Wall clock time and date at job start Fri Apr 10 2020 21:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47015 * 2 1 4 4 H 1.09002 * 110.00422 * 54.10709 * 3 2 1 5 5 C 1.54338 * 109.98862 * 293.07120 * 3 2 1 6 6 H 1.09001 * 110.66923 * 337.04940 * 5 3 2 7 7 N 1.46502 * 110.85002 * 100.20093 * 5 3 2 8 8 C 1.34776 * 119.99969 * 200.14878 * 7 5 3 9 9 O 1.21272 * 120.00193 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99726 * 180.02562 * 8 7 5 11 11 C 1.53007 * 109.46912 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.63818 * 54.99408 * 11 10 8 13 13 C 1.53020 * 109.63616 * 294.57651 * 11 10 8 14 14 C 1.50074 * 110.14621 * 190.88092 * 13 11 10 15 15 C 1.29440 * 124.06980 * 17.13024 * 14 13 11 16 16 C 1.50061 * 124.08101 * 359.50956 * 15 14 13 17 17 C 1.52978 * 110.28813 * 17.02294 * 16 15 14 18 18 C 1.55156 * 103.02099 * 218.66747 * 5 3 2 19 19 C 1.54908 * 101.58078 * 35.30741 * 18 5 3 20 20 N 1.47024 * 109.88517 * 175.20764 * 3 2 1 21 21 C 1.36938 * 125.64390 * 298.39359 * 20 3 2 22 22 H 1.07997 * 120.00078 * 347.62963 * 21 20 3 23 23 C 1.38818 * 119.99530 * 167.63047 * 21 20 3 24 24 N 1.31617 * 120.00311 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99485 * 179.72205 * 23 21 20 26 26 H 1.48492 * 109.47282 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.46625 * 120.00355 * 25 23 21 28 28 H 1.48499 * 109.46876 * 240.00132 * 25 23 21 29 29 H 1.09000 * 109.46790 * 65.43692 * 1 2 3 30 30 H 1.08997 * 109.47061 * 185.43975 * 1 2 3 31 31 H 1.09000 * 109.47193 * 305.43913 * 1 2 3 32 32 H 1.08998 * 109.47464 * 239.99662 * 2 1 3 33 33 H 1.09004 * 109.46980 * 119.99059 * 2 1 3 34 34 H 0.97004 * 119.99911 * 20.14787 * 7 5 3 35 35 H 1.09004 * 109.47063 * 299.99381 * 10 8 7 36 36 H 1.08997 * 109.47120 * 59.99437 * 10 8 7 37 37 H 1.09005 * 109.36099 * 311.08305 * 13 11 10 38 38 H 1.08997 * 109.35940 * 70.67495 * 13 11 10 39 39 H 1.08000 * 117.96372 * 197.15250 * 14 13 11 40 40 H 1.08002 * 117.95943 * 179.53319 * 15 14 13 41 41 H 1.09003 * 109.36122 * 137.36125 * 16 15 14 42 42 H 1.08998 * 109.36026 * 257.08374 * 16 15 14 43 43 H 1.08996 * 109.79205 * 191.08266 * 17 16 15 44 44 H 1.09005 * 109.47400 * 70.45803 * 17 16 15 45 45 H 1.09004 * 111.00612 * 277.23341 * 18 5 3 46 46 H 1.09000 * 111.00531 * 153.38616 * 18 5 3 47 47 H 1.09000 * 110.36747 * 204.15323 * 19 18 5 48 48 H 1.09001 * 110.36855 * 81.82985 * 19 18 5 49 49 H 0.96991 * 120.00107 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9942 0.8298 5 6 1.6800 2.1294 -1.3344 6 1 1.5224 1.3885 -2.1182 7 7 0.4961 2.9786 -1.1810 8 6 -0.2204 3.3381 -2.2644 9 8 0.1151 2.9589 -3.3664 10 6 -1.4378 4.2122 -2.1066 11 6 -2.0630 4.4686 -3.4793 12 1 -2.2728 3.5181 -3.9696 13 6 -1.0982 5.2887 -4.3386 14 6 -1.7929 5.7719 -5.5780 15 6 -3.0788 5.8041 -5.7227 16 6 -4.0544 5.3530 -4.6755 17 6 -3.3653 5.2617 -3.3127 18 6 2.9364 2.9884 -1.6356 19 6 4.0699 2.0823 -1.0933 20 7 3.5056 1.4548 0.1155 21 6 4.2273 0.9597 1.1688 22 1 3.7278 0.6971 2.0896 23 6 5.6008 0.7954 1.0528 24 7 6.2095 1.1159 -0.0693 25 14 6.5863 0.1274 2.4923 26 1 5.6743 -0.1479 3.6313 27 1 7.2645 -1.1298 2.0867 28 1 7.6035 1.1285 2.9027 29 1 -0.3633 0.4272 -0.9347 30 1 -0.3633 -1.0230 0.0974 31 1 -0.3633 0.5959 0.8373 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 0.2280 3.2822 -0.2995 35 1 -2.1635 3.7120 -1.4651 36 1 -1.1477 5.1612 -1.6559 37 1 -0.7434 6.1457 -3.7659 38 1 -0.2478 4.6676 -4.6199 39 1 -1.1820 6.1137 -6.4004 40 1 -3.4742 6.1786 -6.6553 41 1 -4.8776 6.0651 -4.6178 42 1 -4.4443 4.3711 -4.9439 43 1 -4.0168 4.7515 -2.6032 44 1 -3.1397 6.2651 -2.9517 45 1 2.9011 3.9349 -1.0962 46 1 3.0482 3.1550 -2.7070 47 1 4.9441 2.6807 -0.8370 48 1 4.3321 1.3216 -1.8285 49 1 7.1693 1.0015 -0.1502 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087688758.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:54:47 Heat of formation + Delta-G solvation = -22.791345 kcal Electronic energy + Delta-G solvation = -25983.042932 eV Core-core repulsion = 22523.768229 eV Total energy + Delta-G solvation = -3459.274703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.03985 -38.59380 -37.44775 -33.97488 -32.92268 -32.71300 -31.65003 -30.87224 -29.11007 -27.61837 -26.21104 -24.34859 -23.34578 -22.33788 -21.39145 -20.38464 -20.08365 -19.33528 -18.07387 -16.87089 -16.67413 -16.17597 -15.78288 -15.03910 -14.75729 -14.52746 -14.16121 -13.98655 -13.80174 -13.44360 -13.39056 -12.91762 -12.73749 -12.67125 -12.45004 -12.16377 -12.03167 -11.93854 -11.70521 -11.58123 -11.12701 -10.89958 -10.85042 -10.80904 -10.68844 -10.60449 -10.41513 -10.28248 -10.23097 -10.05405 -9.73817 -9.64824 -9.42445 -9.04182 -8.63857 -8.53002 -6.82885 -5.74709 -3.11238 2.20857 2.87319 3.37118 3.41055 3.45231 3.46428 4.46965 4.50821 4.56769 4.68964 4.95419 5.03095 5.15992 5.23390 5.29654 5.35505 5.36841 5.48131 5.51616 5.55146 5.56283 5.60817 5.68413 5.70507 5.74977 5.81593 5.83138 5.87324 6.04538 6.05969 6.19164 6.24298 6.31641 6.35239 6.41657 6.46839 6.56421 6.59585 6.70231 6.75556 6.88522 6.95356 7.16471 7.53409 7.60038 7.79092 7.80949 8.26403 8.50274 9.17896 9.78968 10.46087 11.36311 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.030275 B = 0.002880 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.629817 B = 9721.309861 C =10273.057861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.138 3.862 6 H 0.090 0.910 7 N -0.717 5.717 8 C 0.510 3.490 9 O -0.540 6.540 10 C -0.138 4.138 11 C -0.069 4.069 12 H 0.080 0.920 13 C -0.094 4.094 14 C -0.142 4.142 15 C -0.170 4.170 16 C -0.088 4.088 17 C -0.116 4.116 18 C -0.155 4.155 19 C 0.172 3.828 20 N -0.595 5.595 21 C -0.226 4.226 22 H 0.076 0.924 23 C -0.005 4.005 24 N -0.917 5.917 25 Si 0.910 3.090 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.025 0.975 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.129 8.524 -5.317 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.034 3.966 6 H 0.108 0.892 7 N -0.367 5.367 8 C 0.296 3.704 9 O -0.418 6.418 10 C -0.178 4.178 11 C -0.088 4.088 12 H 0.098 0.902 13 C -0.131 4.131 14 C -0.160 4.160 15 C -0.189 4.189 16 C -0.125 4.125 17 C -0.154 4.154 18 C -0.195 4.195 19 C 0.047 3.953 20 N -0.319 5.319 21 C -0.354 4.354 22 H 0.094 0.906 23 C -0.202 4.202 24 N -0.564 5.564 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.043 0.957 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.632 8.206 -6.056 21.240 hybrid contribution 0.509 -0.262 1.073 1.216 sum -18.123 7.944 -4.984 20.406 Atomic orbital electron populations 1.21763 0.97267 1.00480 1.00880 1.22020 0.93602 0.99226 1.02349 1.21069 0.87183 0.93330 0.93121 0.94796 1.22067 0.83651 0.92342 0.98550 0.89209 1.46130 1.28925 1.52154 1.09474 1.20590 0.84362 0.80842 0.84566 1.90660 1.70463 1.55400 1.25265 1.21781 0.96103 1.00392 0.99545 1.20930 0.94342 0.99610 0.93935 0.90169 1.20657 0.99053 0.99286 0.94088 1.22133 0.95681 0.99518 0.98697 1.21975 0.94960 1.02469 0.99447 1.20391 0.97234 1.01173 0.93706 1.21676 0.96364 1.00485 0.96863 1.23405 0.96736 0.99052 1.00290 1.21483 0.93303 0.93174 0.87351 1.44484 0.98511 1.69305 1.19630 1.19000 0.89439 1.35871 0.91109 0.90603 1.24882 0.96921 1.01205 0.97202 1.69934 1.08851 1.52954 1.24652 0.86076 0.80090 0.78378 0.81396 1.20477 1.21722 1.21760 0.93323 0.93722 0.93452 0.92458 0.91709 0.76980 0.89041 0.89066 0.91437 0.88789 0.88250 0.88403 0.91353 0.91118 0.91614 0.91764 0.92165 0.91968 0.90311 0.95737 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.66 37.16 0.36 -1.75 16 2 C -0.13 -2.43 5.43 -26.73 -0.15 -2.57 16 3 C 0.16 3.15 2.92 -66.94 -0.20 2.95 16 4 H 0.03 0.65 7.69 -51.93 -0.40 0.25 16 5 C 0.14 2.45 2.00 -66.09 -0.13 2.32 16 6 H 0.09 1.75 7.33 -51.93 -0.38 1.37 16 7 N -0.72 -9.89 5.02 -52.02 -0.26 -10.15 16 8 C 0.51 6.97 7.58 -10.98 -0.08 6.89 16 9 O -0.54 -9.39 13.78 5.56 0.08 -9.31 16 10 C -0.14 -1.32 5.18 -27.88 -0.14 -1.46 16 11 C -0.07 -0.70 1.87 -90.40 -0.17 -0.87 16 12 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 13 C -0.09 -1.06 5.05 -28.18 -0.14 -1.20 16 14 C -0.14 -1.47 9.81 -35.90 -0.35 -1.83 16 15 C -0.17 -1.58 9.81 -35.90 -0.35 -1.93 16 16 C -0.09 -0.71 6.11 -28.20 -0.17 -0.88 16 17 C -0.12 -0.93 5.32 -26.54 -0.14 -1.07 16 18 C -0.16 -3.03 6.77 -24.58 -0.17 -3.20 16 19 C 0.17 4.16 5.46 -2.53 -0.01 4.14 16 20 N -0.59 -14.60 3.13 -162.56 -0.51 -15.11 16 21 C -0.23 -6.08 9.73 -15.06 -0.15 -6.22 16 22 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.01 -0.15 5.47 -17.43 -0.10 -0.24 16 24 N -0.92 -26.56 10.48 55.49 0.58 -25.98 16 25 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 H 0.05 0.70 7.49 -51.93 -0.39 0.31 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 33 H 0.06 1.28 7.85 -51.93 -0.41 0.87 16 34 H 0.40 4.53 8.32 -40.82 -0.34 4.19 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.09 1.30 6.25 -51.93 -0.32 0.98 16 39 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.08 2.12 6.74 -51.93 -0.35 1.77 16 48 H 0.02 0.65 8.11 -51.93 -0.42 0.23 16 49 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 378.88 15.07 5.71 5.71 Total: -1.00 -30.44 378.88 -10.40 -40.83 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.88 Total: 4.21 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.09 Total: -6.93 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.19 Total: -51.24 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.44 -10.40 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087688758.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.039 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds