Wall clock time and date at job start Fri Apr 10 2020 21:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46696 * 2 1 4 4 N 1.46896 * 109.47258 * 240.00659 * 2 1 3 5 5 C 1.46906 * 111.00274 * 60.99540 * 4 2 1 6 6 C 1.50701 * 109.46796 * 78.89123 * 5 4 2 7 7 H 1.07995 * 120.00140 * 4.17988 * 6 5 4 8 8 C 1.37880 * 119.99742 * 184.17999 * 6 5 4 9 9 N 1.31521 * 119.99866 * 0.02562 * 8 6 5 10 10 Si 1.86789 * 120.00020 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47223 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47085 * 119.99876 * 10 8 6 13 13 H 1.48499 * 109.47381 * 240.00029 * 10 8 6 14 14 C 1.46902 * 110.99578 * 297.04436 * 4 2 1 15 15 H 1.09000 * 109.47577 * 59.64717 * 14 4 2 16 16 C 1.50706 * 109.46915 * 179.64061 * 14 4 2 17 17 N 1.33245 * 125.52397 * 44.69610 * 16 14 4 18 18 C 1.30833 * 109.82456 * 179.85100 * 17 16 14 19 19 N 1.34422 * 108.08043 * 0.40354 * 18 17 16 20 20 H 0.97004 * 126.82666 * 179.78982 * 19 18 17 21 21 N 1.30712 * 125.52637 * 224.99273 * 16 14 4 22 22 C 1.52998 * 109.47367 * 299.63913 * 14 4 2 23 23 C 1.52998 * 109.47160 * 302.38125 * 22 14 4 24 24 C 1.53000 * 109.46878 * 179.97438 * 23 22 14 25 25 C 1.52991 * 109.47593 * 60.00089 * 24 23 22 26 26 C 1.53012 * 109.46753 * 299.99920 * 25 24 23 27 27 C 1.52995 * 109.47208 * 60.00003 * 26 25 24 28 28 H 1.09004 * 109.47307 * 55.05455 * 1 2 3 29 29 H 1.08999 * 109.47005 * 175.05649 * 1 2 3 30 30 H 1.09005 * 109.47161 * 295.05485 * 1 2 3 31 31 H 1.08994 * 109.47132 * 120.00235 * 2 1 3 32 32 H 1.09000 * 109.46725 * 67.19937 * 3 2 1 33 33 H 1.09002 * 109.46960 * 187.19339 * 3 2 1 34 34 H 1.09000 * 109.47372 * 307.19797 * 3 2 1 35 35 H 1.09000 * 109.47080 * 198.89389 * 5 4 2 36 36 H 1.08996 * 109.47061 * 318.89207 * 5 4 2 37 37 H 0.96994 * 119.99575 * 180.02562 * 9 8 6 38 38 H 1.08001 * 125.95680 * 180.19097 * 18 17 16 39 39 H 1.09008 * 109.46327 * 62.37666 * 22 14 4 40 40 H 1.08997 * 109.47154 * 299.99548 * 23 22 14 41 41 H 1.08998 * 109.47583 * 59.99671 * 23 22 14 42 42 H 1.09002 * 109.47212 * 299.99140 * 24 23 22 43 43 H 1.09007 * 109.46925 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.47666 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.47617 * 59.99299 * 25 24 23 46 46 H 1.09000 * 109.46783 * 299.99539 * 26 25 24 47 47 H 1.08997 * 109.47057 * 180.02562 * 26 25 24 48 48 H 1.08997 * 109.47075 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.47198 * 59.99793 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6923 -1.1995 5 6 1.5683 -0.0125 -2.4210 6 6 2.4335 1.1955 -2.6725 7 1 3.2795 1.3966 -2.0320 8 6 2.1450 2.0440 -3.7203 9 7 1.1145 1.7993 -4.5000 10 14 3.2170 3.5416 -4.0317 11 1 4.3036 3.5915 -3.0207 12 1 3.8095 3.4524 -5.3904 13 1 2.3905 4.7714 -3.9318 14 6 1.6072 -2.1023 -1.1987 15 1 0.5192 -2.1626 -1.1738 16 6 2.1192 -2.7761 -2.4457 17 7 3.3470 -2.6472 -2.9470 18 6 3.4608 -3.3679 -4.0329 19 7 2.2828 -3.9759 -4.2555 20 1 2.0656 -4.5720 -4.9893 21 7 1.4290 -3.5774 -3.2139 22 6 2.1852 -2.8021 0.0330 23 6 3.7092 -2.6662 0.0286 24 6 4.2870 -3.3654 1.2607 25 6 3.9071 -4.8471 1.2314 26 6 2.3831 -4.9830 1.2357 27 6 1.8052 -4.2838 0.0037 28 1 -0.3634 0.5887 -0.8424 29 1 -0.3633 -1.0238 -0.0886 30 1 -0.3634 0.4352 0.9310 31 1 1.8933 -0.5138 0.8899 32 1 1.7855 1.9178 0.9474 33 1 3.1223 1.4454 -0.1287 34 1 1.5753 1.9923 -0.8186 35 1 1.6441 -0.6962 -3.2665 36 1 0.5317 0.3019 -2.2999 37 1 0.9118 2.3960 -5.2373 38 1 4.3458 -3.4560 -4.6457 39 1 1.7820 -2.3416 0.9351 40 1 4.1124 -3.1265 -0.8733 41 1 3.9799 -1.6106 0.0500 42 1 3.8839 -2.9047 2.1625 43 1 5.3728 -3.2690 1.2573 44 1 4.3184 -5.3453 2.1093 45 1 4.3103 -5.3079 0.3295 46 1 1.9799 -4.5223 2.1376 47 1 2.1123 -6.0386 1.2153 48 1 0.7195 -4.3802 0.0071 49 1 2.2084 -4.7445 -0.8981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602450446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:50:21 Heat of formation + Delta-G solvation = 82.327918 kcal Electronic energy + Delta-G solvation = -27836.590136 eV Core-core repulsion = 24414.166497 eV Total energy + Delta-G solvation = -3422.423638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.212 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.70361 -39.00648 -37.04316 -33.23107 -32.47285 -31.43188 -30.48317 -30.29407 -29.81416 -27.38574 -26.00015 -24.67326 -22.72447 -22.57293 -21.76112 -21.37772 -19.88662 -19.31395 -18.24743 -17.43788 -16.33470 -15.55127 -15.27157 -15.09119 -14.54020 -14.34735 -14.07837 -13.94468 -13.71494 -13.33405 -13.19055 -12.70599 -12.26513 -12.02655 -11.87557 -11.69767 -11.60193 -11.43096 -11.23342 -11.13563 -10.96734 -10.80182 -10.77246 -10.65281 -10.59580 -10.25874 -10.16659 -10.05289 -9.85503 -9.69237 -9.37885 -9.33853 -9.28072 -9.01604 -8.96041 -8.26543 -7.06534 -5.89314 -3.84408 2.09593 3.09111 3.36787 3.44644 3.49543 3.51149 4.49703 4.57401 4.75324 4.92241 5.03196 5.06843 5.25629 5.44957 5.48452 5.55035 5.61387 5.66362 5.71921 5.81621 5.83310 5.86677 5.90166 5.91617 6.06972 6.11785 6.17027 6.22302 6.34202 6.40400 6.45667 6.47553 6.56353 6.64970 6.67373 6.71655 6.78089 6.85303 6.97492 7.05631 7.14326 7.32242 7.45641 7.52261 7.60228 7.98066 8.25389 8.33624 8.62787 8.72717 9.20446 9.73935 11.21252 Molecular weight = 306.21amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.005682 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.962453 B = 4926.590290 C = 5763.334113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.088 3.912 3 C -0.137 4.137 4 N -0.507 5.507 5 C 0.191 3.809 6 C -0.478 4.478 7 H 0.070 0.930 8 C 0.048 3.952 9 N -0.905 5.905 10 Si 0.890 3.110 11 H -0.271 1.271 12 H -0.288 1.288 13 H -0.288 1.288 14 C 0.176 3.824 15 H 0.051 0.949 16 C 0.268 3.732 17 N -0.497 5.497 18 C 0.244 3.756 19 N -0.495 5.495 20 H 0.433 0.567 21 N -0.329 5.329 22 C -0.072 4.072 23 C -0.104 4.104 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.112 4.112 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.021 0.979 36 H 0.002 0.998 37 H 0.256 0.744 38 H 0.213 0.787 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -13.235 7.485 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.020 4.020 3 C -0.194 4.194 4 N -0.232 5.232 5 C 0.066 3.934 6 C -0.517 4.517 7 H 0.088 0.912 8 C -0.151 4.151 9 N -0.546 5.546 10 Si 0.719 3.281 11 H -0.196 1.196 12 H -0.214 1.214 13 H -0.214 1.214 14 C 0.064 3.936 15 H 0.068 0.932 16 C -0.015 4.015 17 N -0.223 5.223 18 C -0.055 4.055 19 N -0.213 5.213 20 H 0.277 0.723 21 N -0.159 5.159 22 C -0.092 4.092 23 C -0.142 4.142 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.150 4.150 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.039 0.961 36 H 0.020 0.980 37 H 0.066 0.934 38 H 0.230 0.770 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.241 -13.079 7.653 15.496 hybrid contribution -0.428 0.367 -1.333 1.447 sum 2.813 -12.711 6.320 14.472 Atomic orbital electron populations 1.22525 0.99179 1.01086 1.01994 1.21546 0.91509 0.96004 0.92987 1.22053 1.02134 0.94884 1.00335 1.62400 1.58836 0.97899 1.04021 1.19804 0.94587 0.93632 0.85342 1.21303 1.11839 1.06698 1.11862 0.91201 1.24964 0.95529 0.98275 0.96376 1.69988 1.28090 1.38141 1.18355 0.86556 0.80638 0.82939 0.78005 1.19578 1.21448 1.21429 1.19877 0.96074 0.90424 0.87199 0.93170 1.23831 0.88013 0.93414 0.96208 1.70519 1.20623 1.21628 1.09540 1.26134 0.91408 0.92030 0.95944 1.48049 1.10009 1.39786 1.23428 0.72254 1.77937 1.16250 1.21238 1.00443 1.21148 0.97460 0.94003 0.96557 1.21496 0.93321 1.02142 0.97204 1.21593 1.00022 0.94917 0.99239 1.21523 0.95778 0.97271 1.00891 1.21487 0.95809 0.99563 0.98349 1.21563 0.99944 0.95650 0.97869 0.91334 0.93590 0.93301 0.91723 0.95343 0.92189 0.89534 0.96138 0.98028 0.93428 0.77026 0.90730 0.90803 0.90044 0.92658 0.92572 0.92905 0.92536 0.92219 0.92769 0.92485 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.37 8.56 37.16 0.32 -3.05 16 2 C 0.09 1.65 2.69 -67.71 -0.18 1.46 16 3 C -0.14 -2.67 7.77 37.16 0.29 -2.39 16 4 N -0.51 -10.57 3.48 -221.52 -0.77 -11.34 16 5 C 0.19 4.90 4.27 -4.97 -0.02 4.88 16 6 C -0.48 -13.05 6.49 -34.44 -0.22 -13.28 16 7 H 0.07 1.91 6.06 -52.49 -0.32 1.59 16 8 C 0.05 1.36 5.46 -17.82 -0.10 1.26 16 9 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 10 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 14 C 0.18 3.29 1.57 -68.86 -0.11 3.19 16 15 H 0.05 0.99 6.26 -51.93 -0.32 0.67 16 16 C 0.27 5.16 3.16 -156.85 -0.50 4.67 16 17 N -0.50 -9.39 9.38 -11.97 -0.11 -9.50 16 18 C 0.24 3.58 13.13 -90.66 -1.19 2.39 16 19 N -0.49 -7.04 7.45 29.53 0.22 -6.82 16 20 H 0.43 4.31 8.96 -182.33 -1.63 2.68 16 21 N -0.33 -6.07 12.77 32.42 0.41 -5.66 16 22 C -0.07 -1.11 1.61 -90.62 -0.15 -1.25 16 23 C -0.10 -1.61 4.70 -26.73 -0.13 -1.74 16 24 C -0.12 -1.52 5.92 -26.74 -0.16 -1.68 16 25 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 26 C -0.11 -1.33 5.92 -26.73 -0.16 -1.49 16 27 C -0.11 -1.56 4.93 -26.73 -0.13 -1.69 16 28 H 0.07 1.41 6.32 -51.93 -0.33 1.08 16 29 H 0.05 0.78 6.23 -51.93 -0.32 0.46 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.09 6.21 -51.93 -0.32 0.76 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 1.22 7.06 -51.93 -0.37 0.85 16 34 H 0.09 1.97 5.99 -51.93 -0.31 1.66 16 35 H 0.02 0.59 6.26 -51.93 -0.33 0.27 16 36 H 0.00 0.06 5.69 -51.93 -0.30 -0.24 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.21 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.07 1.11 6.48 -51.92 -0.34 0.77 16 40 H 0.07 1.26 6.11 -51.93 -0.32 0.94 16 41 H 0.08 1.44 7.54 -51.93 -0.39 1.05 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.06 0.88 7.13 -51.93 -0.37 0.51 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -32.43 361.24 -11.01 -43.43 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -9.33 Total: 4.20 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -2.59 Total: -10.23 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.49 Total: -59.67 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.43 -11.01 -43.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.761 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds