Wall clock time and date at job start Fri Apr 10 2020 21:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.94880 * 2 1 4 4 C 1.53958 * 113.66414 * 131.41630 * 2 1 3 5 5 H 1.08999 * 113.84641 * 333.55135 * 4 2 1 6 6 N 1.46902 * 113.74508 * 202.23851 * 4 2 1 7 7 C 1.46897 * 111.00045 * 140.65538 * 6 4 2 8 8 C 1.53043 * 109.45977 * 204.61955 * 7 6 4 9 9 C 1.53192 * 109.31210 * 178.61288 * 8 7 6 10 10 N 1.46928 * 108.77875 * 54.63323 * 9 8 7 11 11 C 1.36934 * 120.63089 * 126.39114 * 10 9 8 12 12 H 1.08008 * 120.00004 * 207.70576 * 11 10 9 13 13 C 1.38812 * 120.00215 * 27.70084 * 11 10 9 14 14 N 1.31614 * 119.99888 * 17.63443 * 13 11 10 15 15 Si 1.86793 * 120.00136 * 197.62800 * 13 11 10 16 16 H 1.48499 * 109.47430 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47092 * 120.00354 * 15 13 11 18 18 H 1.48501 * 109.47417 * 240.00040 * 15 13 11 19 19 C 1.46925 * 118.73833 * 306.39246 * 10 9 8 20 20 C 1.53045 * 109.46586 * 84.54914 * 7 6 4 21 21 C 1.53220 * 86.25317 * 87.90032 * 4 2 1 22 22 H 1.09007 * 111.34780 * 275.49372 * 21 4 2 23 23 C 1.50507 * 115.71416 * 147.24234 * 21 4 2 24 24 C 1.51623 * 114.39579 * 290.09069 * 23 21 4 25 25 C 1.52602 * 111.07642 * 313.08926 * 24 23 21 26 26 C 1.52981 * 108.83277 * 63.69577 * 25 24 23 27 27 C 1.52535 * 87.67992 * 26.88785 * 21 4 2 28 28 H 1.08999 * 113.96066 * 217.49044 * 27 21 4 29 29 H 1.09006 * 109.47166 * 308.09012 * 1 2 3 30 30 H 1.09000 * 109.47429 * 68.09057 * 1 2 3 31 31 H 1.09003 * 109.47442 * 188.09279 * 1 2 3 32 32 H 1.09004 * 109.46861 * 195.78576 * 3 2 1 33 33 H 1.08992 * 109.47307 * 315.79049 * 3 2 1 34 34 H 1.08997 * 109.46905 * 75.79638 * 3 2 1 35 35 H 1.00893 * 111.00324 * 16.69428 * 6 4 2 36 36 H 1.09003 * 109.44756 * 324.58208 * 7 6 4 37 37 H 1.09003 * 109.49270 * 298.55898 * 8 7 6 38 38 H 1.08998 * 109.50089 * 58.65993 * 8 7 6 39 39 H 1.09004 * 109.58915 * 174.42138 * 9 8 7 40 40 H 1.09002 * 109.58926 * 294.84184 * 9 8 7 41 41 H 0.97002 * 120.00080 * 179.97438 * 14 13 11 42 42 H 1.09001 * 109.58591 * 293.82160 * 19 10 9 43 43 H 1.08995 * 109.70828 * 173.46402 * 19 10 9 44 44 H 1.09000 * 109.49115 * 301.33635 * 20 7 6 45 45 H 1.08993 * 109.49528 * 61.39924 * 20 7 6 46 46 H 1.09003 * 108.50233 * 51.36501 * 23 21 4 47 47 H 1.09007 * 108.50082 * 168.81814 * 23 21 4 48 48 H 1.09007 * 109.15787 * 73.49709 * 24 23 21 49 49 H 1.09001 * 109.15962 * 192.67600 * 24 23 21 50 50 H 1.09001 * 109.57897 * 183.50010 * 25 24 23 51 51 H 1.08999 * 109.57530 * 303.88753 * 25 24 23 52 52 H 1.08996 * 109.51918 * 56.26033 * 26 25 24 53 53 H 1.09001 * 109.51461 * 176.36857 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1266 1.4089 0.0000 4 6 2.1480 -0.9328 1.0575 5 1 1.5073 -1.1038 1.9226 6 7 3.5254 -0.5791 1.4258 7 6 3.7452 -0.7506 2.8681 8 6 4.8926 0.1556 3.3202 9 6 5.0961 0.0000 4.8306 10 7 5.2946 -1.4232 5.1369 11 6 6.3903 -1.8381 5.8456 12 1 6.7815 -2.8344 5.7009 13 6 6.9984 -0.9783 6.7499 14 7 6.3512 0.0805 7.1886 15 14 8.7352 -1.3239 7.3444 16 1 9.2391 -2.5661 6.7055 17 1 9.6185 -0.1871 6.9801 18 1 8.7290 -1.4929 8.8197 19 6 4.2950 -2.3927 4.6683 20 6 4.1005 -2.2104 3.1598 21 6 2.0565 -2.0328 -0.0052 22 1 1.0690 -2.4945 -0.0144 23 6 3.1433 -3.0732 0.0366 24 6 4.5106 -2.5675 -0.3802 25 6 4.4257 -1.7543 -1.6686 26 6 3.5764 -0.5082 -1.4111 27 6 2.1496 -0.9353 -1.0603 28 1 1.5272 -1.1108 -1.9378 29 1 -0.3634 0.6340 0.8089 30 1 -0.3634 0.3835 -0.9534 31 1 -0.3634 -1.0174 0.1447 32 1 3.1789 1.3578 -0.2796 33 1 1.5900 2.0307 -0.7165 34 1 2.0360 1.8417 0.9962 35 1 3.7472 0.3613 1.1355 36 1 2.8368 -0.4831 3.4080 37 1 5.8070 -0.1277 2.7988 38 1 4.6489 1.1930 3.0909 39 1 5.9740 0.5665 5.1413 40 1 4.2159 0.3680 5.3577 41 1 6.7759 0.6811 7.8208 42 1 3.3494 -2.2199 5.1822 43 1 4.6418 -3.4058 4.8722 44 1 3.2929 -2.8569 2.8163 45 1 5.0219 -2.4714 2.6395 46 1 3.2128 -3.4602 1.0532 47 1 2.8621 -3.8939 -0.6235 48 1 4.9168 -1.9397 0.4130 49 1 5.1740 -3.4180 -0.5370 50 1 5.4271 -1.4560 -1.9790 51 1 3.9631 -2.3564 -2.4507 52 1 4.0015 0.0572 -0.5818 53 1 3.5615 0.1137 -2.3061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924999358.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:51:09 Heat of formation + Delta-G solvation = 36.663686 kcal Electronic energy + Delta-G solvation = -28002.715014 eV Core-core repulsion = 24681.851569 eV Total energy + Delta-G solvation = -3320.863445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 306.237 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42489 -37.59057 -35.13414 -34.18156 -31.76348 -31.50974 -29.85345 -29.57167 -28.91022 -27.41009 -25.15504 -24.04167 -22.97801 -22.20106 -21.72033 -20.70376 -19.23759 -19.00204 -17.64900 -16.62819 -16.02275 -15.63465 -15.06291 -14.77993 -14.22739 -13.97142 -13.88156 -13.49399 -13.42546 -13.30652 -13.19335 -12.95884 -12.66628 -12.40468 -12.36061 -12.12248 -12.08694 -11.87384 -11.46127 -11.25779 -11.13754 -11.02504 -10.80681 -10.80144 -10.69477 -10.49042 -10.35240 -10.14736 -10.13236 -9.93032 -9.87304 -9.73317 -9.53056 -9.37065 -9.33173 -8.43316 -7.89803 -6.62962 -5.75591 -3.16473 3.39274 3.47409 3.49937 4.22246 4.43575 4.50347 4.53323 4.69445 4.89564 5.09379 5.23746 5.27840 5.39387 5.44647 5.47201 5.48598 5.51910 5.57509 5.61530 5.63071 5.64496 5.75729 5.76560 5.78488 5.85499 5.95222 5.99856 6.01009 6.02811 6.06303 6.12510 6.18402 6.25206 6.36139 6.40518 6.45665 6.50626 6.55163 6.62009 6.66381 6.71383 6.73755 6.74721 6.88480 7.00074 7.11300 7.41134 7.50415 7.67853 7.71819 7.83990 8.48914 9.25430 9.89526 10.46382 11.33104 Molecular weight = 306.24amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.003856 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.853701 B = 7260.156568 C = 7646.078962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C -0.152 4.152 4 C 0.080 3.920 5 H 0.062 0.938 6 N -0.660 5.660 7 C 0.096 3.904 8 C -0.141 4.141 9 C 0.175 3.825 10 N -0.591 5.591 11 C -0.248 4.248 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.904 5.904 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.291 1.291 19 C 0.144 3.856 20 C -0.114 4.114 21 C -0.091 4.091 22 H 0.072 0.928 23 C -0.087 4.087 24 C -0.117 4.117 25 C -0.109 4.109 26 C -0.104 4.104 27 C -0.085 4.085 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.338 0.662 36 H 0.034 0.966 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.014 0.986 41 H 0.252 0.748 42 H 0.012 0.988 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.036 0.964 48 H 0.097 0.903 49 H 0.042 0.958 50 H 0.053 0.947 51 H 0.047 0.953 52 H 0.086 0.914 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.950 -0.036 -17.685 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.103 4.103 3 C -0.209 4.209 4 C -0.031 4.031 5 H 0.080 0.920 6 N -0.293 5.293 7 C -0.013 4.013 8 C -0.180 4.180 9 C 0.048 3.952 10 N -0.313 5.313 11 C -0.378 4.378 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.549 5.549 15 Si 0.730 3.270 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.218 1.218 19 C 0.017 3.983 20 C -0.154 4.154 21 C -0.110 4.110 22 H 0.091 0.909 23 C -0.125 4.125 24 C -0.154 4.154 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.104 4.104 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.161 0.839 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.032 0.968 41 H 0.062 0.938 42 H 0.030 0.970 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.055 0.945 48 H 0.115 0.885 49 H 0.060 0.940 50 H 0.072 0.928 51 H 0.066 0.934 52 H 0.104 0.896 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.623 -0.532 -17.699 20.153 hybrid contribution 0.178 0.626 0.678 0.940 sum -9.445 0.094 -17.020 19.466 Atomic orbital electron populations 1.21549 0.93418 1.01795 1.01524 1.22451 0.95305 0.94513 0.98046 1.21911 1.01761 0.95550 1.01632 1.22723 0.89411 0.95629 0.95288 0.92024 1.60732 1.21152 1.31025 1.16394 1.21563 0.97121 0.96949 0.85625 1.22392 0.97761 0.96401 1.01473 1.20718 1.00609 0.85971 0.87901 1.44040 1.23071 1.01824 1.62409 1.19240 1.03252 0.99969 1.15324 0.91696 1.25010 0.99162 0.98767 0.96795 1.70048 1.35580 1.16253 1.33026 0.86256 0.84978 0.77678 0.78092 1.20250 1.21615 1.21818 1.20935 0.92123 0.93858 0.91410 1.22059 1.00501 0.94619 0.98224 1.21705 0.98426 0.94533 0.96378 0.90926 1.20328 0.94653 0.96445 1.01047 1.21207 0.96426 0.99360 0.98398 1.21281 0.98788 0.96725 0.97826 1.21557 0.93985 0.97647 1.00937 1.22251 0.96464 0.95879 0.95763 0.91551 0.92604 0.92567 0.92437 0.90901 0.92607 0.92739 0.83887 0.94817 0.91908 0.93886 0.89451 0.96764 0.93790 0.97011 0.92921 0.93353 0.91774 0.91823 0.94507 0.88502 0.93972 0.92801 0.93421 0.89588 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.09 37.16 0.34 -0.81 16 2 C -0.10 -1.04 1.35 -153.35 -0.21 -1.25 16 3 C -0.15 -1.49 7.79 37.16 0.29 -1.20 16 4 C 0.08 0.97 3.43 -67.10 -0.23 0.74 16 5 H 0.06 0.83 7.40 -51.93 -0.38 0.44 16 6 N -0.66 -8.69 2.28 -99.05 -0.23 -8.92 16 7 C 0.10 1.58 2.39 -67.67 -0.16 1.42 16 8 C -0.14 -2.62 5.37 -26.61 -0.14 -2.76 16 9 C 0.17 4.14 5.31 -3.71 -0.02 4.12 16 10 N -0.59 -14.81 2.99 -172.32 -0.52 -15.33 16 11 C -0.25 -6.86 9.59 -15.06 -0.14 -7.00 16 12 H 0.07 1.78 7.89 -52.48 -0.41 1.36 16 13 C 0.00 0.02 4.90 -17.43 -0.09 -0.06 16 14 N -0.90 -26.36 11.21 55.49 0.62 -25.73 16 15 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 19 C 0.14 3.05 6.51 -3.71 -0.02 3.03 16 20 C -0.11 -2.00 5.08 -26.61 -0.14 -2.13 16 21 C -0.09 -1.03 3.41 -92.05 -0.31 -1.34 16 22 H 0.07 0.79 7.18 -51.92 -0.37 0.41 16 23 C -0.09 -1.06 5.30 -28.67 -0.15 -1.21 16 24 C -0.12 -1.45 5.44 -27.63 -0.15 -1.60 16 25 C -0.11 -1.20 5.90 -26.95 -0.16 -1.36 16 26 C -0.10 -1.09 4.26 -26.74 -0.11 -1.21 16 27 C -0.09 -0.88 3.81 -90.14 -0.34 -1.23 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.51 7.00 -51.93 -0.36 0.15 16 32 H 0.07 0.71 4.48 -51.93 -0.23 0.48 16 33 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.34 4.30 4.61 -39.30 -0.18 4.12 16 36 H 0.03 0.59 7.51 -51.93 -0.39 0.20 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.09 2.33 6.05 -51.93 -0.31 2.02 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.05 1.11 7.94 -51.93 -0.41 0.69 16 44 H 0.05 0.77 6.27 -51.93 -0.33 0.45 16 45 H 0.06 1.19 7.74 -51.93 -0.40 0.79 16 46 H 0.06 0.85 5.83 -51.93 -0.30 0.55 16 47 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 48 H 0.10 1.39 5.74 -51.92 -0.30 1.09 16 49 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.09 0.96 3.61 -51.93 -0.19 0.78 16 53 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -27.87 367.80 -10.99 -38.86 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -9.63 Total: 2.65 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.76 Total: -13.86 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.12 Total: -49.98 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.87 -10.99 -38.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924999358.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.527 kcal (2) G-P(sol) polarization free energy of solvation -27.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds