Wall clock time and date at job start Fri Apr 10 2020 21:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46696 * 2 1 4 4 N 1.46896 * 109.47258 * 240.00659 * 2 1 3 5 5 C 1.46906 * 111.00274 * 60.99540 * 4 2 1 6 6 C 1.50701 * 109.46796 * 78.89123 * 5 4 2 7 7 H 1.07995 * 120.00140 * 4.17988 * 6 5 4 8 8 C 1.37880 * 119.99742 * 184.17999 * 6 5 4 9 9 N 1.31521 * 119.99866 * 0.02562 * 8 6 5 10 10 Si 1.86789 * 120.00020 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47223 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47085 * 119.99876 * 10 8 6 13 13 H 1.48499 * 109.47381 * 240.00029 * 10 8 6 14 14 C 1.46902 * 110.99578 * 297.04436 * 4 2 1 15 15 H 1.09000 * 109.47577 * 59.64717 * 14 4 2 16 16 C 1.50706 * 109.46915 * 179.64061 * 14 4 2 17 17 N 1.33245 * 125.52397 * 44.69610 * 16 14 4 18 18 C 1.30833 * 109.82456 * 179.85100 * 17 16 14 19 19 N 1.34422 * 108.08043 * 0.40354 * 18 17 16 20 20 H 0.97004 * 126.82666 * 179.78982 * 19 18 17 21 21 N 1.30712 * 125.52637 * 224.99273 * 16 14 4 22 22 C 1.52998 * 109.47367 * 299.63913 * 14 4 2 23 23 C 1.52998 * 109.47160 * 302.38125 * 22 14 4 24 24 C 1.53000 * 109.46878 * 179.97438 * 23 22 14 25 25 C 1.52991 * 109.47593 * 60.00089 * 24 23 22 26 26 C 1.53012 * 109.46753 * 299.99920 * 25 24 23 27 27 C 1.52995 * 109.47208 * 60.00003 * 26 25 24 28 28 H 1.09004 * 109.47307 * 55.05455 * 1 2 3 29 29 H 1.08999 * 109.47005 * 175.05649 * 1 2 3 30 30 H 1.09005 * 109.47161 * 295.05485 * 1 2 3 31 31 H 1.08994 * 109.47132 * 120.00235 * 2 1 3 32 32 H 1.09000 * 109.46725 * 67.19937 * 3 2 1 33 33 H 1.09002 * 109.46960 * 187.19339 * 3 2 1 34 34 H 1.09000 * 109.47372 * 307.19797 * 3 2 1 35 35 H 1.09000 * 109.47080 * 198.89389 * 5 4 2 36 36 H 1.08996 * 109.47061 * 318.89207 * 5 4 2 37 37 H 0.96994 * 119.99575 * 180.02562 * 9 8 6 38 38 H 1.08001 * 125.95680 * 180.19097 * 18 17 16 39 39 H 1.09008 * 109.46327 * 62.37666 * 22 14 4 40 40 H 1.08997 * 109.47154 * 299.99548 * 23 22 14 41 41 H 1.08998 * 109.47583 * 59.99671 * 23 22 14 42 42 H 1.09002 * 109.47212 * 299.99140 * 24 23 22 43 43 H 1.09007 * 109.46925 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.47666 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.47617 * 59.99299 * 25 24 23 46 46 H 1.09000 * 109.46783 * 299.99539 * 26 25 24 47 47 H 1.08997 * 109.47057 * 180.02562 * 26 25 24 48 48 H 1.08997 * 109.47075 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.47198 * 59.99793 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6923 -1.1995 5 6 1.5683 -0.0125 -2.4210 6 6 2.4335 1.1955 -2.6725 7 1 3.2795 1.3966 -2.0320 8 6 2.1450 2.0440 -3.7203 9 7 1.1145 1.7993 -4.5000 10 14 3.2170 3.5416 -4.0317 11 1 4.3036 3.5915 -3.0207 12 1 3.8095 3.4524 -5.3904 13 1 2.3905 4.7714 -3.9318 14 6 1.6072 -2.1023 -1.1987 15 1 0.5192 -2.1626 -1.1738 16 6 2.1192 -2.7761 -2.4457 17 7 3.3470 -2.6472 -2.9470 18 6 3.4608 -3.3679 -4.0329 19 7 2.2828 -3.9759 -4.2555 20 1 2.0656 -4.5720 -4.9893 21 7 1.4290 -3.5774 -3.2139 22 6 2.1852 -2.8021 0.0330 23 6 3.7092 -2.6662 0.0286 24 6 4.2870 -3.3654 1.2607 25 6 3.9071 -4.8471 1.2314 26 6 2.3831 -4.9830 1.2357 27 6 1.8052 -4.2838 0.0037 28 1 -0.3634 0.5887 -0.8424 29 1 -0.3633 -1.0238 -0.0886 30 1 -0.3634 0.4352 0.9310 31 1 1.8933 -0.5138 0.8899 32 1 1.7855 1.9178 0.9474 33 1 3.1223 1.4454 -0.1287 34 1 1.5753 1.9923 -0.8186 35 1 1.6441 -0.6962 -3.2665 36 1 0.5317 0.3019 -2.2999 37 1 0.9118 2.3960 -5.2373 38 1 4.3458 -3.4560 -4.6457 39 1 1.7820 -2.3416 0.9351 40 1 4.1124 -3.1265 -0.8733 41 1 3.9799 -1.6106 0.0500 42 1 3.8839 -2.9047 2.1625 43 1 5.3728 -3.2690 1.2573 44 1 4.3184 -5.3453 2.1093 45 1 4.3103 -5.3079 0.3295 46 1 1.9799 -4.5223 2.1376 47 1 2.1123 -6.0386 1.2153 48 1 0.7195 -4.3802 0.0071 49 1 2.2084 -4.7445 -0.8981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602450446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:50:20 Heat of formation + Delta-G solvation = 62.516160 kcal Electronic energy + Delta-G solvation = -27837.449238 eV Core-core repulsion = 24414.166497 eV Total energy + Delta-G solvation = -3423.282741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.212 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.01137 -40.36945 -38.41116 -34.83374 -34.30543 -32.74624 -31.68904 -31.55716 -31.33042 -29.15336 -27.63566 -26.18562 -24.46802 -23.78435 -22.97242 -22.68496 -21.18860 -20.62432 -19.62571 -18.77617 -18.39680 -17.14857 -16.60783 -16.55565 -16.19001 -15.71361 -15.41452 -15.12652 -14.91961 -14.81917 -14.57217 -14.19488 -13.99375 -13.46993 -13.20387 -13.08678 -12.93624 -12.89644 -12.81851 -12.72388 -12.56326 -12.48677 -12.42733 -12.03654 -11.87062 -11.83898 -11.76417 -11.39477 -11.14486 -10.97462 -10.92316 -10.75173 -10.68680 -10.66643 -10.48428 -10.33286 -8.79660 -8.06831 -6.08699 0.82569 1.40815 1.42332 1.55422 1.96081 2.16628 2.46544 3.23036 3.24674 3.34769 3.77752 3.95715 4.00519 4.06736 4.23195 4.31087 4.37548 4.40534 4.50572 4.51823 4.59106 4.68768 4.69744 4.79982 4.82961 4.87715 4.94307 5.01687 5.09052 5.14390 5.19160 5.25168 5.29572 5.31155 5.35347 5.39856 5.44526 5.48281 5.52185 5.54610 5.65317 5.73222 5.80514 5.85934 5.90945 6.24063 6.41345 6.56518 6.74078 7.03191 7.37976 7.54171 9.03502 Molecular weight = 306.21amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.005682 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.962453 B = 4926.590290 C = 5763.334113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 C -0.129 4.129 4 N -0.507 5.507 5 C 0.216 3.784 6 C -0.474 4.474 7 H 0.068 0.932 8 C -0.006 4.006 9 N -0.944 5.944 10 Si 0.955 3.045 11 H -0.261 1.261 12 H -0.287 1.287 13 H -0.284 1.284 14 C 0.174 3.826 15 H 0.034 0.966 16 C 0.256 3.744 17 N -0.540 5.540 18 C 0.254 3.746 19 N -0.481 5.481 20 H 0.452 0.548 21 N -0.360 5.360 22 C -0.063 4.063 23 C -0.096 4.096 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.110 4.110 27 C -0.105 4.105 28 H 0.031 0.969 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.048 0.952 35 H -0.015 1.015 36 H -0.029 1.029 37 H 0.256 0.744 38 H 0.262 0.738 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.055 0.945 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -14.175 9.297 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.024 4.024 3 C -0.187 4.187 4 N -0.231 5.231 5 C 0.090 3.910 6 C -0.513 4.513 7 H 0.086 0.914 8 C -0.201 4.201 9 N -0.587 5.587 10 Si 0.781 3.219 11 H -0.185 1.185 12 H -0.213 1.213 13 H -0.210 1.210 14 C 0.063 3.937 15 H 0.051 0.949 16 C -0.027 4.027 17 N -0.267 5.267 18 C -0.045 4.045 19 N -0.201 5.201 20 H 0.300 0.700 21 N -0.191 5.191 22 C -0.082 4.082 23 C -0.134 4.134 24 C -0.152 4.152 25 C -0.151 4.151 26 C -0.147 4.147 27 C -0.143 4.143 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.003 0.997 36 H -0.011 1.011 37 H 0.064 0.936 38 H 0.277 0.723 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.642 -14.047 9.465 17.563 hybrid contribution -0.866 0.593 -1.941 2.207 sum 3.775 -13.454 7.524 15.871 Atomic orbital electron populations 1.22411 0.98494 1.01001 1.01907 1.21701 0.92086 0.95679 0.92930 1.21911 1.00936 0.95231 1.00600 1.62306 1.58835 0.99032 1.02931 1.19320 0.92654 0.92609 0.86455 1.21517 1.11459 1.07003 1.11333 0.91410 1.25764 0.96769 1.01282 0.96315 1.70131 1.30001 1.39467 1.19127 0.85532 0.79092 0.79371 0.77875 1.18469 1.21317 1.21004 1.19978 0.95295 0.89269 0.89192 0.94873 1.23850 0.88450 0.93843 0.96569 1.70450 1.20959 1.23743 1.11585 1.27006 0.92440 0.90092 0.94959 1.47935 1.09474 1.39609 1.23033 0.69997 1.77813 1.17678 1.21942 1.01624 1.21112 0.97336 0.94827 0.94959 1.21353 0.93263 1.00700 0.98065 1.21549 1.00247 0.95516 0.97928 1.21499 0.95696 0.96382 1.01518 1.21477 0.95746 1.00183 0.97312 1.21480 0.99877 0.94468 0.98481 0.95004 0.93065 0.90270 0.88787 0.91992 0.93295 0.93303 0.99655 1.01123 0.93553 0.72259 0.89714 0.92607 0.92572 0.91517 0.92041 0.90661 0.93425 0.90944 0.91374 0.92658 0.94278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.39 8.56 71.98 0.62 -5.78 16 2 C 0.08 3.11 2.69 44.92 0.12 3.23 16 3 C -0.13 -5.02 7.77 71.98 0.56 -4.46 16 4 N -0.51 -21.71 3.48 -854.76 -2.98 -24.69 16 5 C 0.22 11.61 4.27 85.56 0.36 11.97 16 6 C -0.47 -26.71 6.49 25.60 0.17 -26.54 16 7 H 0.07 3.78 6.06 -2.91 -0.02 3.76 16 8 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 9 N -0.94 -58.55 13.29 21.45 0.28 -58.26 16 10 Si 0.95 45.60 29.54 68.60 2.03 47.62 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 13 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 14 C 0.17 6.68 1.57 44.17 0.07 6.75 16 15 H 0.03 1.37 6.26 -2.39 -0.01 1.36 16 16 C 0.26 10.13 3.16 138.63 0.44 10.57 16 17 N -0.54 -20.71 9.38 -191.80 -1.80 -22.51 16 18 C 0.25 7.24 13.13 180.36 2.37 9.60 16 19 N -0.48 -13.52 7.45 -60.49 -0.45 -13.97 16 20 H 0.45 8.59 8.96 -213.09 -1.91 6.68 16 21 N -0.36 -13.62 12.77 -51.33 -0.66 -14.27 16 22 C -0.06 -1.89 1.61 -10.79 -0.02 -1.90 16 23 C -0.10 -2.91 4.70 30.59 0.14 -2.77 16 24 C -0.11 -2.64 5.92 30.59 0.18 -2.46 16 25 C -0.11 -2.29 5.92 30.60 0.18 -2.11 16 26 C -0.11 -2.24 5.92 30.60 0.18 -2.06 16 27 C -0.10 -2.80 4.93 30.59 0.15 -2.65 16 28 H 0.03 1.35 6.32 -2.38 -0.02 1.34 16 29 H 0.05 1.75 6.23 -2.39 -0.01 1.73 16 30 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.09 2.97 6.21 -2.39 -0.01 2.95 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.05 1.97 7.06 -2.39 -0.02 1.96 16 34 H 0.05 2.26 5.99 -2.39 -0.01 2.25 16 35 H -0.01 -0.88 6.26 -2.39 -0.01 -0.90 16 36 H -0.03 -1.70 5.69 -2.39 -0.01 -1.72 16 37 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.26 4.34 8.06 -2.91 -0.02 4.31 16 39 H 0.08 2.35 6.48 -2.38 -0.02 2.33 16 40 H 0.06 1.90 6.11 -2.39 -0.01 1.89 16 41 H 0.06 1.97 7.54 -2.39 -0.02 1.95 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.04 1.19 7.13 -2.39 -0.02 1.17 16 Total: -1.00 -74.11 361.24 1.46 -72.66 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.96 Total: 21.91 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 5.98 Total: -8.48 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -5.59 Total: -133.71 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -74.11 1.46 -72.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.174 kcal (2) G-P(sol) polarization free energy of solvation -74.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds