Wall clock time and date at job start Fri Apr 10 2020 21:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.47101 * 120.00131 * 2 1 4 4 O 1.21616 * 120.00155 * 155.41691 * 3 2 1 5 5 N 1.34780 * 119.99992 * 335.42122 * 3 2 1 6 6 C 1.46921 * 120.62889 * 353.63589 * 5 3 2 7 7 C 1.53195 * 108.77743 * 233.62993 * 6 5 3 8 8 C 1.53038 * 109.31166 * 305.36964 * 7 6 5 9 9 H 1.08999 * 109.45867 * 181.38676 * 8 7 6 10 10 N 1.46510 * 109.45913 * 301.35335 * 8 7 6 11 11 C 1.36927 * 119.99994 * 275.00271 * 10 8 7 12 12 H 1.08003 * 120.00117 * 0.02562 * 11 10 8 13 13 C 1.38817 * 119.99902 * 180.02562 * 11 10 8 14 14 N 1.31610 * 119.99931 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99846 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47496 * 59.99567 * 15 13 11 17 17 H 1.48503 * 109.46968 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46990 * 299.99291 * 15 13 11 19 19 C 1.53348 * 109.60911 * 61.36792 * 8 7 6 20 20 H 1.09000 * 109.47443 * 58.55543 * 19 8 7 21 21 C 1.53000 * 109.68426 * 178.74459 * 19 8 7 22 22 C 1.46928 * 120.62948 * 173.65909 * 5 3 2 23 23 C 1.32996 * 120.00395 * 180.02562 * 2 1 3 24 24 C 1.51441 * 126.34425 * 179.68688 * 23 2 1 25 25 C 1.54280 * 106.85146 * 180.23741 * 24 23 2 26 26 C 1.54985 * 103.66058 * 23.47938 * 25 24 23 27 27 C 1.51843 * 126.33635 * 359.97438 * 23 2 1 28 28 H 1.08999 * 109.47379 * 97.13646 * 1 2 3 29 29 H 1.09003 * 109.46481 * 217.13531 * 1 2 3 30 30 H 1.08997 * 109.46638 * 337.13213 * 1 2 3 31 31 H 1.09001 * 109.59027 * 353.42106 * 6 5 3 32 32 H 1.09003 * 109.58544 * 113.84163 * 6 5 3 33 33 H 1.09001 * 109.49586 * 65.31856 * 7 6 5 34 34 H 1.08998 * 109.49636 * 185.38245 * 7 6 5 35 35 H 0.96998 * 119.99514 * 95.00046 * 10 8 7 36 36 H 0.97005 * 120.00083 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.47304 * 179.75621 * 21 19 8 38 38 H 1.09000 * 109.47789 * 299.75774 * 21 19 8 39 39 H 1.09004 * 109.47116 * 59.75528 * 21 19 8 40 40 H 1.09001 * 109.58537 * 246.15593 * 22 5 3 41 41 H 1.08993 * 109.58773 * 6.43914 * 22 5 3 42 42 H 1.09000 * 109.98294 * 299.72220 * 24 23 2 43 43 H 1.09000 * 109.98598 * 61.02809 * 24 23 2 44 44 H 1.08998 * 110.79274 * 264.85790 * 25 24 23 45 45 H 1.09005 * 110.55692 * 141.99196 * 25 24 23 46 46 H 1.08996 * 110.83293 * 204.48819 * 26 25 24 47 47 H 1.09001 * 110.99963 * 80.99315 * 26 25 24 48 48 H 1.09003 * 110.44871 * 274.93350 * 27 23 2 49 49 H 1.09003 * 110.44349 * 37.33307 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.3760 1.3217 0.4381 5 7 1.6602 2.3883 -0.4855 6 6 0.3485 2.3213 -1.1439 7 6 0.4562 2.9748 -2.5253 8 6 1.0113 4.3927 -2.3726 9 1 1.0658 4.8687 -3.3516 10 7 0.1285 5.1711 -1.5000 11 6 -0.9707 5.7986 -2.0223 12 1 -1.1873 5.7194 -3.0774 13 6 -1.8068 6.5365 -1.1956 14 7 -1.5432 6.6325 0.0903 15 14 -3.3069 7.3920 -1.9080 16 1 -4.2077 6.3830 -2.5209 17 1 -4.0294 8.1074 -0.8256 18 1 -2.8764 8.3653 -2.9436 19 6 2.4140 4.3326 -1.7560 20 1 3.0651 3.7328 -2.3919 21 6 2.9833 5.7473 -1.6313 22 6 2.3255 3.6929 -0.3668 23 6 2.1721 -1.1517 -0.0005 24 6 3.6772 -1.3190 -0.0073 25 6 3.9586 -2.8359 -0.0112 26 6 2.6647 -3.4467 -0.6069 27 6 1.5627 -2.5425 -0.0006 28 1 -0.3634 -0.1277 -1.0197 29 1 -0.3632 -0.8193 0.6204 30 1 -0.3632 0.9469 0.3994 31 1 0.0480 1.2795 -1.2549 32 1 -0.3891 2.8545 -0.5440 33 1 1.1256 2.3878 -3.1542 34 1 -0.5310 3.0175 -2.9854 35 1 0.3228 5.2418 -0.5523 36 1 -2.1273 7.1485 0.6679 37 1 3.9783 5.7010 -1.1888 38 1 3.0461 6.2022 -2.6199 39 1 2.3308 6.3469 -0.9965 40 1 1.7491 4.3380 0.2964 41 1 3.3285 3.5563 0.0372 42 1 4.0993 -0.8574 -0.8999 43 1 4.1065 -0.8649 0.8859 44 1 4.1233 -3.2015 1.0023 45 1 4.8164 -3.0644 -0.6438 46 1 2.5394 -4.4801 -0.2838 47 1 2.6661 -3.3799 -1.6948 48 1 1.3298 -2.8563 1.0170 49 1 0.6658 -2.5652 -0.6197 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035980229.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:50:09 Heat of formation + Delta-G solvation = -9.989299 kcal Electronic energy + Delta-G solvation = -26650.663105 eV Core-core repulsion = 23191.943541 eV Total energy + Delta-G solvation = -3458.719565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.27220 -38.42992 -37.23566 -34.67276 -33.54882 -32.38542 -31.32839 -29.17014 -29.04859 -27.99292 -26.15755 -25.42126 -23.77793 -23.07721 -21.59433 -20.88794 -20.32048 -18.48934 -17.64657 -17.29488 -16.23461 -15.96074 -15.55430 -15.12233 -14.72814 -14.41936 -14.11337 -14.06032 -13.52626 -13.44989 -13.24674 -13.04093 -12.96819 -12.61904 -12.46452 -12.37978 -12.10828 -11.73146 -11.43693 -11.29190 -11.28302 -11.20143 -11.13064 -10.95204 -10.87155 -10.79391 -10.72073 -10.43512 -10.21229 -10.11366 -9.79836 -9.52299 -9.32480 -8.90357 -8.76078 -8.06696 -6.95970 -5.78107 -3.06224 1.50984 3.32681 3.41921 3.47217 3.47813 3.48964 4.30280 4.52405 4.58017 4.81200 4.84802 4.99728 5.14864 5.25068 5.27880 5.38914 5.41248 5.42687 5.52166 5.55159 5.60247 5.65033 5.65470 5.69644 5.75373 5.86698 5.87293 5.90249 5.94975 6.01141 6.10610 6.12355 6.14203 6.15721 6.29931 6.36896 6.41623 6.47633 6.54296 6.61228 6.72523 6.75277 6.83066 6.98183 7.08324 7.68652 7.86003 8.40535 8.52397 9.51968 10.09506 10.44871 11.44299 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.003601 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.907619 B = 7774.123146 C = 8458.017338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.175 4.175 3 C 0.554 3.446 4 O -0.556 6.556 5 N -0.595 5.595 6 C 0.085 3.915 7 C -0.150 4.150 8 C 0.178 3.822 9 H 0.049 0.951 10 N -0.718 5.718 11 C -0.237 4.237 12 H 0.068 0.932 13 C -0.012 4.012 14 N -0.933 5.933 15 Si 0.904 3.096 16 H -0.287 1.287 17 H -0.292 1.292 18 H -0.287 1.287 19 C -0.108 4.108 20 H 0.064 0.936 21 C -0.137 4.137 22 C 0.119 3.881 23 C -0.052 4.052 24 C -0.093 4.093 25 C -0.127 4.127 26 C -0.124 4.124 27 C -0.096 4.096 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.337 -17.660 -1.674 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.178 4.178 3 C 0.344 3.656 4 O -0.436 6.436 5 N -0.326 5.326 6 C -0.036 4.036 7 C -0.191 4.191 8 C 0.068 3.932 9 H 0.067 0.933 10 N -0.361 5.361 11 C -0.368 4.368 12 H 0.086 0.914 13 C -0.208 4.208 14 N -0.581 5.581 15 Si 0.736 3.264 16 H -0.214 1.214 17 H -0.218 1.218 18 H -0.214 1.214 19 C -0.128 4.128 20 H 0.082 0.918 21 C -0.195 4.195 22 C -0.003 4.003 23 C -0.054 4.054 24 C -0.129 4.129 25 C -0.165 4.165 26 C -0.161 4.161 27 C -0.133 4.133 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.776 -17.513 -1.532 19.223 hybrid contribution -0.991 0.697 -0.144 1.220 sum 6.785 -16.816 -1.676 18.211 Atomic orbital electron populations 1.21103 0.90884 1.03412 1.01694 1.20783 0.96104 0.92018 1.08932 1.18314 0.85622 0.83749 0.77884 1.90712 1.18345 1.85880 1.48688 1.47966 1.20737 1.07048 1.56804 1.22623 0.83984 1.02642 0.94384 1.22528 1.01649 0.99179 0.95765 1.20270 0.88250 0.90263 0.94408 0.93346 1.42463 1.27556 1.58513 1.07541 1.19177 1.00882 1.23530 0.93225 0.91358 1.24695 0.99384 1.01158 0.95546 1.69637 1.39692 1.45648 1.03143 0.86317 0.83062 0.79445 0.77625 1.21382 1.21826 1.21405 1.21739 0.97982 0.96658 0.96376 0.91773 1.21659 0.99675 0.96008 1.02125 1.21616 0.98317 0.82908 0.97479 1.22565 0.96194 0.93418 0.93217 1.21229 0.92494 0.95535 1.03682 1.22434 0.97634 0.95369 1.01016 1.22512 0.94666 0.98538 1.00388 1.21522 0.98446 0.91670 1.01699 0.90460 0.91889 0.90297 0.88312 0.90016 0.93524 0.90915 0.78107 0.93503 0.93806 0.92889 0.91078 0.90824 0.89955 0.90635 0.89283 0.91454 0.91472 0.91246 0.91232 0.89812 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 7.38 36.01 0.27 -1.05 16 2 C -0.18 -2.41 5.65 -102.85 -0.58 -2.99 16 3 C 0.55 9.41 7.37 -12.66 -0.09 9.31 16 4 O -0.56 -10.69 14.09 5.26 0.07 -10.62 16 5 N -0.59 -10.08 2.97 -174.16 -0.52 -10.60 16 6 C 0.09 1.38 4.44 -3.71 -0.02 1.37 16 7 C -0.15 -2.54 5.78 -26.61 -0.15 -2.69 16 8 C 0.18 3.40 2.54 -67.72 -0.17 3.23 16 9 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 10 N -0.72 -16.67 3.65 -53.23 -0.19 -16.86 16 11 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 12 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 13 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 14 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16 15 Si 0.90 21.78 29.55 -169.99 -5.02 16.76 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 C -0.11 -1.84 2.68 -90.34 -0.24 -2.08 16 20 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 21 C -0.14 -2.27 9.07 37.16 0.34 -1.94 16 22 C 0.12 2.11 5.42 -3.71 -0.02 2.09 16 23 C -0.05 -0.63 6.10 -100.24 -0.61 -1.24 16 24 C -0.09 -1.11 5.01 -26.85 -0.13 -1.25 16 25 C -0.13 -1.13 6.88 -25.01 -0.17 -1.30 16 26 C -0.12 -0.98 6.94 -24.68 -0.17 -1.15 16 27 C -0.10 -0.86 5.75 -26.32 -0.15 -1.01 16 28 H 0.08 0.79 6.80 -51.93 -0.35 0.43 16 29 H 0.06 0.61 7.58 -51.93 -0.39 0.22 16 30 H 0.08 1.01 6.21 -51.93 -0.32 0.69 16 31 H 0.10 1.35 3.13 -52.78 -0.17 1.19 16 32 H 0.08 1.55 7.61 -51.93 -0.39 1.15 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.38 9.56 5.93 -40.82 -0.24 9.32 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.36 7.55 -51.93 -0.39 0.97 16 40 H 0.07 1.43 6.64 -51.93 -0.34 1.09 16 41 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.23 7.34 -51.93 -0.38 0.85 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.61 7.79 -51.93 -0.40 0.21 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -29.69 368.46 -9.92 -39.61 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -8.37 Total: 10.04 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.16 Total: -7.49 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.01 Total: -53.85 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.07 Total: -10.62 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.69 -9.92 -39.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035980229.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.618 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds