Wall clock time and date at job start Fri Apr 10 2020 21:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 109.46888 * 2 1 4 4 N 1.46900 * 109.47306 * 119.99345 * 2 1 3 5 5 C 1.46900 * 110.99935 * 275.00452 * 4 2 1 6 6 C 1.53010 * 109.47050 * 174.73271 * 5 4 2 7 7 C 1.50702 * 115.54761 * 65.17196 * 6 5 4 8 8 H 1.08001 * 119.99506 * 265.09190 * 7 6 5 9 9 C 1.37877 * 120.00271 * 85.08898 * 7 6 5 10 10 N 1.31514 * 119.99839 * 353.21225 * 9 7 6 11 11 Si 1.86800 * 120.00051 * 173.20611 * 9 7 6 12 12 H 1.48505 * 109.47053 * 60.00351 * 11 9 7 13 13 H 1.48493 * 109.47293 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47119 * 300.00746 * 11 9 7 15 15 C 1.52997 * 117.49893 * 279.49827 * 6 5 4 16 16 C 1.52998 * 117.49865 * 210.83923 * 6 5 4 17 17 C 1.52998 * 109.47493 * 239.99936 * 2 1 3 18 18 H 1.09005 * 109.49789 * 300.07234 * 17 2 1 19 19 C 1.53120 * 109.50344 * 179.97438 * 17 2 1 20 20 C 1.53123 * 109.15985 * 182.39971 * 19 17 2 21 21 C 1.53041 * 109.30833 * 57.63511 * 20 19 17 22 22 N 1.46854 * 109.52117 * 300.88090 * 21 20 19 23 23 C 1.46901 * 110.99451 * 185.80236 * 22 21 20 24 24 C 1.53782 * 113.61315 * 148.24538 * 23 22 21 25 25 C 1.53778 * 87.07926 * 220.01904 * 24 23 22 26 26 C 1.53779 * 113.61084 * 50.74792 * 23 22 21 27 27 C 1.46840 * 111.23231 * 61.68261 * 22 21 20 28 28 H 1.09004 * 109.46565 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47457 * 300.00231 * 1 2 3 30 30 H 1.08992 * 109.47224 * 60.00756 * 1 2 3 31 31 H 1.00902 * 111.00049 * 151.04990 * 4 2 1 32 32 H 1.08997 * 109.47387 * 294.73240 * 5 4 2 33 33 H 1.08996 * 109.47529 * 54.73940 * 5 4 2 34 34 H 0.96999 * 119.99810 * 185.04686 * 10 9 7 35 35 H 1.09000 * 117.49577 * 0.02562 * 15 6 5 36 36 H 1.08996 * 117.49547 * 145.01622 * 15 6 5 37 37 H 1.09003 * 117.49385 * 214.98086 * 16 6 5 38 38 H 1.08997 * 117.50129 * 359.97438 * 16 6 5 39 39 H 1.09004 * 109.52178 * 62.49960 * 19 17 2 40 40 H 1.08996 * 109.52464 * 302.30774 * 19 17 2 41 41 H 1.09000 * 109.50286 * 177.59137 * 20 19 17 42 42 H 1.08998 * 109.50293 * 297.67294 * 20 19 17 43 43 H 1.08997 * 109.46411 * 60.85340 * 21 20 19 44 44 H 1.08995 * 109.45885 * 180.82795 * 21 20 19 45 45 H 1.08993 * 112.84612 * 279.55219 * 23 22 21 46 46 H 1.08998 * 113.61440 * 334.56473 * 24 23 22 47 47 H 1.09000 * 113.61275 * 105.46710 * 24 23 22 48 48 H 1.08998 * 113.61326 * 270.88316 * 25 24 23 49 49 H 1.09002 * 113.61323 * 139.98304 * 25 24 23 50 50 H 1.09000 * 113.61487 * 254.52687 * 26 23 22 51 51 H 1.08999 * 113.62093 * 25.35255 * 26 23 22 52 52 H 1.09003 * 109.46656 * 178.26159 * 27 22 21 53 53 H 1.08999 * 109.45742 * 58.28718 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6923 1.1995 5 6 2.0824 0.2229 2.3469 6 6 2.4692 -0.5601 3.6033 7 6 3.8513 -1.1607 3.5950 8 1 3.9930 -2.1853 3.2843 9 6 4.9350 -0.4021 3.9839 10 7 4.7843 0.8803 4.2336 11 14 6.6172 -1.1959 4.1562 12 1 7.0305 -1.7686 2.8499 13 1 7.6055 -0.1735 4.5839 14 1 6.5526 -2.2769 5.1723 15 6 1.3639 -1.3407 4.3174 16 6 1.9240 -0.0606 4.9427 17 6 2.0401 -0.7212 -1.2492 18 1 1.6759 -1.7487 -1.2503 19 6 3.5713 -0.7211 -1.2502 20 6 4.0731 -1.3913 -2.5322 21 6 3.5080 -0.6495 -3.7456 22 7 2.0404 -0.6777 -3.6983 23 6 1.4633 -0.0950 -4.9171 24 6 0.1220 -0.7263 -5.3262 25 6 0.6153 -0.6413 -6.7802 26 6 2.0448 -0.6805 -6.2148 27 6 1.5339 0.0019 -2.4993 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 2.9174 -1.1203 1.0288 32 1 2.8280 0.9946 2.1558 33 1 1.1077 0.6879 2.4944 34 1 5.5581 1.4292 4.4357 35 1 0.3614 -1.2967 3.8919 36 1 1.6366 -2.2884 4.7815 37 1 2.5649 -0.1669 5.8180 38 1 1.2901 0.8259 4.9290 39 1 3.9361 -1.2729 -0.3838 40 1 3.9354 0.3054 -1.2092 41 1 5.1622 -1.3561 -2.5590 42 1 3.7419 -2.4296 -2.5537 43 1 3.8513 0.3849 -3.7313 44 1 3.8518 -1.1336 -4.6597 45 1 1.4470 0.9946 -4.8986 46 1 -0.0072 -1.7476 -4.9680 47 1 -0.7401 -0.0920 -5.1197 48 1 0.3657 0.2991 -7.2717 49 1 0.3589 -1.5146 -7.3800 50 1 2.7350 -0.0092 -6.7258 51 1 2.4426 -1.6887 -6.0992 52 1 0.4439 -0.0089 -2.5088 53 1 1.8867 1.0332 -2.4901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602812592.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:51:32 Heat of formation + Delta-G solvation = 19.924510 kcal Electronic energy + Delta-G solvation = -26528.038429 eV Core-core repulsion = 23206.449119 eV Total energy + Delta-G solvation = -3321.589310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 306.237 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.91775 -39.31671 -38.31710 -36.36387 -33.97318 -33.03158 -32.48886 -29.74364 -27.67043 -26.80189 -26.49300 -25.82458 -23.94629 -23.50527 -22.83318 -21.35261 -21.02854 -20.59174 -20.01679 -17.96654 -17.59847 -16.67470 -16.56702 -16.42552 -15.82897 -15.64657 -15.49219 -15.26331 -15.06098 -14.62375 -14.47102 -14.00468 -13.91812 -13.58158 -13.41906 -13.30711 -13.23002 -13.04483 -12.87787 -12.79622 -12.55125 -12.41348 -12.38287 -12.24603 -11.98571 -11.96737 -11.82290 -11.59000 -11.41549 -11.27378 -11.26164 -10.92521 -10.89975 -10.70982 -10.37974 -9.91149 -9.25886 -9.06283 -8.07822 -6.19018 1.40759 1.43079 1.49438 2.42833 2.89646 3.19989 3.33059 3.62543 3.74502 3.77091 3.84186 3.89570 3.95229 4.05615 4.08943 4.20587 4.36184 4.39466 4.48709 4.51688 4.54258 4.57228 4.65953 4.66497 4.76116 4.77118 4.82012 4.87899 4.92501 4.95395 4.98999 5.01844 5.04697 5.06885 5.07417 5.10471 5.12257 5.14464 5.24836 5.29185 5.30696 5.39881 5.43207 5.50482 5.57091 5.67502 5.70826 5.81326 6.14978 6.27630 6.43754 6.51084 6.72413 6.90642 7.48887 8.99297 Molecular weight = 306.24amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.003361 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.774883 B = 8329.905510 C = 9413.089944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.087 3.913 3 H 0.017 0.983 4 N -0.674 5.674 5 C 0.125 3.875 6 C 0.029 3.971 7 C -0.504 4.504 8 H 0.052 0.948 9 C 0.027 3.973 10 N -0.908 5.908 11 Si 0.944 3.056 12 H -0.269 1.269 13 H -0.288 1.288 14 H -0.275 1.275 15 C -0.177 4.177 16 C -0.169 4.169 17 C -0.069 4.069 18 H 0.079 0.921 19 C -0.122 4.122 20 C -0.109 4.109 21 C 0.059 3.941 22 N -0.530 5.530 23 C 0.045 3.955 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.129 4.129 27 C 0.072 3.928 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.340 0.660 32 H -0.003 1.003 33 H 0.043 0.957 34 H 0.258 0.742 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.023 0.977 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.069 0.931 51 H 0.086 0.914 52 H 0.085 0.915 53 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 -1.510 -21.339 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.024 4.024 3 H 0.035 0.965 4 N -0.307 5.307 5 C -0.004 4.004 6 C 0.029 3.971 7 C -0.542 4.542 8 H 0.070 0.930 9 C -0.173 4.173 10 N -0.546 5.546 11 Si 0.770 3.230 12 H -0.194 1.194 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.215 4.215 16 C -0.208 4.208 17 C -0.088 4.088 18 H 0.098 0.902 19 C -0.160 4.160 20 C -0.147 4.147 21 C -0.069 4.069 22 N -0.254 5.254 23 C -0.063 4.063 24 C -0.163 4.163 25 C -0.172 4.172 26 C -0.167 4.167 27 C -0.056 4.056 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.160 0.840 32 H 0.016 0.984 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.041 0.959 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.096 0.904 50 H 0.088 0.912 51 H 0.105 0.895 52 H 0.104 0.896 53 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.533 -2.088 -21.028 22.434 hybrid contribution 2.216 1.477 0.625 2.735 sum -5.317 -0.612 -20.404 21.094 Atomic orbital electron populations 1.21762 0.93769 1.02179 1.01037 1.21542 0.96496 0.94661 0.89655 0.96462 1.60559 1.33927 1.32615 1.03583 1.21134 0.95954 0.92454 0.90897 1.18871 0.91879 0.97452 0.88947 1.20665 0.91302 0.97788 1.44426 0.92979 1.25636 1.01891 0.95247 0.94537 1.70098 1.30588 1.05860 1.48069 0.85831 0.80135 0.78184 0.78812 1.19367 1.21384 1.20044 1.22830 0.98227 0.94473 1.05930 1.22450 1.03147 0.96196 0.98967 1.21147 0.94603 1.00340 0.92691 0.90237 1.21656 0.95861 0.99953 0.98515 1.21522 1.00056 1.00041 0.93053 1.22060 0.87412 0.98328 0.99052 1.62169 1.06851 1.54711 1.01681 1.23294 0.97530 0.96447 0.89048 1.22940 0.95672 1.01498 0.96140 1.22711 0.95682 1.02841 0.96000 1.23003 0.97359 1.01669 0.94653 1.22013 1.00288 0.94253 0.89048 0.92061 0.94075 0.90969 0.83959 0.98433 0.93864 0.93329 0.89678 0.91022 0.92585 0.91282 0.92838 0.93833 0.90950 0.91060 0.95913 0.89236 0.92189 0.89915 0.91520 0.89511 0.90413 0.91200 0.89529 0.89641 0.96070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.06 71.98 0.65 -2.94 16 2 C 0.09 2.79 2.23 44.91 0.10 2.89 16 3 H 0.02 0.61 7.86 -2.38 -0.02 0.60 16 4 N -0.67 -26.60 6.28 -491.56 -3.09 -29.68 16 5 C 0.13 5.72 5.32 86.31 0.46 6.18 16 6 C 0.03 1.45 1.56 -52.93 -0.08 1.37 16 7 C -0.50 -27.37 8.33 25.60 0.21 -27.16 16 8 H 0.05 2.84 7.82 -2.91 -0.02 2.81 16 9 C 0.03 1.48 5.39 84.65 0.46 1.93 16 10 N -0.91 -52.14 12.94 21.45 0.28 -51.86 16 11 Si 0.94 43.40 29.55 68.60 2.03 45.42 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 15 C -0.18 -7.92 9.96 30.62 0.30 -7.61 16 16 C -0.17 -8.23 9.44 30.62 0.29 -7.94 16 17 C -0.07 -1.90 2.07 -10.74 -0.02 -1.92 16 18 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 19 C -0.12 -3.54 4.99 30.68 0.15 -3.39 16 20 C -0.11 -2.55 6.09 30.65 0.19 -2.37 16 21 C 0.06 1.23 5.23 86.33 0.45 1.68 16 22 N -0.53 -11.22 4.64 -868.05 -4.02 -15.24 16 23 C 0.04 0.78 3.29 45.44 0.15 0.93 16 24 C -0.12 -1.90 7.88 31.12 0.25 -1.66 16 25 C -0.13 -1.64 8.08 31.12 0.25 -1.39 16 26 C -0.13 -1.82 6.45 31.12 0.20 -1.62 16 27 C 0.07 1.70 4.35 86.33 0.38 2.07 16 28 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.04 1.22 7.39 -2.38 -0.02 1.20 16 30 H 0.07 1.63 6.45 -2.39 -0.02 1.61 16 31 H 0.34 14.27 5.78 -89.69 -0.52 13.76 16 32 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.04 1.88 7.28 -2.39 -0.02 1.86 16 34 H 0.26 14.26 8.32 -92.71 -0.77 13.49 16 35 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 36 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.05 1.78 6.32 -2.39 -0.02 1.76 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.09 1.58 6.53 -2.39 -0.02 1.57 16 45 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.09 1.29 7.60 -2.39 -0.02 1.27 16 52 H 0.09 1.86 6.46 -2.39 -0.02 1.85 16 53 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -57.81 398.76 -0.10 -57.91 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.33 Total: 34.38 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 4.38 Total: -40.92 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -6.83 Total: -96.79 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -57.81 -0.10 -57.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602812592.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.832 kcal (2) G-P(sol) polarization free energy of solvation -57.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds