Wall clock time and date at job start Fri Apr 10 2020 21:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21278 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99835 * 180.02562 * 5 4 2 8 8 H 1.08995 * 109.47691 * 60.00211 * 7 5 4 9 9 C 1.52946 * 109.47837 * 299.99249 * 7 5 4 10 10 C 1.52932 * 109.82897 * 177.02369 * 9 7 5 11 11 C 1.53181 * 109.45340 * 62.98274 * 10 9 7 12 12 C 1.53157 * 108.88118 * 303.43843 * 11 10 9 13 13 C 1.52845 * 117.67776 * 268.50487 * 12 11 10 14 14 C 1.52804 * 117.75015 * 199.62233 * 12 11 10 15 15 C 1.53152 * 115.01159 * 53.93424 * 12 11 10 16 16 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 17 17 C 1.53493 * 114.21093 * 300.00230 * 16 2 1 18 18 N 1.47063 * 87.98878 * 87.52231 * 17 16 2 19 19 C 1.36937 * 136.06294 * 207.09193 * 18 17 16 20 20 H 1.08002 * 119.99154 * 8.42658 * 19 18 17 21 21 C 1.38809 * 120.00444 * 188.43562 * 19 18 17 22 22 N 1.31615 * 120.00184 * 174.84707 * 21 19 18 23 23 Si 1.86804 * 119.99817 * 354.84535 * 21 19 18 24 24 H 1.48500 * 109.46921 * 174.85685 * 23 21 19 25 25 H 1.48499 * 109.46931 * 294.85807 * 23 21 19 26 26 H 1.48497 * 109.47301 * 54.85270 * 23 21 19 27 27 C 1.47077 * 87.88326 * 27.34112 * 18 17 16 28 28 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 30 30 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 31 31 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 32 32 H 1.09000 * 109.41340 * 297.13498 * 9 7 5 33 33 H 1.09003 * 109.40957 * 56.98347 * 9 7 5 34 34 H 1.08999 * 109.47939 * 182.97580 * 10 9 7 35 35 H 1.09004 * 109.47711 * 302.99080 * 10 9 7 36 36 H 1.08996 * 109.56919 * 63.25387 * 11 10 9 37 37 H 1.08996 * 109.57449 * 183.49859 * 11 10 9 38 38 H 1.08990 * 117.50748 * 359.72721 * 13 12 11 39 39 H 1.09001 * 117.50199 * 144.78138 * 13 12 11 40 40 H 1.09003 * 117.50266 * 215.11268 * 14 12 11 41 41 H 1.08996 * 117.50156 * 0.12359 * 14 12 11 42 42 H 1.08997 * 109.57176 * 186.24465 * 15 12 11 43 43 H 1.09002 * 109.56811 * 65.88017 * 15 12 11 44 44 H 1.09009 * 113.27968 * 166.93604 * 16 2 1 45 45 H 1.08997 * 113.46804 * 332.73869 * 17 16 2 46 46 H 1.09001 * 113.46644 * 202.30220 * 17 16 2 47 47 H 0.97003 * 120.00032 * 357.02883 * 22 21 19 48 48 H 1.09000 * 113.46243 * 87.44347 * 27 18 17 49 49 H 1.08997 * 113.46338 * 217.88020 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6489 -0.7288 -3.5876 8 1 1.9761 -1.5506 -3.8325 9 6 4.0510 -1.2795 -3.3224 10 6 4.5384 -2.0657 -4.5402 11 6 4.6511 -1.1245 -5.7435 12 6 3.2930 -0.4572 -5.9797 13 6 2.3229 -1.1425 -6.9417 14 6 3.0286 0.1504 -7.3566 15 6 2.7009 0.2555 -4.7602 16 6 2.0399 -0.7212 1.2493 17 6 1.5897 -0.0846 2.5714 18 7 0.3743 -0.9090 2.4946 19 6 -0.9131 -0.8126 2.9511 20 1 -1.2576 0.1048 3.4051 21 6 -1.7752 -1.8938 2.8304 22 7 -2.9793 -1.8377 3.3588 23 14 -1.2263 -3.4286 1.9178 24 1 -2.2726 -4.4757 2.0364 25 1 -1.0124 -3.1026 0.4850 26 1 0.0424 -3.9275 2.5067 27 6 1.1519 -1.8859 1.7172 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2491 -1.6317 -1.1525 32 1 4.7341 -0.4527 -3.1279 33 1 4.0232 -1.9383 -2.4545 34 1 5.5150 -2.4996 -4.3256 35 1 3.8289 -2.8617 -4.7668 36 1 5.4025 -0.3613 -5.5409 37 1 4.9385 -1.6942 -6.6271 38 1 2.6514 -2.0688 -7.4128 39 1 1.2593 -1.0836 -6.7108 40 1 2.4292 1.0599 -7.3988 41 1 3.8216 0.0750 -8.1006 42 1 1.6932 0.6002 -4.9924 43 1 3.3278 1.1067 -4.4948 44 1 3.1032 -0.9578 1.2064 45 1 1.3943 0.9849 2.4939 46 1 2.2322 -0.3361 3.4152 47 1 -3.2490 -1.0583 3.8695 48 1 1.6788 -2.6123 2.3359 49 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969664535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:49:46 Heat of formation + Delta-G solvation = 33.317654 kcal Electronic energy + Delta-G solvation = -26295.260950 eV Core-core repulsion = 22838.419316 eV Total energy + Delta-G solvation = -3456.841634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.48854 -39.44882 -38.36406 -35.02469 -34.55937 -32.38935 -31.47318 -29.72239 -28.00365 -27.64462 -25.43543 -24.56470 -23.35493 -22.78270 -21.87759 -21.04634 -19.94529 -18.91689 -18.81576 -17.47082 -16.86814 -16.04351 -15.64626 -15.42593 -15.23251 -15.03964 -14.51610 -14.37441 -13.83261 -13.70156 -13.60715 -13.18425 -13.06163 -12.77212 -12.50730 -12.12474 -11.87111 -11.75549 -11.68968 -11.41835 -11.33790 -11.31043 -11.20400 -11.15293 -10.79777 -10.72422 -10.55274 -10.29928 -10.18119 -10.07002 -9.82492 -9.51435 -9.20172 -9.08216 -8.85821 -8.76206 -7.09668 -6.29591 -3.22087 2.80231 3.28389 3.35407 3.40592 3.54162 3.61603 4.32611 4.39284 4.54980 4.58062 4.62919 4.77110 4.80182 4.85070 4.96073 5.00051 5.05366 5.12421 5.18499 5.33054 5.34232 5.41259 5.47561 5.57264 5.66213 5.67430 5.70322 5.72831 5.85659 5.88558 5.88956 5.92402 5.96515 6.03522 6.14303 6.15526 6.21347 6.24315 6.29380 6.37786 6.50442 6.59223 6.78968 6.96284 7.13162 7.28382 7.72279 8.24740 8.41693 8.98437 9.50992 10.38258 11.21370 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.003323 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.254450 B = 8423.927076 C = 8604.618472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.171 3.829 3 H 0.082 0.918 4 N -0.722 5.722 5 C 0.516 3.484 6 O -0.544 6.544 7 C -0.104 4.104 8 H 0.096 0.904 9 C -0.109 4.109 10 C -0.115 4.115 11 C -0.082 4.082 12 C -0.123 4.123 13 C -0.175 4.175 14 C -0.175 4.175 15 C -0.058 4.058 16 C -0.145 4.145 17 C 0.131 3.869 18 N -0.623 5.623 19 C -0.299 4.299 20 H 0.082 0.918 21 C -0.024 4.024 22 N -0.936 5.936 23 Si 1.069 2.931 24 H -0.297 1.297 25 H -0.292 1.292 26 H -0.288 1.288 27 C 0.098 3.902 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.035 0.965 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.047 0.953 46 H 0.040 0.960 47 H 0.261 0.739 48 H 0.043 0.957 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.494 -0.639 -18.810 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.067 3.933 3 H 0.100 0.900 4 N -0.372 5.372 5 C 0.302 3.698 6 O -0.421 6.421 7 C -0.125 4.125 8 H 0.114 0.886 9 C -0.147 4.147 10 C -0.152 4.152 11 C -0.119 4.119 12 C -0.123 4.123 13 C -0.212 4.212 14 C -0.212 4.212 15 C -0.096 4.096 16 C -0.165 4.165 17 C 0.004 3.996 18 N -0.352 5.352 19 C -0.425 4.425 20 H 0.100 0.900 21 C -0.223 4.223 22 N -0.578 5.578 23 Si 0.902 3.098 24 H -0.224 1.224 25 H -0.220 1.220 26 H -0.215 1.215 27 C -0.028 4.028 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.054 0.946 31 H 0.230 0.770 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.502 -1.247 -19.225 25.366 hybrid contribution 0.562 0.921 0.702 1.288 sum 17.064 -0.326 -18.523 25.187 Atomic orbital electron populations 1.22213 0.93381 1.03205 1.01999 1.20595 0.95382 0.95701 0.81574 0.89956 1.46199 1.66951 1.13958 1.10093 1.20570 0.77451 0.87308 0.84487 1.90683 1.50315 1.16162 1.84965 1.21327 0.98352 0.99437 0.93409 0.88579 1.21485 0.94817 1.00073 0.98358 1.21505 1.01313 0.97963 0.94422 1.21156 0.94565 0.98081 0.98121 1.21512 0.96868 1.02736 0.91146 1.23038 0.98277 0.96382 1.03539 1.22975 1.03400 0.97409 0.97439 1.20909 1.01340 0.96518 0.90853 1.23250 0.98280 0.99564 0.95387 1.22291 0.88377 0.96178 0.92795 1.46050 1.05058 1.20604 1.63446 1.20079 0.83917 1.00508 1.37977 0.90019 1.25658 0.94874 1.00696 1.01093 1.70910 1.19211 1.31654 1.36017 0.83750 0.74390 0.76177 0.75465 1.22434 1.22024 1.21532 1.22859 0.92251 0.93136 0.94533 0.92127 0.89097 0.94600 0.76972 0.91325 0.91341 0.91558 0.91588 0.91461 0.91876 0.88971 0.88810 0.88797 0.88960 0.91181 0.90675 0.90482 0.93503 0.94247 0.92925 0.93902 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.06 37.16 0.30 -2.70 16 2 C 0.17 2.84 2.76 -67.93 -0.19 2.66 16 3 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 4 N -0.72 -9.98 4.95 -53.81 -0.27 -10.25 16 5 C 0.52 7.32 7.12 -10.99 -0.08 7.24 16 6 O -0.54 -9.83 15.62 5.56 0.09 -9.75 16 7 C -0.10 -1.08 2.53 -91.71 -0.23 -1.31 16 8 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 9 C -0.11 -0.91 5.03 -26.79 -0.13 -1.04 16 10 C -0.11 -0.80 5.93 -26.67 -0.16 -0.95 16 11 C -0.08 -0.59 5.67 -26.56 -0.15 -0.74 16 12 C -0.12 -1.03 1.97 -154.53 -0.31 -1.34 16 13 C -0.18 -1.39 9.93 -26.79 -0.27 -1.66 16 14 C -0.18 -1.38 9.99 -26.82 -0.27 -1.64 16 15 C -0.06 -0.62 4.27 -26.56 -0.11 -0.73 16 16 C -0.14 -2.35 4.25 -89.97 -0.38 -2.74 16 17 C 0.13 2.46 7.86 -8.51 -0.07 2.39 16 18 N -0.62 -14.50 2.09 -184.59 -0.39 -14.89 16 19 C -0.30 -8.31 9.92 -15.06 -0.15 -8.45 16 20 H 0.08 2.43 8.05 -52.49 -0.42 2.00 16 21 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 22 N -0.94 -29.34 13.71 55.49 0.76 -28.58 16 23 Si 1.07 26.32 24.89 -169.99 -4.23 22.09 16 24 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 25 H -0.29 -6.70 5.95 56.52 0.34 -6.36 16 26 H -0.29 -6.61 6.22 56.52 0.35 -6.26 16 27 C 0.10 1.93 4.68 -8.36 -0.04 1.89 16 28 H 0.06 1.31 5.50 -51.93 -0.29 1.03 16 29 H 0.09 2.05 5.93 -51.93 -0.31 1.74 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.40 4.54 7.98 -40.82 -0.33 4.22 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.51 7.47 -51.93 -0.39 0.13 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.41 8.10 -51.93 -0.42 -0.02 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 43 H 0.07 0.88 8.02 -51.93 -0.42 0.46 16 44 H 0.08 1.04 8.14 -51.92 -0.42 0.61 16 45 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 48 H 0.04 0.84 7.61 -51.93 -0.40 0.44 16 49 H 0.06 1.12 3.47 -51.93 -0.18 0.94 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -32.33 368.34 -9.53 -41.86 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.72 Total: 3.91 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -2.33 Total: -9.94 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.11 Total: -53.71 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -4.23 Total: 22.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.33 -9.53 -41.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969664535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.182 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds