12 -162.57 -0.51 -14.78 16 21 C -0.23 -5.92 7.80 -15.06 -0.12 -6.04 16 22 H 0.08 1.98 6.60 -52.48 -0.35 1.63 16 23 C 0.00 -0.06 5.46 -17.43 -0.10 -0.15 16 24 N -0.91 -26.20 10.72 55.49 0.59 -25.61 16 25 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H 0.09 1.92 5.38 -51.92 -0.28 1.64 16 30 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.40 4.87 8.29 -40.82 -0.34 4.54 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.10 6.97 -51.93 -0.36 0.74 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.10 1.24 7.18 -51.93 -0.37 0.87 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.07 1.75 7.19 -51.93 -0.37 1.38 16 48 H 0.03 0.81 7.97 -51.93 -0.41 0.39 16 49 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -29.94 376.52 -10.50 -40.43 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.74 Total: 5.80 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.32 Total: -7.26 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.18 Total: -51.11 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.94 -10.50 -40.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087622821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.293 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds