Wall clock time and date at job start Fri Apr 10 2020 21:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.86996 * 2 1 4 4 C 1.54321 * 109.88613 * 238.98324 * 2 1 3 5 5 H 1.09000 * 110.71351 * 336.59748 * 4 2 1 6 6 N 1.46505 * 110.71914 * 99.68589 * 4 2 1 7 7 C 1.34775 * 120.00147 * 204.99888 * 6 4 2 8 8 O 1.21284 * 119.99549 * 0.02562 * 7 6 4 9 9 C 1.50691 * 120.00132 * 180.02562 * 7 6 4 10 10 H 1.08997 * 109.79901 * 59.18166 * 9 7 6 11 11 C 1.54934 * 109.80532 * 298.30342 * 9 7 6 12 12 C 1.52715 * 108.57714 * 183.44132 * 11 9 7 13 13 C 1.50806 * 108.95303 * 302.18648 * 12 11 9 14 14 C 1.31661 * 118.08910 * 104.85620 * 13 12 11 15 15 C 1.50517 * 116.92312 * 0.27279 * 14 13 12 16 16 C 1.49511 * 113.04278 * 275.42899 * 15 14 13 17 17 C 1.51395 * 117.51527 * 79.71949 * 16 15 14 18 18 C 1.55150 * 102.94538 * 218.23125 * 4 2 1 19 19 C 1.54913 * 101.57964 * 35.50188 * 18 4 2 20 20 N 1.47026 * 110.01438 * 121.09223 * 2 1 3 21 21 C 1.36936 * 125.64988 * 298.41679 * 20 2 1 22 22 H 1.07999 * 119.99906 * 341.48891 * 21 20 2 23 23 C 1.38809 * 119.99834 * 161.49488 * 21 20 2 24 24 N 1.31619 * 120.00251 * 157.61231 * 23 21 20 25 25 Si 1.86805 * 120.00010 * 337.60870 * 23 21 20 26 26 H 1.48495 * 109.47172 * 84.54611 * 25 23 21 27 27 H 1.48497 * 109.46881 * 204.54446 * 25 23 21 28 28 H 1.48498 * 109.47152 * 324.54527 * 25 23 21 29 29 H 1.09003 * 109.46674 * 180.70693 * 1 2 3 30 30 H 1.09005 * 109.47195 * 300.69675 * 1 2 3 31 31 H 1.08991 * 109.47318 * 60.70443 * 1 2 3 32 32 H 0.97001 * 119.99811 * 25.01419 * 6 4 2 33 33 H 1.09002 * 109.61833 * 303.17351 * 11 9 7 34 34 H 1.09009 * 109.61629 * 63.71425 * 11 9 7 35 35 H 1.08991 * 109.55510 * 182.34354 * 12 11 9 36 36 H 1.08996 * 109.63888 * 62.07384 * 12 11 9 37 37 H 1.08000 * 120.95003 * 284.87695 * 13 12 11 38 38 H 1.07999 * 121.53387 * 180.29545 * 14 13 12 39 39 H 1.09004 * 108.76510 * 154.51544 * 15 14 13 40 40 H 1.08993 * 108.77051 * 36.35468 * 15 14 13 41 41 H 1.09001 * 107.83852 * 317.68723 * 16 15 14 42 42 H 1.08994 * 107.80371 * 201.72746 * 16 15 14 43 43 H 1.08999 * 109.26221 * 165.92066 * 17 16 15 44 44 H 1.08997 * 109.23327 * 46.44306 * 17 16 15 45 45 H 1.09002 * 111.00562 * 153.57389 * 18 4 2 46 46 H 1.08999 * 111.00585 * 277.39078 * 18 4 2 47 47 H 1.08999 * 110.36868 * 81.83297 * 19 18 4 48 48 H 1.09002 * 110.36296 * 204.04368 * 19 18 4 49 49 H 0.96991 * 120.00386 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 1.3061 -1.4456 -1.6185 6 7 2.4480 0.1991 -2.2902 7 6 2.4489 -0.1861 -3.5818 8 8 2.1239 -1.3165 -3.8776 9 6 2.8538 0.7877 -4.6582 10 1 3.8715 1.1343 -4.4786 11 6 1.8813 1.9937 -4.6679 12 6 2.2642 2.9182 -5.8215 13 6 3.6982 3.3513 -5.6468 14 6 4.6100 2.8034 -6.4226 15 6 4.1308 1.7897 -7.4267 16 6 4.0056 0.4138 -6.8550 17 6 2.7703 0.1068 -6.0353 18 6 3.2900 -1.5099 -0.6954 19 6 2.8196 -1.8768 0.7343 20 7 2.0332 -0.7134 1.1830 21 6 1.8088 -0.3562 2.4858 22 1 1.4879 0.6474 2.7229 23 6 1.9939 -1.2840 3.5015 24 7 2.2155 -0.8761 4.7331 25 14 1.9283 -3.1116 3.1206 26 1 3.2592 -3.5659 2.6438 27 1 1.5605 -3.8604 4.3491 28 1 0.9130 -3.3613 2.0660 29 1 -0.3633 -1.0276 0.0127 30 1 -0.3634 0.5246 0.8837 31 1 -0.3633 0.5028 -0.8961 32 1 2.7078 1.1032 -2.0536 33 1 0.8599 1.6391 -4.8065 34 1 1.9590 2.5341 -3.7244 35 1 1.6155 3.7941 -5.8178 36 1 2.1559 2.3878 -6.7675 37 1 3.9693 4.0893 -4.9064 38 1 5.6538 3.0690 -6.3419 39 1 4.8341 1.7609 -8.2590 40 1 3.1573 2.1027 -7.8039 41 1 4.8772 0.2330 -6.2259 42 1 4.0422 -0.2952 -7.6820 43 1 2.6881 -0.9715 -5.8989 44 1 1.8892 0.4707 -6.5637 45 1 3.4889 -2.4061 -1.2833 46 1 4.1666 -0.8628 -0.6648 47 1 2.1957 -2.7703 0.7108 48 1 3.6780 -2.0315 1.3880 49 1 2.3445 -1.5243 5.4430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088656713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:51:36 Heat of formation + Delta-G solvation = -3.526452 kcal Electronic energy + Delta-G solvation = -26298.432138 eV Core-core repulsion = 22839.992823 eV Total energy + Delta-G solvation = -3458.439314 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.38168 -38.81811 -37.65045 -34.20312 -33.49419 -33.12936 -32.03449 -30.70466 -29.39909 -27.49691 -26.24724 -24.70799 -23.90914 -22.27509 -21.88001 -20.85015 -20.17682 -19.36077 -18.27557 -17.31009 -16.91536 -16.10587 -16.09808 -15.21566 -15.04155 -14.77925 -14.65304 -14.17161 -13.93708 -13.70938 -13.42856 -13.26614 -13.00525 -12.79821 -12.59140 -12.29710 -12.13220 -11.83950 -11.71453 -11.56969 -11.52302 -11.19965 -11.14145 -11.00347 -10.86538 -10.78163 -10.63029 -10.46404 -10.25263 -10.11846 -9.98390 -9.61510 -9.43147 -9.17783 -8.80984 -8.64725 -7.08875 -5.95527 -3.26369 1.95212 2.73672 3.28710 3.35987 3.49826 3.52334 4.33800 4.45455 4.54938 4.64112 4.70167 4.77501 4.80872 4.94817 5.08165 5.13768 5.16207 5.25029 5.26546 5.30548 5.33554 5.40063 5.49618 5.58310 5.62277 5.70489 5.75517 5.84645 5.86983 5.87715 5.95004 5.96596 6.05687 6.11457 6.17853 6.23869 6.32906 6.40691 6.42208 6.49948 6.61682 6.62873 6.73763 6.81705 6.98716 7.66148 7.69437 8.29826 8.36303 8.81666 9.67821 10.15534 11.20456 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.027672 B = 0.003170 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.616127 B = 8830.110745 C = 9129.373109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.045 0.955 4 C 0.133 3.867 5 H 0.096 0.904 6 N -0.715 5.715 7 C 0.516 3.484 8 O -0.544 6.544 9 C -0.109 4.109 10 H 0.101 0.899 11 C -0.102 4.102 12 C -0.107 4.107 13 C -0.156 4.156 14 C -0.162 4.162 15 C -0.097 4.097 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.140 4.140 19 C 0.112 3.888 20 N -0.601 5.601 21 C -0.238 4.238 22 H 0.092 0.908 23 C 0.023 3.977 24 N -0.909 5.909 25 Si 0.881 3.119 26 H -0.285 1.285 27 H -0.303 1.303 28 H -0.276 1.276 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.399 0.601 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.027 0.973 48 H 0.062 0.938 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.812 7.632 -24.216 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.048 3.952 3 H 0.063 0.937 4 C 0.028 3.972 5 H 0.114 0.886 6 N -0.365 5.365 7 C 0.303 3.697 8 O -0.421 6.421 9 C -0.130 4.130 10 H 0.119 0.881 11 C -0.140 4.140 12 C -0.144 4.144 13 C -0.174 4.174 14 C -0.180 4.180 15 C -0.134 4.134 16 C -0.151 4.151 17 C -0.148 4.148 18 C -0.180 4.180 19 C -0.014 4.014 20 N -0.327 5.327 21 C -0.365 4.365 22 H 0.110 0.890 23 C -0.175 4.175 24 N -0.552 5.552 25 Si 0.711 3.289 26 H -0.212 1.212 27 H -0.231 1.231 28 H -0.202 1.202 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.045 0.955 48 H 0.080 0.920 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.579 6.789 -24.151 25.219 hybrid contribution 0.171 -0.603 0.236 0.669 sum 2.749 6.186 -23.915 24.854 Atomic orbital electron populations 1.22195 0.97234 1.01524 1.00475 1.21082 0.92838 0.95222 0.86040 0.93714 1.22113 0.97003 0.91177 0.86885 0.88570 1.46029 1.68459 1.15907 1.06077 1.20615 0.77006 0.88624 0.83490 1.90658 1.48248 1.20998 1.82227 1.21991 1.01513 0.95110 0.94420 0.88133 1.21825 0.98555 0.94573 0.99072 1.21033 0.94285 0.99286 0.99805 1.23097 0.95143 0.99802 0.99343 1.23035 0.98843 0.98142 0.97997 1.20097 1.01651 0.94147 0.97459 1.20495 0.98744 0.95975 0.99892 1.21475 0.97833 1.02586 0.92861 1.23123 0.97673 1.00107 0.97047 1.21950 0.95217 0.91127 0.93082 1.44818 1.57326 1.29079 1.01495 1.18577 1.42483 0.96819 0.78630 0.88995 1.24977 1.00096 0.97651 0.94818 1.69830 1.50773 1.33968 1.00659 0.87014 0.78276 0.87460 0.76144 1.21192 1.23070 1.20165 0.93088 0.92028 0.94069 0.76624 0.91042 0.91242 0.91276 0.89657 0.87089 0.86948 0.91896 0.90812 0.92383 0.92170 0.89277 0.91563 0.91354 0.91005 0.95534 0.91983 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.14 37.16 0.34 -2.46 16 2 C 0.16 2.94 3.47 -66.95 -0.23 2.71 16 3 H 0.05 0.82 7.72 -51.93 -0.40 0.42 16 4 C 0.13 2.24 2.84 -66.10 -0.19 2.05 16 5 H 0.10 1.76 7.26 -51.93 -0.38 1.38 16 6 N -0.71 -9.53 5.11 -52.04 -0.27 -9.79 16 7 C 0.52 6.97 7.17 -10.99 -0.08 6.89 16 8 O -0.54 -9.39 14.87 5.55 0.08 -9.31 16 9 C -0.11 -1.06 2.22 -90.31 -0.20 -1.26 16 10 H 0.10 0.94 6.29 -51.93 -0.33 0.61 16 11 C -0.10 -0.83 4.83 -25.86 -0.12 -0.96 16 12 C -0.11 -0.75 5.41 -27.98 -0.15 -0.90 16 13 C -0.16 -1.11 8.55 -36.13 -0.31 -1.41 16 14 C -0.16 -1.15 9.28 -36.27 -0.34 -1.48 16 15 C -0.10 -0.66 5.13 -29.69 -0.15 -0.81 16 16 C -0.11 -0.90 4.90 -29.26 -0.14 -1.04 16 17 C -0.11 -1.04 4.96 -27.10 -0.13 -1.18 16 18 C -0.14 -2.49 6.78 -24.58 -0.17 -2.66 16 19 C 0.11 2.45 4.69 -2.53 -0.01 2.44 16 20 N -0.60 -14.18 2.94 -162.57 -0.48 -14.66 16 21 C -0.24 -6.60 10.19 -15.06 -0.15 -6.75 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 23 C 0.02 0.67 5.43 -17.43 -0.09 0.58 16 24 N -0.91 -27.86 13.97 55.49 0.78 -27.08 16 25 Si 0.88 22.72 24.27 -169.99 -4.13 18.59 16 26 H -0.28 -7.10 6.49 56.52 0.37 -6.73 16 27 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 28 H -0.28 -7.07 6.66 56.52 0.38 -6.69 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.18 8.04 -51.93 -0.42 0.77 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.40 4.42 8.06 -40.82 -0.33 4.09 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.53 7.86 -51.92 -0.41 0.12 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.58 3.57 -51.93 -0.19 0.40 16 37 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.11 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.48 5.62 -51.93 -0.29 0.19 16 41 H 0.06 0.50 7.71 -51.93 -0.40 0.10 16 42 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 43 H 0.09 1.06 6.47 -51.93 -0.34 0.73 16 44 H 0.07 0.57 6.57 -51.93 -0.34 0.23 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.03 0.62 5.58 -51.93 -0.29 0.33 16 48 H 0.06 1.45 6.64 -51.93 -0.34 1.10 16 49 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -31.83 361.38 -9.00 -40.83 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.29 Total: 2.21 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.14 Total: -6.24 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.03 Total: -51.54 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.13 Total: 18.59 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.83 -9.00 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088656713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.304 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds