Wall clock time and date at job start Fri Apr 10 2020 21:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46914 * 2 1 4 4 H 1.08995 * 110.00009 * 305.90030 * 3 2 1 5 5 C 1.54323 * 109.88175 * 184.79971 * 3 2 1 6 6 H 1.08999 * 110.72075 * 336.93598 * 5 3 2 7 7 N 1.46503 * 110.71789 * 100.02760 * 5 3 2 8 8 C 1.34772 * 120.00048 * 204.99656 * 7 5 3 9 9 O 1.21279 * 120.00033 * 0.02562 * 8 7 5 10 10 C 1.50702 * 120.00106 * 180.02562 * 8 7 5 11 11 C 1.53008 * 110.67280 * 59.30194 * 10 8 7 12 12 C 1.54896 * 110.91525 * 295.96005 * 10 8 7 13 13 C 1.54272 * 104.19298 * 279.55254 * 12 10 8 14 14 H 1.08999 * 117.75676 * 116.74785 * 13 12 10 15 15 C 1.53000 * 118.19698 * 272.21105 * 13 12 10 16 16 C 1.52999 * 60.38077 * 93.61504 * 15 13 12 17 17 H 1.08994 * 119.75385 * 111.11517 * 16 15 13 18 18 C 1.54261 * 118.19976 * 266.38455 * 16 15 13 19 19 C 1.55158 * 102.94626 * 218.39204 * 5 3 2 20 20 C 1.54911 * 101.57719 * 35.50289 * 19 5 3 21 21 N 1.47025 * 109.88031 * 66.99567 * 3 2 1 22 22 C 1.36932 * 125.65171 * 298.31957 * 21 3 2 23 23 H 1.08007 * 119.99646 * 336.95146 * 22 21 3 24 24 C 1.38807 * 120.00259 * 156.94237 * 22 21 3 25 25 N 1.31624 * 119.99840 * 158.19029 * 24 22 21 26 26 Si 1.86804 * 120.00027 * 338.18926 * 24 22 21 27 27 H 1.48502 * 109.46909 * 92.18420 * 26 24 22 28 28 H 1.48498 * 109.46858 * 212.18233 * 26 24 22 29 29 H 1.48492 * 109.47025 * 332.18161 * 26 24 22 30 30 H 1.09005 * 109.47027 * 173.17440 * 1 2 3 31 31 H 1.09002 * 109.47104 * 293.17263 * 1 2 3 32 32 H 1.08999 * 109.47313 * 53.17499 * 1 2 3 33 33 H 1.09004 * 109.46820 * 240.00457 * 2 1 3 34 34 H 1.08998 * 109.47697 * 120.00585 * 2 1 3 35 35 H 0.97002 * 120.00217 * 25.00902 * 7 5 3 36 36 H 1.08999 * 109.47271 * 183.23427 * 11 10 8 37 37 H 1.08999 * 109.46873 * 63.23489 * 11 10 8 38 38 H 1.09001 * 109.46825 * 303.23983 * 11 10 8 39 39 H 1.09002 * 110.48388 * 38.22570 * 12 10 8 40 40 H 1.08997 * 110.48456 * 160.87551 * 12 10 8 41 41 H 1.09000 * 117.45870 * 346.01734 * 15 13 12 42 42 H 1.08998 * 117.45714 * 201.21382 * 15 13 12 43 43 H 1.08994 * 110.48546 * 329.10635 * 18 16 15 44 44 H 1.09001 * 110.59936 * 206.52219 * 18 16 15 45 45 H 1.08999 * 111.00431 * 153.57838 * 19 5 3 46 46 H 1.08998 * 111.00593 * 277.43088 * 19 5 3 47 47 H 1.09005 * 110.36385 * 204.15073 * 20 19 5 48 48 H 1.09007 * 110.46014 * 81.87911 * 20 19 5 49 49 H 0.97001 * 119.99423 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5980 1.9941 -0.8297 5 6 3.5783 1.4553 -0.1214 6 1 4.0000 0.5098 0.2195 7 7 3.9871 1.7357 -1.5001 8 6 5.1871 1.3145 -1.9461 9 8 5.9284 0.7028 -1.2063 10 6 5.6078 1.6034 -3.3640 11 6 5.6333 3.1112 -3.6233 12 6 4.6760 0.8885 -4.3739 13 6 5.2002 -0.5619 -4.4110 14 1 4.5313 -1.3523 -4.0707 15 6 6.3191 -0.9011 -5.3979 16 6 6.6709 -0.5094 -3.9613 17 1 7.0829 -1.2560 -3.2825 18 6 6.9890 0.9710 -3.6666 19 6 3.9917 2.6167 0.8207 20 6 2.9444 2.4851 1.9545 21 7 1.6971 2.0940 1.2727 22 6 0.4294 2.3035 1.7460 23 1 -0.4044 2.3361 1.0603 24 6 0.2160 2.4738 3.1069 25 7 -0.8700 3.0845 3.5314 26 14 1.4699 1.8363 4.3360 27 1 2.4430 2.9122 4.6536 28 1 0.7749 1.4149 5.5788 29 1 2.1886 0.6751 3.7528 30 1 -0.3633 -1.0204 -0.1221 31 1 -0.3633 0.4044 0.9448 32 1 -0.3634 0.6159 -0.8226 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.3942 2.2248 -2.0918 36 1 5.8836 3.2960 -4.6679 37 1 6.3815 3.5774 -2.9824 38 1 4.6528 3.5341 -3.4042 39 1 3.6440 0.9123 -4.0236 40 1 4.7563 1.3485 -5.3588 41 1 6.5334 -0.1764 -6.1833 42 1 6.4421 -1.9473 -5.6780 43 1 7.4428 1.4444 -4.5372 44 1 7.6458 1.0572 -2.8010 45 1 5.0018 2.4691 1.2028 46 1 3.9031 3.5791 0.3168 47 1 2.8148 3.4400 2.4640 48 1 3.2461 1.7150 2.6645 49 1 -1.0190 3.2038 4.4824 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087670168.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:54:33 Heat of formation + Delta-G solvation = 5.614849 kcal Electronic energy + Delta-G solvation = -26862.819130 eV Core-core repulsion = 23404.776212 eV Total energy + Delta-G solvation = -3458.042918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.87696 -38.94990 -37.61227 -34.31013 -33.59107 -32.53564 -31.97598 -29.36510 -28.44339 -27.27637 -27.08662 -24.57905 -22.90383 -22.15518 -21.60472 -20.58283 -20.01920 -19.91789 -18.83139 -17.08282 -16.87185 -16.25318 -15.81161 -15.08135 -14.96134 -14.72924 -14.23483 -13.66330 -13.52891 -13.47939 -13.08997 -13.04557 -12.86322 -12.69646 -12.49007 -12.44295 -12.18408 -11.95588 -11.78828 -11.51560 -11.40555 -11.09568 -11.00891 -10.90420 -10.88153 -10.66234 -10.39443 -10.31493 -10.24017 -10.06958 -9.97330 -9.81973 -9.47060 -9.30622 -8.77965 -8.60335 -7.03006 -5.97250 -3.29047 2.74900 3.24011 3.35903 3.42860 3.49169 3.52088 4.24902 4.37257 4.50818 4.54254 4.76283 4.88981 4.96517 5.01727 5.13584 5.14315 5.19001 5.23760 5.26579 5.30349 5.40631 5.48750 5.57197 5.59980 5.63271 5.70912 5.78560 5.81287 5.90146 5.94675 5.97165 6.00956 6.04470 6.09368 6.15673 6.19389 6.34006 6.43258 6.53218 6.60980 6.62998 6.76018 6.78796 7.03910 7.30347 7.67202 7.74395 8.29303 8.38090 8.81296 9.66574 10.17001 11.18186 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.003790 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.763036 B = 7386.641141 C = 7736.887497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C 0.159 3.841 4 H 0.045 0.955 5 C 0.134 3.866 6 H 0.095 0.905 7 N -0.714 5.714 8 C 0.531 3.469 9 O -0.539 6.539 10 C -0.087 4.087 11 C -0.138 4.138 12 C -0.081 4.081 13 C -0.172 4.172 14 H 0.109 0.891 15 C -0.153 4.153 16 C -0.156 4.156 17 H 0.110 0.890 18 C -0.072 4.072 19 C -0.140 4.140 20 C 0.112 3.888 21 N -0.598 5.598 22 C -0.234 4.234 23 H 0.095 0.905 24 C 0.025 3.975 25 N -0.907 5.907 26 Si 0.877 3.123 27 H -0.287 1.287 28 H -0.302 1.302 29 H -0.271 1.271 30 H 0.031 0.969 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.398 0.602 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.029 0.971 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.149 -3.299 -17.941 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C 0.051 3.949 4 H 0.063 0.937 5 C 0.029 3.971 6 H 0.113 0.887 7 N -0.365 5.365 8 C 0.317 3.683 9 O -0.415 6.415 10 C -0.090 4.090 11 C -0.195 4.195 12 C -0.119 4.119 13 C -0.190 4.190 14 H 0.127 0.873 15 C -0.190 4.190 16 C -0.174 4.174 17 H 0.128 0.872 18 C -0.110 4.110 19 C -0.179 4.179 20 C -0.014 4.014 21 N -0.324 5.324 22 C -0.361 4.361 23 H 0.113 0.887 24 C -0.174 4.174 25 N -0.550 5.550 26 Si 0.707 3.293 27 H -0.214 1.214 28 H -0.230 1.230 29 H -0.196 1.196 30 H 0.050 0.950 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.233 0.767 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.046 0.954 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.468 -3.660 -17.206 22.155 hybrid contribution 0.268 -0.268 0.674 0.774 sum 13.736 -3.928 -16.532 21.850 Atomic orbital electron populations 1.21944 0.95393 0.99315 1.04404 1.21895 0.97195 0.97349 0.99932 1.21186 0.90173 0.92532 0.90980 0.93738 1.22092 0.95577 0.99052 0.80366 0.88657 1.46003 1.18546 1.57971 1.13969 1.20166 0.81307 0.78292 0.88583 1.90666 1.52529 1.40468 1.57837 1.21966 0.97227 0.97091 0.92724 1.21776 1.02850 0.92483 1.02410 1.22017 0.98586 0.92820 0.98445 1.23203 0.91916 0.98090 1.05757 0.87314 1.23055 1.01577 1.01868 0.92497 1.23169 0.98833 0.98108 0.97294 0.87176 1.21842 0.94981 0.92373 1.01806 1.23118 0.98906 0.98368 0.97528 1.21956 0.86404 0.98802 0.94203 1.44761 1.01816 1.66300 1.19566 1.18567 0.82877 1.43312 0.91384 0.88742 1.25081 0.96150 0.99466 0.96688 1.69830 1.28002 1.42430 1.14749 0.87015 0.81015 0.80124 0.81175 1.21450 1.23020 1.19616 0.94975 0.88804 0.94021 0.93938 0.92506 0.76740 0.91412 0.91806 0.91776 0.90613 0.90283 0.89072 0.88607 0.90925 0.89910 0.91447 0.91040 0.92246 0.95372 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.06 37.16 0.34 -2.53 16 2 C -0.12 -2.26 5.45 -26.73 -0.15 -2.41 16 3 C 0.16 2.96 2.99 -66.95 -0.20 2.76 16 4 H 0.04 0.81 7.72 -51.93 -0.40 0.41 16 5 C 0.13 2.24 2.85 -66.09 -0.19 2.06 16 6 H 0.10 1.76 7.25 -51.93 -0.38 1.38 16 7 N -0.71 -9.59 4.91 -52.03 -0.26 -9.85 16 8 C 0.53 7.28 6.24 -10.99 -0.07 7.21 16 9 O -0.54 -9.41 15.21 5.56 0.08 -9.33 16 10 C -0.09 -0.87 0.77 -153.66 -0.12 -0.99 16 11 C -0.14 -1.11 8.55 37.16 0.32 -0.80 16 12 C -0.08 -0.72 5.55 -25.07 -0.14 -0.86 16 13 C -0.17 -1.68 6.77 -89.50 -0.61 -2.28 16 14 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 15 C -0.15 -1.26 10.07 -26.73 -0.27 -1.53 16 16 C -0.16 -1.60 6.61 -89.50 -0.59 -2.19 16 17 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.07 -0.73 5.25 -25.08 -0.13 -0.86 16 19 C -0.14 -2.44 6.77 -24.58 -0.17 -2.61 16 20 C 0.11 2.40 4.79 -2.53 -0.01 2.39 16 21 N -0.60 -13.68 2.87 -162.57 -0.47 -14.14 16 22 C -0.23 -6.23 7.98 -15.06 -0.12 -6.35 16 23 H 0.10 2.65 7.13 -52.48 -0.37 2.28 16 24 C 0.03 0.71 5.44 -17.43 -0.09 0.61 16 25 N -0.91 -27.21 13.97 55.49 0.78 -26.43 16 26 Si 0.88 22.31 24.47 -169.99 -4.16 18.15 16 27 H -0.29 -7.18 7.01 56.52 0.40 -6.78 16 28 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 29 H -0.27 -6.81 6.35 56.52 0.36 -6.45 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 2.09 5.37 -51.93 -0.28 1.81 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.40 4.48 7.61 -40.82 -0.31 4.17 16 36 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.49 7.55 -51.93 -0.39 0.10 16 39 H 0.08 0.67 7.73 -51.93 -0.40 0.27 16 40 H 0.08 0.57 8.01 -51.93 -0.42 0.16 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 44 H 0.08 0.97 7.42 -51.93 -0.39 0.58 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.06 1.35 7.32 -51.93 -0.38 0.97 16 48 H 0.03 0.65 5.26 -51.93 -0.27 0.37 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -30.87 369.40 -9.31 -40.18 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -8.66 Total: 4.23 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.20 Total: -8.38 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.05 Total: -50.42 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.16 Total: 18.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.87 -9.31 -40.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087670168.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.793 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds