Wall clock time and date at job start Fri Apr 10 2020 21:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47083 * 2 1 4 4 C 1.50694 * 109.47290 * 240.00145 * 2 1 3 5 5 O 1.21285 * 120.00076 * 239.99865 * 4 2 1 6 6 N 1.34774 * 120.00303 * 59.99533 * 4 2 1 7 7 C 1.46499 * 120.00268 * 180.02562 * 6 4 2 8 8 H 1.09003 * 110.56266 * 32.10047 * 7 6 4 9 9 C 1.54859 * 110.62679 * 269.02776 * 7 6 4 10 10 C 1.55838 * 103.44583 * 241.50917 * 9 7 6 11 11 H 1.09008 * 116.12953 * 159.14863 * 10 9 7 12 12 C 1.55846 * 105.06656 * 288.17446 * 10 9 7 13 13 C 1.54853 * 103.58572 * 71.74551 * 12 10 9 14 14 C 1.55843 * 110.62921 * 155.00443 * 7 6 4 15 15 H 1.08999 * 115.55949 * 319.67742 * 14 7 6 16 16 N 1.50239 * 101.05221 * 32.94002 * 10 9 7 17 17 C 1.36936 * 130.84246 * 126.05361 * 16 10 9 18 18 H 1.07997 * 120.00155 * 179.97438 * 17 16 10 19 19 C 1.38808 * 119.99686 * 359.97318 * 17 16 10 20 20 N 1.31623 * 120.00134 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00196 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46835 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47211 * 119.99564 * 21 19 17 24 24 H 1.48499 * 109.47426 * 240.00291 * 21 19 17 25 25 C 1.53000 * 109.47332 * 119.99719 * 2 1 3 26 26 C 1.54262 * 110.03215 * 297.17174 * 25 2 1 27 27 C 1.54895 * 104.19710 * 217.10225 * 26 25 2 28 28 C 1.54895 * 102.74340 * 37.94201 * 27 26 25 29 29 C 1.53872 * 110.03486 * 180.02562 * 25 2 1 30 30 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47535 * 299.99869 * 1 2 3 32 32 H 1.09003 * 109.47309 * 60.00286 * 1 2 3 33 33 H 0.97003 * 119.99701 * 0.02562 * 6 4 2 34 34 H 1.09005 * 110.62716 * 123.01732 * 9 7 6 35 35 H 1.08998 * 110.62668 * 0.02562 * 9 7 6 36 36 H 1.09002 * 110.62915 * 190.31567 * 12 10 9 37 37 H 1.08994 * 110.62469 * 313.17551 * 12 10 9 38 38 H 1.08998 * 110.62783 * 118.56957 * 13 12 10 39 39 H 1.08998 * 110.62556 * 241.59208 * 13 12 10 40 40 H 0.97003 * 120.00038 * 179.97438 * 20 19 17 41 41 H 1.08999 * 110.01167 * 58.60821 * 25 2 1 42 42 H 1.09003 * 110.48611 * 335.77922 * 26 25 2 43 43 H 1.08997 * 110.48968 * 98.42294 * 26 25 2 44 44 H 1.09000 * 110.75390 * 279.62915 * 27 26 25 45 45 H 1.08998 * 110.75479 * 156.25215 * 27 26 25 46 46 H 1.09003 * 110.48396 * 203.38168 * 28 27 26 47 47 H 1.08996 * 110.59846 * 80.79747 * 28 27 26 48 48 H 1.09003 * 110.03167 * 238.57449 * 29 25 2 49 49 H 1.08998 * 110.03338 * 359.94785 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2500 -2.4545 7 6 2.1946 -0.9409 -3.6507 8 1 2.2866 -2.0108 -3.4640 9 6 3.5482 -0.3455 -4.1106 10 6 3.2381 0.1999 -5.5371 11 1 3.9192 0.9606 -5.9188 12 6 3.0780 -1.0677 -6.4295 13 6 1.7258 -1.6671 -5.9707 14 6 1.2512 -0.6741 -4.8621 15 1 0.1846 -0.6795 -4.6376 16 7 1.8054 0.6234 -5.3785 17 6 1.1931 1.8225 -5.6282 18 1 0.1341 1.9357 -5.4491 19 6 1.9336 2.8924 -6.1116 20 7 3.2241 2.7543 -6.3303 21 14 1.0986 4.5285 -6.4516 22 1 -0.3464 4.4239 -6.1253 23 1 1.7196 5.5849 -5.6130 24 1 1.2586 4.8772 -7.8862 25 6 2.0400 -0.7212 1.2493 26 6 1.5922 0.0361 2.5164 27 6 2.7934 -0.1001 3.4848 28 6 4.0122 0.0244 2.5370 29 6 3.5786 -0.7282 1.2626 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.1493 0.5389 -2.5435 34 1 4.3137 -1.1203 -4.1537 35 1 3.8566 0.4635 -3.4484 36 1 3.0383 -0.7928 -7.4835 37 1 3.8910 -1.7705 -6.2476 38 1 1.0156 -1.6894 -6.7972 39 1 1.8687 -2.6660 -5.5587 40 1 3.7415 3.5019 -6.6684 41 1 1.6614 -1.7431 1.2708 42 1 1.4038 1.0850 2.2874 43 1 0.7032 -0.4276 2.9438 44 1 2.7845 -1.0726 3.9769 45 1 2.7911 0.7057 4.2188 46 1 4.8893 -0.4480 2.9794 47 1 4.2169 1.0708 2.3109 48 1 3.9471 -1.7536 1.2912 49 1 3.9621 -0.2186 0.3787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098190708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:51:33 Heat of formation + Delta-G solvation = -34.599634 kcal Electronic energy + Delta-G solvation = -26731.867183 eV Core-core repulsion = 23272.080434 eV Total energy + Delta-G solvation = -3459.786749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47936 -40.37506 -38.56499 -35.28497 -34.55193 -33.97944 -30.97701 -30.41847 -29.62445 -29.37337 -28.28291 -26.16182 -25.03578 -22.78013 -21.55975 -21.42941 -21.18930 -20.53769 -20.06700 -18.83565 -17.93658 -17.34946 -16.78957 -16.56651 -15.96500 -15.93285 -15.56365 -15.48970 -14.99981 -14.40548 -14.21243 -14.06980 -13.80328 -13.67231 -13.55226 -13.09704 -12.90892 -12.87094 -12.77436 -12.70134 -12.44515 -12.09527 -11.95980 -11.93821 -11.87595 -11.86172 -11.84895 -11.68750 -11.54106 -11.43640 -11.26406 -11.14686 -10.95269 -10.89229 -10.44325 -9.86887 -8.86461 -7.75209 -5.15212 1.49267 1.50326 1.59207 1.77271 2.37900 2.50994 3.38355 3.45266 3.59971 3.72679 3.77289 3.99160 4.04896 4.08926 4.23123 4.26318 4.27636 4.45606 4.47081 4.49956 4.61062 4.63146 4.70371 4.73603 4.76477 4.82824 4.84647 4.86929 4.90137 4.94494 5.01223 5.08955 5.13457 5.16218 5.16671 5.20309 5.25959 5.30512 5.37737 5.45565 5.50546 5.52671 5.56665 5.62325 5.75815 5.90097 6.27182 6.73156 7.06433 7.38608 7.73232 8.59201 9.32365 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.015472 B = 0.004069 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.244297 B = 6879.861686 C = 7689.093021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 H 0.098 0.902 4 C 0.510 3.490 5 O -0.580 6.580 6 N -0.707 5.707 7 C 0.140 3.860 8 H 0.083 0.917 9 C -0.131 4.131 10 C 0.140 3.860 11 H 0.115 0.885 12 C -0.132 4.132 13 C -0.119 4.119 14 C 0.128 3.872 15 H 0.102 0.898 16 N -0.610 5.610 17 C -0.212 4.212 18 H 0.087 0.913 19 C -0.067 4.067 20 N -0.949 5.949 21 Si 0.973 3.027 22 H -0.265 1.265 23 H -0.298 1.298 24 H -0.300 1.300 25 C -0.066 4.066 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.128 4.128 29 C -0.109 4.109 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.404 0.596 34 H 0.061 0.939 35 H 0.032 0.968 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.244 0.756 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.048 0.952 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.906 -6.417 15.634 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.116 0.884 4 C 0.297 3.703 5 O -0.461 6.461 6 N -0.356 5.356 7 C 0.033 3.967 8 H 0.100 0.900 9 C -0.172 4.172 10 C 0.033 3.967 11 H 0.133 0.867 12 C -0.172 4.172 13 C -0.159 4.159 14 C 0.020 3.980 15 H 0.120 0.880 16 N -0.331 5.331 17 C -0.341 4.341 18 H 0.104 0.896 19 C -0.260 4.260 20 N -0.599 5.599 21 Si 0.804 3.196 22 H -0.189 1.189 23 H -0.226 1.226 24 H -0.228 1.228 25 C -0.085 4.085 26 C -0.151 4.151 27 C -0.157 4.157 28 C -0.165 4.165 29 C -0.146 4.146 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.463 -6.814 15.603 17.601 hybrid contribution 0.035 1.314 -0.913 1.601 sum -4.428 -5.499 14.690 16.298 Atomic orbital electron populations 1.21774 0.91192 1.02796 1.03789 1.21502 0.98825 1.00288 0.91560 0.88408 1.21232 0.79353 0.84276 0.85397 1.90629 1.39712 1.28400 1.87335 1.46040 1.52720 1.31587 1.05244 1.22370 0.94274 0.95360 0.84656 0.89954 1.23284 0.96642 0.98371 0.98884 1.23584 0.87752 0.93537 0.91831 0.86749 1.22961 0.97380 0.97907 0.98928 1.22892 0.96808 0.97892 0.98302 1.23427 0.96219 0.86404 0.91923 0.87997 1.46718 1.05102 1.06942 1.74333 1.19397 0.93009 0.86918 1.34773 0.89572 1.25424 0.96319 1.01157 1.03082 1.69732 1.06642 1.30655 1.52852 0.85062 0.78121 0.79979 0.76483 1.18885 1.22571 1.22789 1.21537 0.94873 0.98983 0.93152 1.22458 0.98474 1.00572 0.93615 1.22486 0.93782 1.02256 0.97221 1.22419 0.98683 1.00093 0.95325 1.22039 0.95681 0.99687 0.97241 0.92397 0.89192 0.92011 0.76098 0.92002 0.94943 0.94336 0.91318 0.92147 0.90168 0.94581 0.91703 0.90651 0.90126 0.91223 0.90220 0.91608 0.91856 0.93334 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.89 71.98 0.64 -1.94 16 2 C -0.10 -2.41 2.02 -11.54 -0.02 -2.43 16 3 H 0.10 2.30 8.12 -2.39 -0.02 2.28 16 4 C 0.51 16.44 6.54 87.66 0.57 17.01 16 5 O -0.58 -22.32 14.31 -3.05 -0.04 -22.36 16 6 N -0.71 -23.63 4.97 -434.91 -2.16 -25.79 16 7 C 0.14 5.12 2.80 46.61 0.13 5.25 16 8 H 0.08 2.99 7.23 -2.39 -0.02 2.97 16 9 C -0.13 -5.45 6.23 32.21 0.20 -5.25 16 10 C 0.14 6.46 4.72 46.23 0.22 6.68 16 11 H 0.12 6.27 5.52 -2.38 -0.01 6.26 16 12 C -0.13 -5.18 6.43 32.21 0.21 -4.97 16 13 C -0.12 -4.09 6.47 32.35 0.21 -3.88 16 14 C 0.13 4.75 5.07 46.36 0.23 4.98 16 15 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 16 N -0.61 -28.55 2.99 -614.54 -1.84 -30.39 16 17 C -0.21 -10.93 10.59 84.03 0.89 -10.04 16 18 H 0.09 4.20 7.83 -2.91 -0.02 4.17 16 19 C -0.07 -3.63 5.50 84.86 0.47 -3.17 16 20 N -0.95 -54.66 10.46 21.65 0.23 -54.44 16 21 Si 0.97 44.06 29.55 68.60 2.03 46.09 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 25 C -0.07 -1.50 2.12 -10.07 -0.02 -1.53 16 26 C -0.11 -1.84 5.32 31.67 0.17 -1.67 16 27 C -0.12 -1.89 6.91 31.89 0.22 -1.67 16 28 C -0.13 -2.55 6.83 31.65 0.22 -2.33 16 29 C -0.11 -2.83 5.08 31.30 0.16 -2.67 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.27 7.27 -2.39 -0.02 1.25 16 32 H 0.06 1.17 7.56 -2.39 -0.02 1.15 16 33 H 0.40 13.13 8.08 -92.71 -0.75 12.38 16 34 H 0.06 2.40 7.82 -2.38 -0.02 2.38 16 35 H 0.03 1.48 7.98 -2.39 -0.02 1.46 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 2.37 7.82 -2.39 -0.02 2.35 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.08 2.32 7.82 -2.39 -0.02 2.31 16 40 H 0.24 13.88 8.31 -92.71 -0.77 13.11 16 41 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 42 H 0.07 1.13 7.75 -2.39 -0.02 1.11 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.03 1.09 6.91 -2.39 -0.02 1.08 16 Total: -1.00 -63.12 370.66 2.87 -60.24 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: 0.17 Total: 34.27 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 4.49 Total: -7.63 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -3.77 Total: -110.62 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.04 Total: -22.36 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -63.12 2.87 -60.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098190708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.644 kcal (2) G-P(sol) polarization free energy of solvation -63.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds