Wall clock time and date at job start Fri Apr 10 2020 21:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35242 * 126.06928 * 2 1 4 4 C 1.40435 * 107.86318 * 180.02562 * 3 2 1 5 5 N 1.39984 * 125.97667 * 179.97438 * 4 3 2 6 6 C 1.46846 * 110.99760 * 179.97438 * 5 4 3 7 7 C 1.53039 * 109.52164 * 185.84122 * 6 5 4 8 8 C 1.53117 * 109.28048 * 300.82556 * 7 6 5 9 9 N 1.46902 * 109.52488 * 177.55999 * 8 7 6 10 10 C 1.46901 * 111.00023 * 154.99519 * 9 8 7 11 11 C 1.53000 * 109.46818 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47398 * 305.00447 * 11 10 9 13 13 C 1.53002 * 109.47233 * 65.00620 * 11 10 9 14 14 C 1.52997 * 109.47060 * 185.00277 * 11 10 9 15 15 C 1.50698 * 109.47721 * 175.00208 * 14 11 10 16 16 H 1.08008 * 119.99163 * 0.02562 * 15 14 11 17 17 C 1.37869 * 120.00614 * 180.02562 * 15 14 11 18 18 N 1.31514 * 120.00228 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99783 * 359.97438 * 17 15 14 20 20 H 1.48489 * 109.47262 * 90.00178 * 19 17 15 21 21 H 1.48509 * 109.46916 * 210.00229 * 19 17 15 22 22 H 1.48493 * 109.47108 * 329.99715 * 19 17 15 23 23 C 1.53120 * 109.16374 * 57.65377 * 8 7 6 24 24 C 1.46846 * 111.00362 * 304.21245 * 5 4 3 25 25 N 1.31222 * 108.04485 * 0.23798 * 4 3 2 26 26 N 1.34960 * 126.06676 * 180.02562 * 2 1 3 27 27 H 0.97000 * 125.96886 * 0.02562 * 26 2 1 28 28 H 1.09006 * 109.46884 * 89.99871 * 1 2 3 29 29 H 1.08999 * 109.47574 * 210.00363 * 1 2 3 30 30 H 1.09000 * 109.47056 * 330.00537 * 1 2 3 31 31 H 1.07994 * 126.07225 * 0.03925 * 3 2 1 32 32 H 1.08997 * 109.45931 * 65.83178 * 6 5 4 33 33 H 1.08996 * 109.46948 * 305.85781 * 6 5 4 34 34 H 1.09003 * 109.50465 * 180.88181 * 7 6 5 35 35 H 1.09001 * 109.50176 * 60.76909 * 7 6 5 36 36 H 1.09000 * 109.51931 * 297.68242 * 8 7 6 37 37 H 1.00892 * 110.99942 * 278.95633 * 9 8 7 38 38 H 1.09002 * 109.46747 * 60.00311 * 10 9 8 39 39 H 1.08991 * 109.47315 * 300.00378 * 10 9 8 40 40 H 1.09002 * 109.47075 * 59.99068 * 13 11 10 41 41 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 42 42 H 1.09000 * 109.46986 * 299.99797 * 13 11 10 43 43 H 1.09000 * 109.47325 * 295.00173 * 14 11 10 44 44 H 1.09008 * 109.47017 * 55.00082 * 14 11 10 45 45 H 0.96997 * 120.00333 * 180.02562 * 18 17 15 46 46 H 1.08998 * 109.50243 * 62.28537 * 23 8 7 47 47 H 1.08993 * 109.50463 * 182.40601 * 23 8 7 48 48 H 1.08997 * 109.46131 * 294.17617 * 24 5 4 49 49 H 1.09003 * 109.46122 * 54.14282 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6373 0.6544 -0.0006 5 7 4.7724 1.4736 -0.0013 6 6 6.0014 0.6698 -0.0012 7 6 7.2148 1.5909 0.1449 8 6 7.2351 2.5884 -1.0167 9 7 8.3648 3.5126 -0.8504 10 6 8.7871 4.0659 -2.1441 11 6 9.9623 5.0220 -1.9306 12 1 9.6835 5.7836 -1.2023 13 6 11.1697 4.2383 -1.4122 14 6 10.3215 5.6929 -3.2579 15 6 11.3959 6.7238 -3.0253 16 1 11.7840 6.8840 -2.0302 17 6 11.8833 7.4622 -4.0826 18 7 12.8213 8.3615 -3.8795 19 14 11.2125 7.1845 -5.8037 20 1 10.0527 8.0827 -6.0338 21 1 12.2723 7.4789 -6.8015 22 1 10.7795 5.7710 -5.9441 23 6 5.9239 3.3790 -1.0232 24 6 4.7476 2.4065 -1.1351 25 7 3.6336 -0.6578 -0.0061 26 7 2.3016 -1.0909 -0.0005 27 1 2.0024 -2.0136 -0.0013 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.9721 2.1211 0.0006 32 1 6.0748 0.1185 -0.9385 33 1 5.9762 -0.0324 0.8321 34 1 8.1277 0.9954 0.1292 35 1 7.1491 2.1324 1.0885 36 1 7.3412 2.0491 -1.9580 37 1 8.1368 4.2488 -0.1993 38 1 7.9561 4.6074 -2.5963 39 1 9.0937 3.2543 -2.8037 40 1 11.4485 3.4767 -2.1404 41 1 12.0068 4.9195 -1.2596 42 1 10.9138 3.7603 -0.4666 43 1 10.6850 4.9411 -3.9584 44 1 9.4367 6.1772 -3.6714 45 1 13.1640 8.8813 -4.6233 46 1 5.8378 3.9487 -0.0979 47 1 5.9143 4.0610 -1.8734 48 1 4.8266 1.8472 -2.0673 49 1 3.8118 2.9653 -1.1252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602625674.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:50:57 Heat of formation + Delta-G solvation = 38.817235 kcal Electronic energy + Delta-G solvation = -24858.876479 eV Core-core repulsion = 21434.566076 eV Total energy + Delta-G solvation = -3424.310403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.212 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33247 -40.18980 -38.12404 -36.04862 -34.37528 -33.16627 -32.37815 -31.76435 -30.48154 -29.12802 -27.87755 -26.76773 -24.74894 -24.11789 -23.36436 -21.75641 -21.28307 -20.97628 -20.30165 -18.89940 -18.25819 -17.27679 -16.50320 -16.42852 -16.05785 -15.84010 -15.71118 -15.62375 -15.07447 -14.85956 -14.64661 -14.56341 -14.19334 -13.97135 -13.88018 -13.59340 -13.51291 -13.26275 -13.06803 -12.97047 -12.83458 -12.52238 -12.33815 -12.20246 -12.10227 -11.88578 -11.73830 -11.66211 -11.49641 -11.39617 -11.12870 -10.99086 -10.92166 -10.71983 -9.66159 -9.20418 -9.16298 -8.24569 -6.26676 0.89515 1.36071 1.38383 1.50064 1.66525 1.93366 2.38707 2.79465 3.10468 3.20671 3.74187 3.76181 3.90411 3.96886 4.13721 4.21755 4.23690 4.31382 4.37486 4.40024 4.47923 4.54355 4.60997 4.65624 4.75786 4.77626 4.82930 4.85268 4.92817 4.94768 4.98254 5.02902 5.12800 5.13317 5.16254 5.24753 5.30914 5.36328 5.42076 5.45110 5.58648 5.73954 5.75320 5.77381 6.18148 6.21740 6.37161 6.49799 6.56904 6.77229 6.81117 7.36644 8.92160 Molecular weight = 306.21amu Principal moments of inertia in cm(-1) A = 0.030017 B = 0.002204 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.589354 B =12701.412093 C =13240.024497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.111 3.889 3 C -0.299 4.299 4 C 0.243 3.757 5 N -0.456 5.456 6 C 0.070 3.930 7 C -0.095 4.095 8 C 0.088 3.912 9 N -0.681 5.681 10 C 0.076 3.924 11 C -0.070 4.070 12 H 0.051 0.949 13 C -0.116 4.116 14 C -0.007 4.007 15 C -0.517 4.517 16 H 0.034 0.966 17 C -0.001 4.001 18 N -0.954 5.954 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.248 1.248 23 C -0.140 4.140 24 C 0.074 3.926 25 N -0.364 5.364 26 N -0.470 5.470 27 H 0.449 0.551 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.345 0.655 38 H 0.031 0.969 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.025 0.975 42 H 0.066 0.934 43 H 0.016 0.984 44 H 0.015 0.985 45 H 0.264 0.736 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.036 0.964 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.656 -20.001 7.437 35.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.019 4.019 3 C -0.329 4.329 4 C -0.014 4.014 5 N -0.178 5.178 6 C -0.057 4.057 7 C -0.134 4.134 8 C -0.022 4.022 9 N -0.311 5.311 10 C -0.053 4.053 11 C -0.089 4.089 12 H 0.070 0.930 13 C -0.173 4.173 14 C -0.045 4.045 15 C -0.555 4.555 16 H 0.053 0.947 17 C -0.197 4.197 18 N -0.595 5.595 19 Si 0.772 3.228 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.171 1.171 23 C -0.179 4.179 24 C -0.053 4.053 25 N -0.194 5.194 26 N -0.182 5.182 27 H 0.295 0.705 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.175 0.825 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.049 0.951 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.054 0.946 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.306 -21.101 7.768 35.373 hybrid contribution -0.752 0.870 -1.484 1.877 sum -28.059 -20.231 6.284 35.158 Atomic orbital electron populations 1.20629 0.84014 1.05474 1.04759 1.21626 0.96288 0.86502 0.97520 1.21143 0.90058 1.00553 1.21157 1.21076 0.92576 0.89745 0.97980 1.59386 0.99743 1.16311 1.42311 1.21969 0.87918 0.94726 1.01133 1.21503 0.96366 0.96745 0.98754 1.21619 0.88115 0.93789 0.98656 1.60505 1.37290 1.22282 1.11041 1.21907 0.95702 0.96679 0.90977 1.20892 0.95097 0.95994 0.96940 0.93028 1.21497 0.96868 0.98423 1.00521 1.19571 0.94985 0.94744 0.95181 1.21464 1.20231 1.19071 0.94776 0.94738 1.26017 0.95168 0.94646 1.03864 1.70075 1.30505 1.25666 1.33284 0.85684 0.78211 0.80089 0.78801 1.19213 1.21284 1.17129 1.22302 0.94231 0.98051 1.03320 1.22088 1.00440 0.93404 0.89414 1.77397 0.98511 1.11931 1.31596 1.45997 1.02708 1.09021 1.60459 0.70458 0.88695 0.89200 0.88406 0.82510 0.94618 0.90553 0.90431 0.90975 0.91391 0.83659 0.95124 0.91641 0.94011 0.95548 0.91518 0.96553 0.96643 0.92733 0.90290 0.90659 0.94575 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.33 10.43 71.24 0.74 0.41 16 2 C 0.11 1.42 7.20 41.39 0.30 1.72 16 3 C -0.30 -5.23 10.00 22.11 0.22 -5.01 16 4 C 0.24 5.40 6.59 133.39 0.88 6.28 16 5 N -0.46 -9.74 4.75 -700.66 -3.33 -13.07 16 6 C 0.07 1.51 4.89 86.33 0.42 1.93 16 7 C -0.10 -1.96 5.70 30.65 0.17 -1.79 16 8 C 0.09 1.90 2.53 44.99 0.11 2.02 16 9 N -0.68 -17.24 5.71 -491.16 -2.80 -20.04 16 10 C 0.08 2.30 4.88 86.30 0.42 2.72 16 11 C -0.07 -2.70 2.48 -10.79 -0.03 -2.73 16 12 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 13 C -0.12 -4.44 8.89 71.98 0.64 -3.80 16 14 C -0.01 -0.32 3.52 29.85 0.10 -0.22 16 15 C -0.52 -30.00 8.96 25.60 0.23 -29.77 16 16 H 0.03 2.21 7.30 -2.91 -0.02 2.18 16 17 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 18 N -0.95 -60.78 13.96 21.44 0.30 -60.48 16 19 Si 0.95 44.94 27.47 68.60 1.88 46.82 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 23 C -0.14 -2.65 5.35 30.65 0.16 -2.49 16 24 C 0.07 1.38 5.34 86.32 0.46 1.84 16 25 N -0.36 -8.30 11.73 -54.54 -0.64 -8.94 16 26 N -0.47 -7.08 7.35 -48.03 -0.35 -7.43 16 27 H 0.45 3.78 8.96 -213.34 -1.91 1.87 16 28 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 29 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.16 2.28 7.91 -2.91 -0.02 2.25 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.73 7.93 -2.39 -0.02 1.71 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.56 7.80 -2.39 -0.02 1.55 16 37 H 0.34 8.38 8.45 -89.70 -0.76 7.62 16 38 H 0.03 0.89 7.51 -2.39 -0.02 0.87 16 39 H 0.07 1.99 8.06 -2.39 -0.02 1.97 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 41 H 0.03 1.15 6.95 -2.39 -0.02 1.13 16 42 H 0.07 2.24 7.75 -2.39 -0.02 2.23 16 43 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 44 H 0.02 0.70 7.57 -2.38 -0.02 0.68 16 45 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 46 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 47 H 0.07 1.43 7.54 -2.39 -0.02 1.41 16 48 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.09 1.54 7.44 -2.39 -0.02 1.52 16 Total: -1.00 -71.86 381.98 -1.43 -73.28 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -1.80 Total: 18.34 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 5.31 Total: -28.48 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -6.83 Total: -109.97 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -71.86 -1.43 -73.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602625674.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.102 kcal (2) G-P(sol) polarization free energy of solvation -71.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds