Wall clock time and date at job start Fri Apr 10 2020 21:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.29440 * 117.96216 * 2 1 4 4 C 1.50552 * 124.15572 * 180.38924 * 3 2 1 5 5 C 1.53019 * 109.89028 * 342.99718 * 4 3 2 6 6 C 1.53005 * 109.64317 * 169.16348 * 5 4 3 7 7 C 1.50707 * 109.64121 * 289.57975 * 5 4 3 8 8 O 1.21281 * 119.99990 * 357.72331 * 7 5 4 9 9 N 1.34780 * 119.99820 * 177.71962 * 7 5 4 10 10 C 1.47422 * 125.64588 * 174.50609 * 9 7 5 11 11 C 1.55121 * 104.94249 * 203.96904 * 10 9 7 12 12 H 1.08997 * 110.93695 * 81.21096 * 11 10 9 13 13 C 1.52996 * 111.16395 * 205.13112 * 11 10 9 14 14 C 1.55160 * 101.48686 * 323.22394 * 11 10 9 15 15 H 1.09003 * 110.72036 * 276.83407 * 14 11 10 16 16 N 1.46495 * 110.72118 * 153.73558 * 14 11 10 17 17 C 1.36939 * 119.99764 * 157.44186 * 16 14 11 18 18 H 1.07998 * 119.99876 * 359.97438 * 17 16 14 19 19 C 1.38812 * 119.99771 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00047 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99978 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47137 * 269.99699 * 21 19 17 23 23 H 1.48499 * 109.47460 * 30.00038 * 21 19 17 24 24 H 1.48510 * 109.47161 * 149.99778 * 21 19 17 25 25 C 1.47022 * 125.64815 * 354.46575 * 9 7 5 26 26 C 1.53390 * 108.61615 * 49.37073 * 5 4 3 27 27 C 1.50066 * 117.95889 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47073 * 270.02633 * 1 2 3 29 29 H 1.09006 * 109.46310 * 30.02353 * 1 2 3 30 30 H 1.08993 * 109.47205 * 150.02184 * 1 2 3 31 31 H 1.07994 * 117.96678 * 0.46409 * 3 2 1 32 32 H 1.09003 * 109.62497 * 222.78173 * 4 3 2 33 33 H 1.09000 * 109.34767 * 103.04065 * 4 3 2 34 34 H 1.08995 * 109.46979 * 188.20268 * 6 5 4 35 35 H 1.09002 * 109.46708 * 308.20248 * 6 5 4 36 36 H 1.09001 * 109.46862 * 68.19667 * 6 5 4 37 37 H 1.08998 * 110.36533 * 322.93149 * 10 9 7 38 38 H 1.08997 * 110.36820 * 85.14633 * 10 9 7 39 39 H 1.09004 * 109.47517 * 172.16732 * 13 11 10 40 40 H 1.09004 * 109.47360 * 292.17162 * 13 11 10 41 41 H 1.08999 * 109.47396 * 52.16819 * 13 11 10 42 42 H 0.96993 * 120.00257 * 337.43571 * 16 14 11 43 43 H 0.97001 * 120.00380 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.88143 * 59.56374 * 25 9 7 45 45 H 1.08997 * 109.88312 * 298.39119 * 25 9 7 46 46 H 1.08998 * 109.64152 * 52.14251 * 26 5 4 47 47 H 1.09004 * 109.64529 * 172.56273 * 26 5 4 48 48 H 1.09005 * 109.35671 * 42.68750 * 27 2 1 49 49 H 1.08998 * 109.35891 * 283.10220 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6107 1.3057 -0.0085 5 6 4.2792 -0.0074 0.4041 6 6 5.7835 0.0751 0.1369 7 6 4.0383 -0.2597 1.8703 8 8 3.4297 0.5531 2.5334 9 7 4.4992 -1.3886 2.4444 10 6 4.4360 -1.7090 3.8820 11 6 5.5799 -2.7306 4.1148 12 1 6.5393 -2.2239 4.2188 13 6 5.2934 -3.6129 5.3314 14 6 5.5272 -3.5577 2.8031 15 1 4.7643 -4.3336 2.8669 16 7 6.8367 -4.1441 2.5072 17 6 6.9263 -5.2474 1.7010 18 1 6.0317 -5.6855 1.2839 19 6 8.1671 -5.8027 1.4201 20 7 8.2533 -6.8635 0.6458 21 14 9.7144 -5.0453 2.1424 22 1 10.2419 -4.0150 1.2121 23 1 9.3942 -4.4156 3.4485 24 1 10.7375 -6.1034 2.3407 25 6 5.1476 -2.5048 1.7406 26 6 3.6705 -1.1475 -0.4221 27 6 2.2106 -1.3255 0.0006 28 1 -0.3633 0.0005 1.0276 29 1 -0.3632 0.8899 -0.5143 30 1 -0.3633 -0.8901 -0.5135 31 1 1.5090 2.0378 0.0077 32 1 3.8975 2.0922 0.6897 33 1 3.9387 1.5786 -1.0115 34 1 6.2345 -0.9048 0.2930 35 1 5.9528 0.3933 -0.8918 36 1 6.2347 0.7957 0.8190 37 1 4.6004 -0.8115 4.4782 38 1 3.4733 -2.1566 4.1289 39 1 6.0386 -4.4064 5.3885 40 1 5.3366 -3.0081 6.2372 41 1 4.3008 -4.0529 5.2355 42 1 7.6401 -3.7508 2.8821 43 1 9.1204 -7.2518 0.4497 44 1 6.0445 -2.1514 1.2320 45 1 4.4563 -2.9394 1.0186 46 1 3.7172 -0.8973 -1.4819 47 1 4.2234 -2.0688 -0.2384 48 1 1.7123 -1.9994 -0.6964 49 1 2.1741 -1.7535 1.0024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082936057.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:52:34 Heat of formation + Delta-G solvation = -11.916843 kcal Electronic energy + Delta-G solvation = -27145.405668 eV Core-core repulsion = 23686.602519 eV Total energy + Delta-G solvation = -3458.803149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.87313 -38.47761 -37.00916 -34.38493 -34.02819 -32.40889 -31.10757 -30.71061 -28.84645 -27.96774 -26.40415 -24.81218 -24.05219 -23.25156 -22.42981 -20.80399 -20.20957 -19.27870 -17.59746 -17.41516 -16.21841 -15.93649 -15.54756 -14.98220 -14.75439 -14.38476 -14.28249 -13.93198 -13.61535 -13.38039 -13.33455 -13.17177 -12.80034 -12.73716 -12.54521 -12.39541 -12.32477 -12.19194 -11.97089 -11.91272 -11.70027 -11.51223 -11.43998 -11.13908 -11.10174 -10.81231 -10.60205 -10.39743 -10.37473 -10.09842 -9.99543 -9.69459 -9.44549 -9.03127 -8.64722 -8.28869 -7.43087 -5.88253 -3.26168 2.34621 2.88842 3.22543 3.29829 3.32645 3.39061 4.47168 4.48978 4.55865 4.66707 4.82492 4.98995 5.01770 5.06119 5.13173 5.25179 5.32626 5.39819 5.42838 5.48322 5.53792 5.56378 5.60123 5.66313 5.70533 5.73666 5.76267 5.78620 5.85733 5.85986 5.89754 5.93425 5.99791 6.07642 6.08438 6.16527 6.18793 6.21524 6.32125 6.46237 6.46916 6.55580 6.71440 6.76778 7.08808 7.80206 7.86884 8.30401 8.42409 9.07045 9.79406 9.97708 11.29379 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.017280 B = 0.004326 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.963538 B = 6471.478632 C = 6936.892107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.131 4.131 3 C -0.142 4.142 4 C -0.063 4.063 5 C -0.075 4.075 6 C -0.150 4.150 7 C 0.543 3.457 8 O -0.547 6.547 9 N -0.613 5.613 10 C 0.115 3.885 11 C -0.117 4.117 12 H 0.080 0.920 13 C -0.134 4.134 14 C 0.181 3.819 15 H 0.075 0.925 16 N -0.736 5.736 17 C -0.252 4.252 18 H 0.092 0.908 19 C 0.011 3.989 20 N -0.929 5.929 21 Si 0.881 3.119 22 H -0.283 1.283 23 H -0.276 1.276 24 H -0.290 1.290 25 C 0.064 3.936 26 C -0.121 4.121 27 C -0.085 4.085 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.364 0.636 43 H 0.261 0.739 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.073 0.927 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 13.614 0.506 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.131 4.131 3 C -0.160 4.160 4 C -0.100 4.100 5 C -0.078 4.078 6 C -0.207 4.207 7 C 0.332 3.668 8 O -0.424 6.424 9 N -0.346 5.346 10 C -0.008 4.008 11 C -0.137 4.137 12 H 0.098 0.902 13 C -0.192 4.192 14 C 0.069 3.931 15 H 0.093 0.907 16 N -0.377 5.377 17 C -0.382 4.382 18 H 0.110 0.890 19 C -0.185 4.185 20 N -0.575 5.575 21 Si 0.711 3.289 22 H -0.210 1.210 23 H -0.202 1.202 24 H -0.217 1.217 25 C -0.062 4.062 26 C -0.158 4.158 27 C -0.122 4.122 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.197 0.803 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.107 0.893 48 H 0.092 0.908 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.674 13.876 0.662 17.519 hybrid contribution 1.200 0.448 0.412 1.346 sum -9.474 14.325 1.075 17.207 Atomic orbital electron populations 1.20894 0.92857 1.01853 1.01753 1.20751 0.95504 0.94889 1.01983 1.21795 0.95720 0.96960 1.01509 1.20387 0.92557 0.95929 1.01164 1.20808 0.97318 0.97526 0.92110 1.22011 0.92867 1.03632 1.02200 1.20060 0.77799 0.79880 0.89094 1.90645 1.40977 1.45844 1.64977 1.48451 1.59350 1.18125 1.08724 1.22232 0.98419 0.98249 0.81885 1.22697 0.98164 0.96181 0.96668 0.90180 1.21615 1.02165 0.99434 0.95981 1.21240 0.89675 0.92418 0.89724 0.90749 1.42709 1.01906 1.33822 1.59311 1.19060 0.94834 1.02852 1.21444 0.88995 1.24658 0.97130 0.97385 0.99339 1.69692 1.24091 1.23287 1.40474 0.86612 0.84480 0.78687 0.79100 1.20983 1.20239 1.21654 1.23616 0.97429 0.87494 0.97620 1.21967 0.95658 0.98587 0.99634 1.20407 0.94859 0.94987 1.01905 0.91960 0.92294 0.92227 0.88228 0.90383 0.90518 0.90497 0.91462 0.92394 0.91188 0.91759 0.91457 0.93123 0.92553 0.80288 0.92898 0.90266 0.91128 0.90733 0.89261 0.90822 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.87 36.01 0.36 -0.86 16 2 C -0.13 -1.63 5.65 -100.94 -0.57 -2.20 16 3 C -0.14 -1.78 8.55 -35.67 -0.31 -2.08 16 4 C -0.06 -0.77 4.58 -27.95 -0.13 -0.90 16 5 C -0.07 -0.97 0.50 -155.44 -0.08 -1.05 16 6 C -0.15 -1.83 8.28 37.16 0.31 -1.52 16 7 C 0.54 8.50 4.82 -10.98 -0.05 8.45 16 8 O -0.55 -10.05 15.54 5.56 0.09 -9.97 16 9 N -0.61 -9.27 3.32 -170.39 -0.57 -9.83 16 10 C 0.12 1.64 6.37 -2.42 -0.02 1.62 16 11 C -0.12 -1.70 3.27 -88.36 -0.29 -1.99 16 12 H 0.08 1.20 8.00 -51.93 -0.42 0.78 16 13 C -0.13 -1.75 9.32 37.16 0.35 -1.41 16 14 C 0.18 3.11 3.06 -66.10 -0.20 2.91 16 15 H 0.07 1.33 8.00 -51.93 -0.42 0.91 16 16 N -0.74 -15.64 4.97 -51.65 -0.26 -15.89 16 17 C -0.25 -6.51 10.45 -15.06 -0.16 -6.67 16 18 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 19 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 20 N -0.93 -27.67 13.97 55.49 0.78 -26.90 16 21 Si 0.88 20.84 27.73 -169.99 -4.71 16.13 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 25 C 0.06 1.00 4.96 -3.06 -0.02 0.98 16 26 C -0.12 -1.50 4.46 -26.52 -0.12 -1.61 16 27 C -0.08 -1.06 5.26 -28.18 -0.15 -1.20 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 30 H 0.06 0.56 8.03 -51.93 -0.42 0.14 16 31 H 0.10 1.15 7.81 -52.49 -0.41 0.74 16 32 H 0.08 1.02 7.73 -51.93 -0.40 0.62 16 33 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 34 H 0.08 1.02 5.04 -51.93 -0.26 0.76 16 35 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 36 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 37 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 38 H 0.06 0.88 7.99 -51.93 -0.41 0.46 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 42 H 0.36 7.72 5.60 -40.82 -0.23 7.49 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.08 1.31 5.27 -51.93 -0.27 1.04 16 45 H 0.07 1.09 5.77 -51.93 -0.30 0.79 16 46 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 47 H 0.09 1.17 4.66 -51.93 -0.24 0.92 16 48 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 49 H 0.07 1.00 7.41 -51.93 -0.38 0.61 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -30.09 367.78 -8.67 -38.76 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -8.37 Total: 9.48 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -1.17 Total: -7.32 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.05 Total: -52.62 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.71 Total: 16.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.09 -8.67 -38.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082936057.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.842 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds