Wall clock time and date at job start Fri Apr 10 2020 21:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47729 * 2 1 4 4 H 1.08995 * 109.99811 * 305.18230 * 3 2 1 5 5 C 1.54330 * 109.99419 * 184.13739 * 3 2 1 6 6 H 1.09000 * 110.67222 * 337.05499 * 5 3 2 7 7 N 1.46509 * 110.84603 * 100.19800 * 5 3 2 8 8 C 1.34779 * 119.99789 * 200.14453 * 7 5 3 9 9 O 1.21284 * 119.99886 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00119 * 180.02562 * 8 7 5 11 11 H 1.09006 * 110.05013 * 23.18206 * 10 8 7 12 12 C 1.54380 * 110.07027 * 144.66910 * 10 8 7 13 13 C 1.54927 * 104.22144 * 142.78458 * 12 10 8 14 14 C 1.54983 * 102.81978 * 322.27958 * 13 12 10 15 15 C 1.53476 * 110.07440 * 261.64277 * 10 8 7 16 16 C 1.52575 * 121.05354 * 96.56210 * 15 10 8 17 17 C 1.52561 * 121.08794 * 24.85185 * 15 10 8 18 18 C 1.55154 * 103.02440 * 218.66648 * 5 3 2 19 19 C 1.54914 * 101.57875 * 35.30837 * 18 5 3 20 20 N 1.47029 * 109.87922 * 66.27322 * 3 2 1 21 21 C 1.36928 * 125.64822 * 298.39728 * 20 3 2 22 22 H 1.08004 * 120.00235 * 341.77726 * 21 20 3 23 23 C 1.38812 * 120.00184 * 161.50672 * 21 20 3 24 24 N 1.31618 * 120.00008 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00007 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46898 * 90.00228 * 25 23 21 27 27 H 1.48502 * 109.47009 * 209.99955 * 25 23 21 28 28 H 1.48490 * 109.47615 * 330.00098 * 25 23 21 29 29 H 1.09008 * 109.47024 * 292.13292 * 1 2 3 30 30 H 1.09000 * 109.46863 * 52.12237 * 1 2 3 31 31 H 1.08997 * 109.47418 * 172.12674 * 1 2 3 32 32 H 1.09008 * 109.47047 * 240.00182 * 2 1 3 33 33 H 1.09007 * 109.47331 * 120.00297 * 2 1 3 34 34 H 0.96991 * 120.00197 * 20.15032 * 7 5 3 35 35 H 1.09002 * 110.48308 * 261.46668 * 12 10 8 36 36 H 1.09000 * 110.48424 * 23.96859 * 12 10 8 37 37 H 1.09000 * 110.74429 * 80.61700 * 13 12 10 38 38 H 1.09000 * 110.74054 * 203.76380 * 13 12 10 39 39 H 1.09004 * 110.50691 * 156.21769 * 14 13 12 40 40 H 1.08999 * 110.51302 * 278.79072 * 14 13 12 41 41 H 1.09001 * 117.50831 * 356.97513 * 16 15 10 42 42 H 1.09002 * 117.51122 * 142.06137 * 16 15 10 43 43 H 1.08996 * 117.51020 * 217.88402 * 17 15 10 44 44 H 1.09004 * 117.50562 * 2.96878 * 17 15 10 45 45 H 1.08996 * 111.00436 * 277.23617 * 18 5 3 46 46 H 1.09000 * 111.00652 * 153.38255 * 18 5 3 47 47 H 1.08998 * 110.36248 * 204.15302 * 19 18 5 48 48 H 1.08994 * 110.45695 * 81.88043 * 19 18 5 49 49 H 0.96991 * 120.00242 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6080 1.9906 -0.8371 5 6 3.5798 1.4576 -0.1046 6 1 3.9984 0.5130 0.2426 7 7 4.0063 1.7375 -1.4780 8 6 5.2492 1.4043 -1.8788 9 8 6.0144 0.8723 -1.1026 10 6 5.6882 1.6926 -3.2913 11 1 5.0873 2.4989 -3.7121 12 6 7.1827 2.0787 -3.3132 13 6 7.7231 1.4347 -4.6146 14 6 6.9608 0.0866 -4.6734 15 6 5.5541 0.4296 -4.1528 16 6 4.3215 0.1965 -5.0214 17 6 4.5661 -0.6733 -3.7856 18 6 3.9832 2.6182 0.8428 19 6 2.9214 2.4883 1.9633 20 7 1.6823 2.0993 1.2658 21 6 0.4091 2.3096 1.7237 22 1 -0.4256 2.2608 1.0401 23 6 0.1906 2.5799 3.0676 24 7 1.2073 2.6347 3.9017 25 14 -1.5462 2.8675 3.6921 26 1 -2.1421 1.5734 4.1113 27 1 -1.5081 3.7937 4.8523 28 1 -2.3692 3.4638 2.6096 29 1 -0.3633 0.3872 0.9520 30 1 -0.3633 0.6310 -0.8112 31 1 -0.3634 -1.0179 -0.1408 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.3942 2.1627 -2.0988 35 1 7.2964 3.1622 -3.3482 36 1 7.6950 1.6703 -2.4421 37 1 7.4824 2.0525 -5.4798 38 1 8.7985 1.2707 -4.5465 39 1 6.9099 -0.2788 -5.6991 40 1 7.4394 -0.6512 -4.0295 41 1 3.5208 0.9341 -4.9675 42 1 4.4735 -0.2626 -5.9983 43 1 4.8788 -1.7045 -3.9496 44 1 3.9262 -0.5078 -2.9188 45 1 3.9025 3.5808 0.3378 46 1 4.9882 2.4690 1.2376 47 1 2.7871 3.4433 2.4711 48 1 3.2130 1.7177 2.6769 49 1 1.0547 2.8232 4.8407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087622821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:53:55 Heat of formation + Delta-G solvation = -20.834662 kcal Electronic energy + Delta-G solvation = -26654.530654 eV Core-core repulsion = 23195.340799 eV Total energy + Delta-G solvation = -3459.189855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.56522 -39.94003 -38.62381 -35.65606 -34.95285 -34.19568 -33.54588 -31.01347 -29.95693 -28.32578 -26.84099 -26.15712 -23.69382 -23.34500 -22.72482 -21.65106 -21.54367 -21.10462 -19.67039 -18.78701 -18.02574 -17.37683 -16.74938 -16.59111 -16.07628 -15.81751 -15.60743 -15.51967 -15.06318 -14.57935 -14.42484 -14.17465 -13.97898 -13.74071 -13.59129 -13.41546 -13.19948 -12.85635 -12.76378 -12.60867 -12.50080 -12.37365 -12.27950 -12.03508 -11.99206 -11.93283 -11.78904 -11.70727 -11.50725 -11.49643 -11.24563 -11.13248 -11.04359 -10.58736 -10.37168 -9.99446 -8.77184 -7.83762 -5.20715 1.47807 1.48694 1.56839 1.66251 2.12800 2.52642 2.88243 3.36792 3.42044 3.57658 3.66134 3.85212 3.88678 3.89694 3.93699 4.11388 4.19918 4.30640 4.36483 4.40521 4.47370 4.50196 4.62474 4.64778 4.70366 4.80798 4.81224 4.82899 4.95450 4.97353 5.01833 5.04295 5.07694 5.11876 5.18596 5.20130 5.21478 5.26659 5.30617 5.38817 5.47572 5.49948 5.59817 5.66234 5.69996 5.72287 6.25941 6.61674 7.10967 7.31534 7.78744 8.47958 9.28907 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.003514 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.104620 B = 7966.459322 C = 8635.632797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.160 3.840 4 H 0.054 0.946 5 C 0.153 3.847 6 H 0.069 0.931 7 N -0.705 5.705 8 C 0.521 3.479 9 O -0.582 6.582 10 C -0.072 4.072 11 H 0.115 0.885 12 C -0.115 4.115 13 C -0.111 4.111 14 C -0.087 4.087 15 C -0.125 4.125 16 C -0.140 4.140 17 C -0.190 4.190 18 C -0.139 4.139 19 C 0.185 3.815 20 N -0.607 5.607 21 C -0.219 4.219 22 H 0.089 0.911 23 C -0.063 4.063 24 N -0.950 5.950 25 Si 0.967 3.033 26 H -0.288 1.288 27 H -0.300 1.300 28 H -0.265 1.265 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.411 0.589 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.034 0.966 48 H -0.006 1.006 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.250 -2.431 -22.119 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C 0.053 3.947 4 H 0.071 0.929 5 C 0.047 3.953 6 H 0.088 0.912 7 N -0.356 5.356 8 C 0.309 3.691 9 O -0.462 6.462 10 C -0.094 4.094 11 H 0.133 0.867 12 C -0.153 4.153 13 C -0.149 4.149 14 C -0.124 4.124 15 C -0.125 4.125 16 C -0.177 4.177 17 C -0.227 4.227 18 C -0.179 4.179 19 C 0.059 3.941 20 N -0.332 5.332 21 C -0.348 4.348 22 H 0.107 0.893 23 C -0.257 4.257 24 N -0.599 5.599 25 Si 0.795 3.205 26 H -0.216 1.216 27 H -0.227 1.227 28 H -0.189 1.189 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.248 0.752 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.052 0.948 48 H 0.012 0.988 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.672 -2.741 -21.388 23.241 hybrid contribution -1.128 0.146 1.360 1.773 sum 7.544 -2.595 -20.027 21.558 Atomic orbital electron populations 1.21834 0.95414 1.00630 1.02443 1.21845 0.97132 0.97091 0.99857 1.21246 0.91090 0.92643 0.89729 0.92889 1.21618 0.94229 0.97494 0.81978 0.91245 1.45990 1.14917 1.62163 1.12555 1.21113 0.80911 0.76675 0.90365 1.90659 1.54033 1.44563 1.56895 1.21505 0.99689 0.98696 0.89474 0.86713 1.22376 0.92142 1.01432 0.99352 1.22435 0.99829 0.95724 0.96887 1.21883 0.91711 0.97789 1.01043 1.21594 0.93297 0.95700 1.01941 1.23146 0.97410 1.01961 0.95167 1.22993 1.02916 0.96657 1.00181 1.23185 0.98440 0.98585 0.97642 1.21054 0.84431 0.97162 0.91473 1.44627 1.01901 1.66734 1.19972 1.19315 0.84100 1.39835 0.91553 0.89297 1.25728 1.00491 1.03051 0.96405 1.70132 1.30369 1.56350 1.02999 0.85251 0.80335 0.77095 0.77775 1.21562 1.22673 1.18904 0.92699 0.92646 0.92887 0.91386 0.95054 0.75175 0.89902 0.92534 0.89387 0.90577 0.89580 0.92616 0.87527 0.86755 0.88598 0.90376 0.90843 0.92057 0.94757 0.98760 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 8.91 71.98 0.64 -4.51 16 2 C -0.12 -4.37 5.46 30.59 0.17 -4.20 16 3 C 0.16 6.12 3.00 45.34 0.14 6.26 16 4 H 0.05 1.88 7.69 -2.39 -0.02 1.86 16 5 C 0.15 5.48 2.76 46.18 0.13 5.61 16 6 H 0.07 2.82 7.40 -2.39 -0.02 2.80 16 7 N -0.71 -19.31 5.06 -436.89 -2.21 -21.52 16 8 C 0.52 14.80 5.51 87.66 0.48 15.29 16 9 O -0.58 -21.96 15.57 -3.04 -0.05 -22.00 16 10 C -0.07 -1.43 3.16 -10.91 -0.03 -1.47 16 11 H 0.11 1.68 8.11 -2.38 -0.02 1.66 16 12 C -0.12 -2.20 6.33 31.72 0.20 -2.00 16 13 C -0.11 -1.55 6.91 31.93 0.22 -1.33 16 14 C -0.09 -1.36 6.58 31.57 0.21 -1.16 16 15 C -0.12 -2.21 2.26 -52.02 -0.12 -2.32 16 16 C -0.14 -1.92 10.23 30.48 0.31 -1.60 16 17 C -0.19 -3.76 9.63 30.48 0.29 -3.47 16 18 C -0.14 -5.53 6.77 31.99 0.22 -5.31 16 19 C 0.18 9.25 5.37 86.86 0.47 9.72 16 20 N -0.61 -29.71 3.12 -668.25 -2.09 -31.79 16 21 C -0.22 -11.53 7.80 84.03 0.66 -10.87 16 22 H 0.09 4.42 6.60 -2.91 -0.02 4.40 16 23 C -0.06 -3.52 5.46 84.86 0.46 -3.06 16 24 N -0.95 -57.00 10.72 21.65 0.23 -56.76 16 25 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 29 H 0.05 2.32 5.38 -2.38 -0.01 2.31 16 30 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.41 8.81 8.29 -92.72 -0.77 8.04 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.43 6.97 -2.39 -0.02 1.42 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.01 8.11 -2.38 -0.02 0.99 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.08 1.86 7.18 -2.38 -0.02 1.84 16 45 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 46 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.03 1.91 7.19 -2.39 -0.02 1.89 16 48 H -0.01 -0.32 7.97 -2.39 -0.02 -0.34 16 49 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -68.20 376.52 2.51 -65.70 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.15 Total: 23.92 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 4.44 Total: -4.42 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -4.06 Total: -110.08 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -68.20 2.51 -65.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087622821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.864 kcal (2) G-P(sol) polarization free energy of solvation -68.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds