Wall clock time and date at job start Fri Apr 10 2020 21:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.94880 * 2 1 4 4 C 1.53958 * 113.66414 * 131.41630 * 2 1 3 5 5 H 1.08999 * 113.84641 * 333.55135 * 4 2 1 6 6 N 1.46902 * 113.74508 * 202.23851 * 4 2 1 7 7 C 1.46897 * 111.00045 * 140.65538 * 6 4 2 8 8 C 1.53043 * 109.45977 * 204.61955 * 7 6 4 9 9 C 1.53192 * 109.31210 * 178.61288 * 8 7 6 10 10 N 1.46928 * 108.77875 * 54.63323 * 9 8 7 11 11 C 1.36934 * 120.63089 * 126.39114 * 10 9 8 12 12 H 1.08008 * 120.00004 * 207.70576 * 11 10 9 13 13 C 1.38812 * 120.00215 * 27.70084 * 11 10 9 14 14 N 1.31614 * 119.99888 * 17.63443 * 13 11 10 15 15 Si 1.86793 * 120.00136 * 197.62800 * 13 11 10 16 16 H 1.48499 * 109.47430 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47092 * 120.00354 * 15 13 11 18 18 H 1.48501 * 109.47417 * 240.00040 * 15 13 11 19 19 C 1.46925 * 118.73833 * 306.39246 * 10 9 8 20 20 C 1.53045 * 109.46586 * 84.54914 * 7 6 4 21 21 C 1.53220 * 86.25317 * 87.90032 * 4 2 1 22 22 H 1.09007 * 111.34780 * 275.49372 * 21 4 2 23 23 C 1.50507 * 115.71416 * 147.24234 * 21 4 2 24 24 C 1.51623 * 114.39579 * 290.09069 * 23 21 4 25 25 C 1.52602 * 111.07642 * 313.08926 * 24 23 21 26 26 C 1.52981 * 108.83277 * 63.69577 * 25 24 23 27 27 C 1.52535 * 87.67992 * 26.88785 * 21 4 2 28 28 H 1.08999 * 113.96066 * 217.49044 * 27 21 4 29 29 H 1.09006 * 109.47166 * 308.09012 * 1 2 3 30 30 H 1.09000 * 109.47429 * 68.09057 * 1 2 3 31 31 H 1.09003 * 109.47442 * 188.09279 * 1 2 3 32 32 H 1.09004 * 109.46861 * 195.78576 * 3 2 1 33 33 H 1.08992 * 109.47307 * 315.79049 * 3 2 1 34 34 H 1.08997 * 109.46905 * 75.79638 * 3 2 1 35 35 H 1.00893 * 111.00324 * 16.69428 * 6 4 2 36 36 H 1.09003 * 109.44756 * 324.58208 * 7 6 4 37 37 H 1.09003 * 109.49270 * 298.55898 * 8 7 6 38 38 H 1.08998 * 109.50089 * 58.65993 * 8 7 6 39 39 H 1.09004 * 109.58915 * 174.42138 * 9 8 7 40 40 H 1.09002 * 109.58926 * 294.84184 * 9 8 7 41 41 H 0.97002 * 120.00080 * 179.97438 * 14 13 11 42 42 H 1.09001 * 109.58591 * 293.82160 * 19 10 9 43 43 H 1.08995 * 109.70828 * 173.46402 * 19 10 9 44 44 H 1.09000 * 109.49115 * 301.33635 * 20 7 6 45 45 H 1.08993 * 109.49528 * 61.39924 * 20 7 6 46 46 H 1.09003 * 108.50233 * 51.36501 * 23 21 4 47 47 H 1.09007 * 108.50082 * 168.81814 * 23 21 4 48 48 H 1.09007 * 109.15787 * 73.49709 * 24 23 21 49 49 H 1.09001 * 109.15962 * 192.67600 * 24 23 21 50 50 H 1.09001 * 109.57897 * 183.50010 * 25 24 23 51 51 H 1.08999 * 109.57530 * 303.88753 * 25 24 23 52 52 H 1.08996 * 109.51918 * 56.26033 * 26 25 24 53 53 H 1.09001 * 109.51461 * 176.36857 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1266 1.4089 0.0000 4 6 2.1480 -0.9328 1.0575 5 1 1.5073 -1.1038 1.9226 6 7 3.5254 -0.5791 1.4258 7 6 3.7452 -0.7506 2.8681 8 6 4.8926 0.1556 3.3202 9 6 5.0961 0.0000 4.8306 10 7 5.2946 -1.4232 5.1369 11 6 6.3903 -1.8381 5.8456 12 1 6.7815 -2.8344 5.7009 13 6 6.9984 -0.9783 6.7499 14 7 6.3512 0.0805 7.1886 15 14 8.7352 -1.3239 7.3444 16 1 9.2391 -2.5661 6.7055 17 1 9.6185 -0.1871 6.9801 18 1 8.7290 -1.4929 8.8197 19 6 4.2950 -2.3927 4.6683 20 6 4.1005 -2.2104 3.1598 21 6 2.0565 -2.0328 -0.0052 22 1 1.0690 -2.4945 -0.0144 23 6 3.1433 -3.0732 0.0366 24 6 4.5106 -2.5675 -0.3802 25 6 4.4257 -1.7543 -1.6686 26 6 3.5764 -0.5082 -1.4111 27 6 2.1496 -0.9353 -1.0603 28 1 1.5272 -1.1108 -1.9378 29 1 -0.3634 0.6340 0.8089 30 1 -0.3634 0.3835 -0.9534 31 1 -0.3634 -1.0174 0.1447 32 1 3.1789 1.3578 -0.2796 33 1 1.5900 2.0307 -0.7165 34 1 2.0360 1.8417 0.9962 35 1 3.7472 0.3613 1.1355 36 1 2.8368 -0.4831 3.4080 37 1 5.8070 -0.1277 2.7988 38 1 4.6489 1.1930 3.0909 39 1 5.9740 0.5665 5.1413 40 1 4.2159 0.3680 5.3577 41 1 6.7759 0.6811 7.8208 42 1 3.3494 -2.2199 5.1822 43 1 4.6418 -3.4058 4.8722 44 1 3.2929 -2.8569 2.8163 45 1 5.0219 -2.4714 2.6395 46 1 3.2128 -3.4602 1.0532 47 1 2.8621 -3.8939 -0.6235 48 1 4.9168 -1.9397 0.4130 49 1 5.1740 -3.4180 -0.5370 50 1 5.4271 -1.4560 -1.9790 51 1 3.9631 -2.3564 -2.4507 52 1 4.0015 0.0572 -0.5818 53 1 3.5615 0.1137 -2.3061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924999358.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:51:09 Heat of formation + Delta-G solvation = 24.589571 kcal Electronic energy + Delta-G solvation = -28003.238587 eV Core-core repulsion = 24681.851569 eV Total energy + Delta-G solvation = -3321.387018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 306.237 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.33934 -39.22272 -36.14210 -35.71265 -33.51174 -32.50402 -31.48998 -30.73916 -30.22561 -28.23037 -26.79302 -25.31706 -24.01354 -23.69017 -23.21477 -21.87133 -20.76201 -19.96428 -18.93876 -18.29045 -17.11346 -16.74403 -16.64789 -15.93660 -15.66170 -15.32622 -15.31479 -15.03672 -14.58104 -14.41778 -14.33438 -14.17151 -14.00402 -13.71445 -13.38028 -13.11941 -13.09202 -12.99190 -12.90480 -12.73159 -12.59372 -12.41084 -12.35400 -12.09101 -11.99963 -11.86291 -11.76786 -11.66193 -11.44052 -11.35987 -11.17128 -10.94856 -10.74325 -10.54266 -10.52564 -10.32689 -9.01275 -8.68081 -7.87388 -5.31634 1.45677 1.47788 1.58517 2.51697 3.12710 3.29793 3.55644 3.64082 3.70130 3.82312 3.97510 4.10437 4.16669 4.30188 4.38533 4.41022 4.48478 4.55165 4.59398 4.60211 4.70673 4.73951 4.75899 4.79376 4.81501 4.85341 4.91592 4.99534 5.01093 5.03532 5.08747 5.12585 5.14727 5.18766 5.23709 5.24412 5.27190 5.33538 5.38601 5.43156 5.51603 5.54612 5.57865 5.66034 5.67334 5.70854 5.78508 5.79400 6.01059 6.33711 6.40013 6.60129 7.15527 7.87066 8.38914 9.19242 Molecular weight = 306.24amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.003856 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.853701 B = 7260.156568 C = 7646.078962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 C -0.151 4.151 4 C 0.071 3.929 5 H 0.049 0.951 6 N -0.648 5.648 7 C 0.110 3.890 8 C -0.125 4.125 9 C 0.181 3.819 10 N -0.608 5.608 11 C -0.261 4.261 12 H 0.064 0.936 13 C -0.049 4.049 14 N -0.936 5.936 15 Si 0.965 3.035 16 H -0.268 1.268 17 H -0.289 1.289 18 H -0.292 1.292 19 C 0.140 3.860 20 C -0.096 4.096 21 C -0.090 4.090 22 H 0.081 0.919 23 C -0.085 4.085 24 C -0.115 4.115 25 C -0.106 4.106 26 C -0.103 4.103 27 C -0.079 4.079 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.344 0.656 36 H 0.024 0.976 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.054 0.946 40 H -0.009 1.009 41 H 0.249 0.751 42 H 0.006 0.994 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.047 0.953 47 H 0.044 0.956 48 H 0.078 0.922 49 H 0.037 0.963 50 H 0.055 0.945 51 H 0.054 0.946 52 H 0.078 0.922 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 -0.171 -20.038 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.094 4.094 3 C -0.208 4.208 4 C -0.039 4.039 5 H 0.067 0.933 6 N -0.282 5.282 7 C 0.000 4.000 8 C -0.164 4.164 9 C 0.055 3.945 10 N -0.331 5.331 11 C -0.391 4.391 12 H 0.082 0.918 13 C -0.245 4.245 14 N -0.582 5.582 15 Si 0.793 3.207 16 H -0.192 1.192 17 H -0.216 1.216 18 H -0.219 1.219 19 C 0.014 3.986 20 C -0.135 4.135 21 C -0.110 4.110 22 H 0.099 0.901 23 C -0.123 4.123 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.097 4.097 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.168 0.832 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.009 0.991 41 H 0.059 0.941 42 H 0.024 0.976 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.056 0.944 50 H 0.074 0.926 51 H 0.072 0.928 52 H 0.096 0.904 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.272 -0.682 -20.081 22.566 hybrid contribution 0.323 0.627 1.418 1.584 sum -9.949 -0.055 -18.663 21.149 Atomic orbital electron populations 1.21554 0.92411 1.02007 1.02208 1.22416 0.96003 0.94359 0.96636 1.21911 1.01993 0.95389 1.01553 1.22793 0.88395 0.97246 0.95501 0.93309 1.60665 1.22385 1.31500 1.13627 1.21271 0.95587 0.95499 0.87616 1.22137 0.98515 0.98327 0.97447 1.20525 0.97963 0.85047 0.90996 1.44296 1.23498 1.02812 1.62539 1.19545 1.04194 1.00050 1.15351 0.91816 1.25748 1.02635 0.98807 0.97276 1.70195 1.36997 1.17217 1.33786 0.85241 0.80458 0.77708 0.77259 1.19189 1.21560 1.21920 1.21079 0.90847 0.92944 0.93763 1.21817 1.00765 0.95863 0.95066 1.21728 0.98515 0.94340 0.96378 0.90067 1.20297 0.94814 0.96964 1.00223 1.21159 0.96403 0.99077 0.98621 1.21253 0.99187 0.96830 0.97071 1.21547 0.93843 0.97406 1.01217 1.22222 0.96546 0.95109 0.95866 0.90455 0.92817 0.91235 0.92278 0.90839 0.91333 0.93549 0.83248 0.95785 0.92520 0.91776 0.92789 0.99059 0.94144 0.97569 0.93108 0.91442 0.92591 0.93394 0.93752 0.90397 0.94432 0.92633 0.92762 0.90384 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.09 71.98 0.65 -1.27 16 2 C -0.09 -1.65 1.35 -51.43 -0.07 -1.72 16 3 C -0.15 -2.59 7.79 71.98 0.56 -2.03 16 4 C 0.07 1.58 3.43 45.31 0.16 1.74 16 5 H 0.05 1.24 7.40 -2.39 -0.02 1.22 16 6 N -0.65 -16.20 2.28 -467.28 -1.07 -17.27 16 7 C 0.11 3.54 2.39 44.95 0.11 3.65 16 8 C -0.12 -4.65 5.37 30.67 0.16 -4.48 16 9 C 0.18 8.86 5.31 86.36 0.46 9.32 16 10 N -0.61 -31.24 2.99 -699.09 -2.09 -33.34 16 11 C -0.26 -14.70 9.59 84.03 0.81 -13.90 16 12 H 0.06 3.53 7.89 -2.91 -0.02 3.50 16 13 C -0.05 -2.81 4.90 84.86 0.42 -2.39 16 14 N -0.94 -56.11 11.21 21.65 0.24 -55.86 16 15 Si 0.97 45.53 29.59 68.60 2.03 47.56 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 19 C 0.14 6.01 6.51 86.36 0.56 6.57 16 20 C -0.10 -3.31 5.08 30.67 0.16 -3.15 16 21 C -0.09 -1.83 3.41 -11.72 -0.04 -1.87 16 22 H 0.08 1.54 7.18 -2.38 -0.02 1.52 16 23 C -0.09 -1.92 5.30 29.34 0.16 -1.77 16 24 C -0.12 -2.69 5.44 30.01 0.16 -2.53 16 25 C -0.11 -2.09 5.90 30.46 0.18 -1.91 16 26 C -0.10 -1.88 4.26 30.59 0.13 -1.75 16 27 C -0.08 -1.40 3.81 -10.48 -0.04 -1.44 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.90 7.00 -2.39 -0.02 0.88 16 32 H 0.07 1.25 4.48 -2.38 -0.01 1.24 16 33 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.34 8.15 4.61 -89.70 -0.41 7.74 16 36 H 0.02 0.84 7.51 -2.39 -0.02 0.82 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 38 H 0.06 2.10 8.10 -2.39 -0.02 2.09 16 39 H 0.05 2.99 6.05 -2.38 -0.01 2.98 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 42 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.05 2.16 7.94 -2.39 -0.02 2.14 16 44 H 0.07 2.09 6.27 -2.39 -0.01 2.08 16 45 H 0.06 2.05 7.74 -2.39 -0.02 2.04 16 46 H 0.05 1.22 5.83 -2.39 -0.01 1.21 16 47 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 48 H 0.08 2.14 5.74 -2.38 -0.01 2.13 16 49 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.08 1.56 3.61 -2.39 -0.01 1.55 16 53 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -60.75 367.80 4.09 -56.66 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.46 Total: 21.18 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 4.52 Total: -18.93 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -2.92 Total: -106.47 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -60.75 4.09 -56.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924999358.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.250 kcal (2) G-P(sol) polarization free energy of solvation -60.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds