Wall clock time and date at job start Fri Apr 10 2020 21:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00146 * 2 1 4 4 C 1.53001 * 109.47078 * 359.97438 * 3 2 1 5 5 C 1.53009 * 109.47008 * 240.00085 * 3 2 1 6 6 C 1.53000 * 109.47173 * 120.00042 * 3 2 1 7 7 C 1.50700 * 109.46807 * 180.02562 * 6 3 2 8 8 O 1.21279 * 120.00516 * 359.97438 * 7 6 3 9 9 N 1.34785 * 119.99636 * 180.02562 * 7 6 3 10 10 C 1.46497 * 119.99585 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46756 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47173 * 180.02562 * 11 10 9 13 13 C 1.29460 * 117.69667 * 94.99794 * 12 11 10 14 14 C 1.50324 * 123.65257 * 181.14156 * 13 12 11 15 15 N 1.47122 * 109.10054 * 348.53834 * 14 13 12 16 16 C 1.36943 * 121.53573 * 223.15756 * 15 14 13 17 17 H 1.07994 * 120.00029 * 156.23909 * 16 15 14 18 18 C 1.38816 * 119.99651 * 336.23681 * 16 15 14 19 19 N 1.31620 * 119.99998 * 344.48177 * 18 16 15 20 20 Si 1.86801 * 119.99831 * 164.48178 * 18 16 15 21 21 H 1.48492 * 109.47157 * 60.00093 * 20 18 16 22 22 H 1.48503 * 109.46921 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46909 * 299.99543 * 20 18 16 24 24 C 1.47335 * 117.09210 * 43.38437 * 15 14 13 25 25 C 1.49964 * 117.69405 * 275.02133 * 12 11 10 26 26 H 1.07999 * 120.00297 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99740 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99740 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46642 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47047 * 299.99774 * 4 3 2 31 31 H 1.08996 * 109.47191 * 59.99934 * 4 3 2 32 32 H 1.09001 * 109.46560 * 299.99736 * 5 3 2 33 33 H 1.08997 * 109.46989 * 59.99614 * 5 3 2 34 34 H 1.09000 * 109.46866 * 179.97438 * 5 3 2 35 35 H 1.08996 * 109.47204 * 59.99821 * 6 3 2 36 36 H 1.08996 * 109.46819 * 299.99897 * 6 3 2 37 37 H 0.96993 * 119.99535 * 359.97438 * 9 7 6 38 38 H 1.08996 * 109.47314 * 59.99927 * 10 9 7 39 39 H 1.08996 * 109.47468 * 299.99537 * 10 9 7 40 40 H 1.08996 * 109.47204 * 59.99939 * 11 10 9 41 41 H 1.09004 * 109.47376 * 299.99814 * 11 10 9 42 42 H 1.08001 * 118.17174 * 0.86235 * 13 12 11 43 43 H 1.08996 * 109.52061 * 108.64573 * 14 13 12 44 44 H 1.09003 * 109.51767 * 228.83796 * 14 13 12 45 45 H 0.97003 * 119.99843 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.78168 * 178.39332 * 24 15 14 47 47 H 1.09002 * 109.77935 * 57.58413 * 24 15 14 48 48 H 1.09005 * 109.31203 * 281.28477 * 25 12 11 49 49 H 1.08995 * 109.31683 * 40.71451 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2493 6 6 2.9432 1.3861 1.2492 7 6 3.6962 2.6915 1.2495 8 8 3.5447 3.4792 0.3399 9 7 4.5389 2.9831 2.2601 10 6 5.2714 4.2518 2.2601 11 6 6.1509 4.3329 3.5094 12 6 6.9039 5.6383 3.5097 13 6 6.3912 6.6285 4.1674 14 6 7.0150 7.9944 4.2368 15 7 8.3809 7.9280 3.6943 16 6 9.4274 8.5622 4.3091 17 1 10.4376 8.2148 4.1506 18 6 9.1897 9.6516 5.1359 19 7 8.0262 10.2658 5.0970 20 14 10.5211 10.2460 6.3036 21 1 11.7218 10.6420 5.5249 22 1 10.0206 11.4147 7.0711 23 1 10.8787 9.1535 7.2437 24 6 8.5742 7.1530 2.4562 25 6 8.1941 5.6988 2.7478 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.6144 3.4119 -0.0011 30 1 0.4430 2.4101 -0.8909 31 1 0.4423 2.4105 0.8891 32 1 3.6515 0.5575 -1.2492 33 1 2.3165 1.3283 -2.1393 34 1 3.4879 2.3302 -1.2495 35 1 3.6514 0.5576 1.2493 36 1 2.3165 1.3284 2.1392 37 1 4.6604 2.3529 2.9874 38 1 4.5631 5.0803 2.2604 39 1 5.8978 4.3097 1.3700 40 1 6.8592 3.5045 3.5095 41 1 5.5242 4.2752 4.3994 42 1 5.4612 6.4654 4.6917 43 1 6.4207 8.6964 3.6520 44 1 7.0537 8.3248 5.2749 45 1 7.8600 11.0268 5.6750 46 1 9.6179 7.2065 2.1467 47 1 7.9343 7.5506 1.6685 48 1 8.9830 5.2312 3.3370 49 1 8.0829 5.1597 1.8070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160242564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:51:04 Heat of formation + Delta-G solvation = 8.794130 kcal Electronic energy + Delta-G solvation = -24908.606672 eV Core-core repulsion = 21450.701618 eV Total energy + Delta-G solvation = -3457.905054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.35974 -38.08361 -37.33624 -35.34764 -33.56676 -31.69430 -31.31501 -29.90324 -29.20246 -27.71942 -27.43646 -25.22026 -23.27182 -22.71122 -22.22818 -20.98487 -20.40122 -18.44258 -17.61396 -17.19631 -16.20989 -15.88830 -15.77090 -15.40909 -15.04817 -14.70223 -14.39119 -14.14692 -13.93706 -13.66116 -13.45182 -13.37776 -12.92945 -12.63818 -12.32407 -12.16953 -11.99602 -11.92672 -11.71085 -11.46139 -11.35583 -11.33395 -11.15997 -10.95878 -10.89115 -10.85557 -10.71567 -10.32525 -10.23979 -9.80786 -9.69880 -9.64612 -9.47280 -9.07694 -8.63955 -7.90960 -6.71544 -5.77215 -3.15829 1.97589 2.53702 2.84500 3.21413 3.39695 3.45071 3.46268 4.39531 4.49554 4.50932 4.66054 4.86292 4.98301 5.08769 5.11988 5.23015 5.27029 5.29686 5.37143 5.41107 5.51939 5.57308 5.62382 5.65908 5.79072 5.81054 5.82219 5.91887 6.02267 6.05724 6.14880 6.21061 6.23072 6.27686 6.32414 6.41384 6.51080 6.52204 6.57108 6.80584 6.91992 7.24623 7.33420 7.39267 7.43649 7.76059 7.89697 8.15981 8.40631 9.21941 9.84869 10.43959 11.33156 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.041898 B = 0.002132 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.122809 B =13127.046381 C =13231.314619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.020 4.020 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.129 4.129 7 C 0.510 3.490 8 O -0.530 6.530 9 N -0.732 5.732 10 C 0.124 3.876 11 C -0.091 4.091 12 C -0.142 4.142 13 C -0.147 4.147 14 C 0.196 3.804 15 N -0.595 5.595 16 C -0.245 4.245 17 H 0.068 0.932 18 C -0.003 4.003 19 N -0.910 5.910 20 Si 0.905 3.095 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.142 3.858 25 C -0.091 4.091 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.398 0.602 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.038 0.962 44 H 0.091 0.909 45 H 0.254 0.746 46 H 0.056 0.944 47 H 0.023 0.977 48 H 0.062 0.938 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.336 -21.239 -6.848 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.163 4.163 3 C -0.020 4.020 4 C -0.213 4.213 5 C -0.207 4.207 6 C -0.169 4.169 7 C 0.297 3.703 8 O -0.408 6.408 9 N -0.383 5.383 10 C 0.001 3.999 11 C -0.129 4.129 12 C -0.143 4.143 13 C -0.166 4.166 14 C 0.071 3.929 15 N -0.319 5.319 16 C -0.374 4.374 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.016 3.984 25 C -0.130 4.130 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.232 0.768 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.056 0.944 44 H 0.109 0.891 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.041 0.959 48 H 0.080 0.920 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.468 -20.482 -7.402 25.095 hybrid contribution 0.591 -0.170 1.139 1.294 sum -11.877 -20.652 -6.263 24.633 Atomic orbital electron populations 1.24029 0.96201 1.02086 1.01048 1.22954 0.95937 0.97584 0.99848 1.19373 0.94947 0.93252 0.94463 1.22188 0.98539 0.99731 1.00862 1.22061 0.99213 1.03604 0.95792 1.21715 0.99273 0.95774 1.00161 1.20630 0.79353 0.88550 0.81739 1.90597 1.64237 1.50619 1.35316 1.46185 1.45132 1.21686 1.25314 1.21422 0.94563 0.84950 0.98953 1.20905 0.97630 0.97700 0.96693 1.20226 0.97523 0.93904 1.02671 1.23120 0.98542 0.97865 0.97086 1.19726 0.84280 0.88459 1.00433 1.44162 1.05151 1.58622 1.23916 1.19142 0.87655 1.07466 1.23177 0.91427 1.24995 0.97235 0.96045 1.01762 1.70009 1.23161 1.21878 1.40458 0.86320 0.81211 0.77854 0.81096 1.20940 1.21648 1.21136 1.20956 0.98634 0.89543 0.89284 1.20756 0.94610 0.99880 0.97740 0.88773 0.87770 0.87562 0.89403 0.92803 0.93261 0.93443 0.92997 0.89356 0.88926 0.88955 0.76819 0.91356 0.91325 0.91538 0.91611 0.89110 0.94426 0.89128 0.93587 0.92564 0.95880 0.91978 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.37 13.70 29.01 0.40 -0.98 16 2 C -0.15 -1.06 8.76 -36.03 -0.32 -1.38 16 3 C -0.02 -0.17 0.74 -155.66 -0.11 -0.29 16 4 C -0.16 -1.50 6.83 37.16 0.25 -1.25 16 5 C -0.15 -1.43 8.16 37.16 0.30 -1.13 16 6 C -0.13 -1.00 4.75 -27.88 -0.13 -1.13 16 7 C 0.51 5.53 7.24 -10.98 -0.08 5.45 16 8 O -0.53 -7.59 11.35 5.56 0.06 -7.52 16 9 N -0.73 -7.21 5.56 -60.30 -0.33 -7.55 16 10 C 0.12 1.55 5.66 -4.04 -0.02 1.53 16 11 C -0.09 -1.16 5.32 -27.88 -0.15 -1.31 16 12 C -0.14 -2.44 5.11 -101.00 -0.52 -2.96 16 13 C -0.15 -2.84 9.47 -35.78 -0.34 -3.18 16 14 C 0.20 4.74 5.25 -5.04 -0.03 4.72 16 15 N -0.60 -15.16 3.01 -173.58 -0.52 -15.68 16 16 C -0.24 -6.78 9.71 -15.05 -0.15 -6.93 16 17 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 18 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 19 N -0.91 -26.49 11.07 55.49 0.61 -25.88 16 20 Si 0.91 21.82 29.58 -169.99 -5.03 16.80 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 C 0.14 3.03 6.57 -3.53 -0.02 3.00 16 25 C -0.09 -1.60 5.95 -28.18 -0.17 -1.77 16 26 H 0.09 0.54 8.06 -52.49 -0.42 0.12 16 27 H 0.10 0.74 5.69 -52.48 -0.30 0.44 16 28 H 0.11 0.66 8.06 -52.48 -0.42 0.24 16 29 H 0.09 1.06 5.51 -51.93 -0.29 0.78 16 30 H 0.05 0.49 7.50 -51.93 -0.39 0.10 16 31 H 0.05 0.43 7.50 -51.93 -0.39 0.04 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 1.05 5.51 -51.93 -0.29 0.77 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.40 2.78 8.47 -40.82 -0.35 2.43 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 40 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 41 H 0.07 0.78 7.78 -51.93 -0.40 0.38 16 42 H 0.09 1.56 7.73 -52.49 -0.41 1.15 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.09 2.43 6.40 -51.93 -0.33 2.09 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -31.01 381.88 -9.21 -40.22 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.59 Total: 1.61 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.16 Total: -7.75 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.24 Total: -49.11 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.06 Total: -7.52 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.01 -9.21 -40.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160242564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.014 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds