Wall clock time and date at job start Fri Apr 10 2020 21:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 109.46888 * 2 1 4 4 N 1.46900 * 109.47306 * 119.99345 * 2 1 3 5 5 C 1.46900 * 110.99935 * 275.00452 * 4 2 1 6 6 C 1.53010 * 109.47050 * 174.73271 * 5 4 2 7 7 C 1.50702 * 115.54761 * 65.17196 * 6 5 4 8 8 H 1.08001 * 119.99506 * 265.09190 * 7 6 5 9 9 C 1.37877 * 120.00271 * 85.08898 * 7 6 5 10 10 N 1.31514 * 119.99839 * 353.21225 * 9 7 6 11 11 Si 1.86800 * 120.00051 * 173.20611 * 9 7 6 12 12 H 1.48505 * 109.47053 * 60.00351 * 11 9 7 13 13 H 1.48493 * 109.47293 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47119 * 300.00746 * 11 9 7 15 15 C 1.52997 * 117.49893 * 279.49827 * 6 5 4 16 16 C 1.52998 * 117.49865 * 210.83923 * 6 5 4 17 17 C 1.52998 * 109.47493 * 239.99936 * 2 1 3 18 18 H 1.09005 * 109.49789 * 300.07234 * 17 2 1 19 19 C 1.53120 * 109.50344 * 179.97438 * 17 2 1 20 20 C 1.53123 * 109.15985 * 182.39971 * 19 17 2 21 21 C 1.53041 * 109.30833 * 57.63511 * 20 19 17 22 22 N 1.46854 * 109.52117 * 300.88090 * 21 20 19 23 23 C 1.46901 * 110.99451 * 185.80236 * 22 21 20 24 24 C 1.53782 * 113.61315 * 148.24538 * 23 22 21 25 25 C 1.53778 * 87.07926 * 220.01904 * 24 23 22 26 26 C 1.53779 * 113.61084 * 50.74792 * 23 22 21 27 27 C 1.46840 * 111.23231 * 61.68261 * 22 21 20 28 28 H 1.09004 * 109.46565 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47457 * 300.00231 * 1 2 3 30 30 H 1.08992 * 109.47224 * 60.00756 * 1 2 3 31 31 H 1.00902 * 111.00049 * 151.04990 * 4 2 1 32 32 H 1.08997 * 109.47387 * 294.73240 * 5 4 2 33 33 H 1.08996 * 109.47529 * 54.73940 * 5 4 2 34 34 H 0.96999 * 119.99810 * 185.04686 * 10 9 7 35 35 H 1.09000 * 117.49577 * 0.02562 * 15 6 5 36 36 H 1.08996 * 117.49547 * 145.01622 * 15 6 5 37 37 H 1.09003 * 117.49385 * 214.98086 * 16 6 5 38 38 H 1.08997 * 117.50129 * 359.97438 * 16 6 5 39 39 H 1.09004 * 109.52178 * 62.49960 * 19 17 2 40 40 H 1.08996 * 109.52464 * 302.30774 * 19 17 2 41 41 H 1.09000 * 109.50286 * 177.59137 * 20 19 17 42 42 H 1.08998 * 109.50293 * 297.67294 * 20 19 17 43 43 H 1.08997 * 109.46411 * 60.85340 * 21 20 19 44 44 H 1.08995 * 109.45885 * 180.82795 * 21 20 19 45 45 H 1.08993 * 112.84612 * 279.55219 * 23 22 21 46 46 H 1.08998 * 113.61440 * 334.56473 * 24 23 22 47 47 H 1.09000 * 113.61275 * 105.46710 * 24 23 22 48 48 H 1.08998 * 113.61326 * 270.88316 * 25 24 23 49 49 H 1.09002 * 113.61323 * 139.98304 * 25 24 23 50 50 H 1.09000 * 113.61487 * 254.52687 * 26 23 22 51 51 H 1.08999 * 113.62093 * 25.35255 * 26 23 22 52 52 H 1.09003 * 109.46656 * 178.26159 * 27 22 21 53 53 H 1.08999 * 109.45742 * 58.28718 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6923 1.1995 5 6 2.0824 0.2229 2.3469 6 6 2.4692 -0.5601 3.6033 7 6 3.8513 -1.1607 3.5950 8 1 3.9930 -2.1853 3.2843 9 6 4.9350 -0.4021 3.9839 10 7 4.7843 0.8803 4.2336 11 14 6.6172 -1.1959 4.1562 12 1 7.0305 -1.7686 2.8499 13 1 7.6055 -0.1735 4.5839 14 1 6.5526 -2.2769 5.1723 15 6 1.3639 -1.3407 4.3174 16 6 1.9240 -0.0606 4.9427 17 6 2.0401 -0.7212 -1.2492 18 1 1.6759 -1.7487 -1.2503 19 6 3.5713 -0.7211 -1.2502 20 6 4.0731 -1.3913 -2.5322 21 6 3.5080 -0.6495 -3.7456 22 7 2.0404 -0.6777 -3.6983 23 6 1.4633 -0.0950 -4.9171 24 6 0.1220 -0.7263 -5.3262 25 6 0.6153 -0.6413 -6.7802 26 6 2.0448 -0.6805 -6.2148 27 6 1.5339 0.0019 -2.4993 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 2.9174 -1.1203 1.0288 32 1 2.8280 0.9946 2.1558 33 1 1.1077 0.6879 2.4944 34 1 5.5581 1.4292 4.4357 35 1 0.3614 -1.2967 3.8919 36 1 1.6366 -2.2884 4.7815 37 1 2.5649 -0.1669 5.8180 38 1 1.2901 0.8259 4.9290 39 1 3.9361 -1.2729 -0.3838 40 1 3.9354 0.3054 -1.2092 41 1 5.1622 -1.3561 -2.5590 42 1 3.7419 -2.4296 -2.5537 43 1 3.8513 0.3849 -3.7313 44 1 3.8518 -1.1336 -4.6597 45 1 1.4470 0.9946 -4.8986 46 1 -0.0072 -1.7476 -4.9680 47 1 -0.7401 -0.0920 -5.1197 48 1 0.3657 0.2991 -7.2717 49 1 0.3589 -1.5146 -7.3800 50 1 2.7350 -0.0092 -6.7258 51 1 2.4426 -1.6887 -6.0992 52 1 0.4439 -0.0089 -2.5088 53 1 1.8867 1.0332 -2.4901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602812592.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:51:33 Heat of formation + Delta-G solvation = 33.535814 kcal Electronic energy + Delta-G solvation = -26527.448199 eV Core-core repulsion = 23206.449119 eV Total energy + Delta-G solvation = -3320.999079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 306.237 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.99847 -38.16949 -36.71890 -35.04192 -32.04313 -31.88436 -31.11565 -28.55512 -25.97706 -25.75896 -25.36752 -24.51124 -22.81162 -22.50895 -20.94541 -20.16251 -19.66344 -19.30542 -18.83900 -16.73469 -15.94989 -15.64113 -15.28734 -14.63718 -14.59596 -14.46055 -14.18828 -14.00834 -13.69501 -13.40960 -13.04206 -12.75783 -12.70947 -12.53699 -12.51322 -11.92823 -11.82150 -11.69507 -11.40977 -11.19008 -11.16781 -11.09998 -10.93087 -10.86284 -10.79657 -10.69688 -10.48145 -10.43458 -10.22044 -10.08440 -9.98824 -9.84621 -9.31347 -8.70654 -8.38005 -8.35028 -8.00318 -7.39789 -5.99494 -4.05404 3.30405 3.35955 3.38992 3.80741 4.34399 4.41740 4.48887 4.64582 4.71822 4.82274 4.92682 5.00919 5.05818 5.28435 5.31202 5.31849 5.43523 5.47595 5.52819 5.59310 5.61550 5.63975 5.65654 5.74379 5.75864 5.80567 5.82701 5.88626 5.99360 6.04291 6.15703 6.18057 6.19324 6.23453 6.26894 6.41062 6.49984 6.54055 6.59264 6.65779 6.69453 6.92410 6.93605 7.01128 7.08542 7.14277 7.22561 7.58628 7.62975 7.90996 8.11107 8.40548 8.54754 8.97823 9.59909 11.08340 Molecular weight = 306.24amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.003361 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.774883 B = 8329.905510 C = 9413.089944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.088 3.912 3 H 0.032 0.968 4 N -0.676 5.676 5 C 0.108 3.892 6 C 0.053 3.947 7 C -0.493 4.493 8 H 0.059 0.941 9 C 0.071 3.929 10 N -0.880 5.880 11 Si 0.886 3.114 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.277 1.277 15 C -0.200 4.200 16 C -0.164 4.164 17 C -0.080 4.080 18 H 0.085 0.915 19 C -0.123 4.123 20 C -0.114 4.114 21 C 0.056 3.944 22 N -0.526 5.526 23 C 0.053 3.947 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.133 4.133 27 C 0.064 3.936 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.347 0.653 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.259 0.741 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.028 0.972 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.062 0.938 51 H 0.089 0.911 52 H 0.077 0.923 53 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 -0.788 -19.318 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 H 0.050 0.950 4 N -0.310 5.310 5 C -0.021 4.021 6 C 0.052 3.948 7 C -0.531 4.531 8 H 0.077 0.923 9 C -0.132 4.132 10 N -0.517 5.517 11 Si 0.714 3.286 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.237 4.237 16 C -0.202 4.202 17 C -0.099 4.099 18 H 0.103 0.897 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.072 4.072 22 N -0.250 5.250 23 C -0.055 4.055 24 C -0.163 4.163 25 C -0.181 4.181 26 C -0.171 4.171 27 C -0.064 4.064 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.169 0.831 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.107 0.893 52 H 0.095 0.905 53 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.861 -1.355 -18.993 20.239 hybrid contribution 2.038 1.256 -0.002 2.394 sum -4.823 -0.099 -18.995 19.598 Atomic orbital electron populations 1.21816 0.95504 1.01875 1.00255 1.21433 0.95265 0.95551 0.90065 0.95037 1.60531 1.34498 1.33067 1.02908 1.21438 0.96919 0.93229 0.90513 1.18717 0.91848 0.96241 0.88002 1.20440 0.89904 0.98048 1.44724 0.92288 1.24991 0.98637 0.94872 0.94715 1.69985 1.29856 1.04787 1.47086 0.86765 0.84062 0.79131 0.78663 1.20249 1.21463 1.20236 1.22858 0.97977 0.95322 1.07582 1.22528 1.02905 0.94826 0.99917 1.21285 0.95003 1.00845 0.92779 0.89703 1.21699 0.95472 1.00872 0.98037 1.21559 0.99516 1.00249 0.93866 1.22071 0.87429 0.98661 0.98990 1.62146 1.06764 1.54672 1.01424 1.23156 0.96595 0.96463 0.89330 1.22953 0.96068 1.02052 0.95193 1.22729 0.96722 1.01940 0.96717 1.23021 0.96627 1.01857 0.95555 1.22144 0.99918 0.94954 0.89369 0.92212 0.93069 0.93505 0.83128 0.94961 0.94604 0.93125 0.91714 0.90995 0.90415 0.92296 0.90616 0.92541 0.91726 0.91090 0.95386 0.90940 0.91980 0.89118 0.91916 0.90474 0.91231 0.91914 0.89254 0.90496 0.95358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.06 37.16 0.34 -1.65 16 2 C 0.09 1.42 2.23 -67.72 -0.15 1.26 16 3 H 0.03 0.55 7.86 -51.92 -0.41 0.14 16 4 N -0.68 -13.21 6.28 -106.72 -0.67 -13.88 16 5 C 0.11 2.43 5.32 -3.82 -0.02 2.41 16 6 C 0.05 1.30 1.56 -155.66 -0.24 1.05 16 7 C -0.49 -13.22 8.33 -34.44 -0.29 -13.51 16 8 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 9 C 0.07 1.91 5.39 -17.82 -0.10 1.82 16 10 N -0.88 -24.76 12.94 55.43 0.72 -24.05 16 11 Si 0.89 20.94 29.55 -169.99 -5.02 15.92 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.20 -4.55 9.96 -26.70 -0.27 -4.81 16 16 C -0.16 -3.95 9.44 -26.70 -0.25 -4.20 16 17 C -0.08 -1.12 2.07 -90.54 -0.19 -1.31 16 18 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 19 C -0.12 -1.76 4.99 -26.61 -0.13 -1.90 16 20 C -0.11 -1.38 6.09 -26.65 -0.16 -1.55 16 21 C 0.06 0.63 5.23 -3.83 -0.02 0.61 16 22 N -0.53 -5.99 4.64 -225.72 -1.05 -7.04 16 23 C 0.05 0.52 3.29 -66.90 -0.22 0.30 16 24 C -0.12 -1.09 7.88 -25.92 -0.20 -1.30 16 25 C -0.14 -1.06 8.08 -25.92 -0.21 -1.27 16 26 C -0.13 -1.10 6.45 -25.92 -0.17 -1.27 16 27 C 0.06 0.79 4.35 -3.84 -0.02 0.78 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.79 7.39 -51.93 -0.38 0.41 16 30 H 0.05 0.58 6.45 -51.93 -0.34 0.24 16 31 H 0.35 7.11 5.78 -39.29 -0.23 6.88 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.78 7.28 -51.93 -0.38 0.40 16 34 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.08 1.22 6.32 -51.93 -0.33 0.89 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.72 6.53 -51.93 -0.34 0.38 16 45 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.09 0.78 7.60 -51.93 -0.39 0.38 16 52 H 0.08 0.92 6.46 -51.93 -0.34 0.58 16 53 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -27.07 398.76 -12.59 -39.67 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -10.28 Total: 7.90 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -2.30 Total: -24.53 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -1.00 Total: -44.97 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -27.07 -12.59 -39.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602812592.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.203 kcal (2) G-P(sol) polarization free energy of solvation -27.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds