Wall clock time and date at job start Fri Apr 10 2020 21:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 112.95038 * 2 1 4 4 C 1.54578 * 113.66347 * 228.49458 * 2 1 3 5 5 H 1.08999 * 114.08392 * 26.83098 * 4 2 1 6 6 C 1.53012 * 111.17243 * 157.13641 * 4 2 1 7 7 C 1.52977 * 109.20438 * 144.08295 * 6 4 2 8 8 C 1.52602 * 108.82981 * 296.32688 * 7 6 4 9 9 C 1.51631 * 111.07205 * 63.70866 * 8 7 6 10 10 C 1.50509 * 114.39607 * 313.09520 * 9 8 7 11 11 H 1.08997 * 110.66396 * 162.23021 * 10 9 8 12 12 C 1.53223 * 115.71651 * 290.06746 * 10 9 8 13 13 H 1.09005 * 113.74804 * 32.78770 * 12 10 9 14 14 N 1.46904 * 113.74850 * 261.57209 * 12 10 9 15 15 C 1.46899 * 110.99748 * 106.27198 * 14 12 10 16 16 C 1.53040 * 109.46014 * 205.00021 * 15 14 12 17 17 C 1.53198 * 109.31465 * 178.61706 * 16 15 14 18 18 N 1.46918 * 108.77537 * 54.63578 * 17 16 15 19 19 C 1.36936 * 120.63444 * 126.36931 * 18 17 16 20 20 H 1.08005 * 119.99389 * 334.70862 * 19 18 17 21 21 C 1.38803 * 120.00575 * 154.43651 * 19 18 17 22 22 N 1.31624 * 119.99877 * 340.74335 * 21 19 18 23 23 Si 1.86801 * 120.00309 * 160.74787 * 21 19 18 24 24 H 1.48498 * 109.46999 * 59.99997 * 23 21 19 25 25 H 1.48505 * 109.46941 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46878 * 299.99845 * 23 21 19 27 27 C 1.46934 * 118.74133 * 306.64541 * 18 17 16 28 28 C 1.52762 * 109.00714 * 53.30729 * 27 18 17 29 29 H 1.08994 * 109.47135 * 308.09176 * 1 2 3 30 30 H 1.09003 * 109.46937 * 68.08688 * 1 2 3 31 31 H 1.09002 * 109.46904 * 188.08721 * 1 2 3 32 32 H 1.08999 * 109.47008 * 183.46020 * 3 2 1 33 33 H 1.09001 * 109.46831 * 303.46717 * 3 2 1 34 34 H 1.09004 * 109.46769 * 63.46385 * 3 2 1 35 35 H 1.09001 * 109.51288 * 264.00500 * 6 4 2 36 36 H 1.09003 * 109.51118 * 24.16286 * 6 4 2 37 37 H 1.09003 * 109.58100 * 56.13664 * 7 6 4 38 38 H 1.09010 * 109.57805 * 176.39527 * 7 6 4 39 39 H 1.08999 * 109.15656 * 184.11203 * 8 7 6 40 40 H 1.08998 * 109.15989 * 303.34857 * 8 7 6 41 41 H 1.08996 * 108.50038 * 191.82650 * 9 8 7 42 42 H 1.09001 * 108.49858 * 74.36862 * 9 8 7 43 43 H 1.00893 * 111.00074 * 230.22541 * 14 12 10 44 44 H 1.08999 * 109.45262 * 324.96761 * 15 14 12 45 45 H 1.09000 * 109.49509 * 58.66508 * 16 15 14 46 46 H 1.09001 * 109.52369 * 298.58792 * 16 15 14 47 47 H 1.09002 * 109.58419 * 294.84631 * 17 16 15 48 48 H 1.09002 * 109.70391 * 174.49310 * 17 16 15 49 49 H 0.96997 * 120.00318 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.58676 * 173.14405 * 27 18 17 51 51 H 1.08997 * 109.58246 * 293.57098 * 27 18 17 52 52 H 1.08997 * 109.56707 * 185.55390 * 28 27 18 53 53 H 1.09000 * 109.38438 * 65.51678 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1266 1.4089 0.0000 4 6 2.1504 -0.9382 -1.0603 5 1 1.5157 -1.1080 -1.9299 6 6 3.5764 -0.5088 -1.4116 7 6 4.4282 -1.7535 -1.6672 8 6 4.5149 -2.5644 -0.3774 9 6 3.1486 -3.0725 0.0401 10 6 2.0595 -2.0346 -0.0037 11 1 1.0774 -2.5074 -0.0037 12 6 2.1480 -0.9328 1.0575 13 1 3.1693 -0.6691 1.3323 14 7 1.2825 -1.1622 2.2221 15 6 2.0718 -1.5688 3.3925 16 6 1.1887 -2.3745 4.3480 17 6 2.0237 -2.8262 5.5504 18 7 2.6520 -1.6462 6.1598 19 6 2.4969 -1.3843 7.4948 20 1 1.6318 -1.7591 8.0217 21 6 3.4542 -0.6418 8.1724 22 7 4.6633 -0.5111 7.6689 23 14 3.0267 0.1716 9.7987 24 1 2.6177 -0.8663 10.7789 25 1 4.2133 0.9004 10.3146 26 1 1.9090 1.1280 9.5950 27 6 3.4451 -0.7490 5.3082 28 6 2.5987 -0.3237 4.1097 29 1 -0.3633 0.6340 0.8087 30 1 -0.3633 0.3835 -0.9535 31 1 -0.3633 -1.0175 0.1446 32 1 3.2129 1.3435 -0.0620 33 1 1.7464 1.9645 -0.8573 34 1 1.8455 1.9225 0.9195 35 1 3.5596 0.1113 -2.3078 36 1 4.0003 0.0587 -0.5830 37 1 3.9669 -2.3578 -2.4483 38 1 5.4284 -1.4537 -1.9803 39 1 5.1801 -3.4138 -0.5329 40 1 4.9189 -1.9343 0.4149 41 1 3.2187 -3.4574 1.0574 42 1 2.8693 -3.8948 -0.6186 43 1 0.7274 -0.3449 2.4266 44 1 2.9114 -2.1837 3.0683 45 1 0.7949 -3.2488 3.8295 46 1 0.3622 -1.7527 4.6920 47 1 2.7954 -3.5210 5.2190 48 1 1.3804 -3.3161 6.2814 49 1 5.3322 0.0080 8.1422 50 1 3.7373 0.1326 5.8787 51 1 4.3350 -1.2710 4.9567 52 1 3.2085 0.2618 3.4216 53 1 1.7593 0.2796 4.4554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924999359.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:51:14 Heat of formation + Delta-G solvation = 18.959487 kcal Electronic energy + Delta-G solvation = -27489.809626 eV Core-core repulsion = 24168.178469 eV Total energy + Delta-G solvation = -3321.631156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 306.237 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.22382 -37.75324 -35.51141 -34.14227 -32.02820 -31.15265 -29.79161 -29.63309 -28.85927 -27.53038 -25.20804 -24.06001 -22.88672 -22.12024 -21.74824 -21.14652 -19.39519 -19.09671 -17.40199 -16.75049 -16.17864 -15.30933 -15.01260 -14.74905 -14.31583 -14.10384 -13.97646 -13.83652 -13.50868 -13.35003 -13.07601 -12.96557 -12.73878 -12.43934 -12.35911 -12.16911 -12.01721 -11.96851 -11.57773 -11.42658 -11.26387 -11.06784 -10.95806 -10.82710 -10.67269 -10.66871 -10.47073 -10.20234 -10.17940 -10.03333 -9.98060 -9.77626 -9.68762 -9.53804 -9.34608 -8.44919 -7.90633 -6.65964 -5.75790 -3.14628 3.40221 3.45910 3.47595 4.30386 4.44710 4.47722 4.53014 4.71507 4.75350 4.98033 5.06043 5.09986 5.27980 5.37235 5.37350 5.40819 5.49728 5.52845 5.53592 5.59960 5.63066 5.70048 5.72188 5.76023 5.83131 5.86725 5.89507 5.96467 6.01301 6.01863 6.03949 6.12474 6.19650 6.21608 6.25981 6.32056 6.33453 6.38805 6.52273 6.59778 6.61920 6.65772 6.73739 6.76342 6.88184 7.05954 7.38503 7.54630 7.66444 7.77611 7.82842 8.47253 9.24588 9.89558 10.45423 11.32758 Molecular weight = 306.24amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.003566 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.636337 B = 7850.098327 C = 8035.943526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.094 4.094 5 H 0.075 0.925 6 C -0.107 4.107 7 C -0.116 4.116 8 C -0.117 4.117 9 C -0.105 4.105 10 C -0.085 4.085 11 H 0.087 0.913 12 C 0.077 3.923 13 H 0.071 0.929 14 N -0.674 5.674 15 C 0.096 3.904 16 C -0.116 4.116 17 C 0.145 3.855 18 N -0.592 5.592 19 C -0.250 4.250 20 H 0.066 0.934 21 C 0.000 4.000 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.174 3.826 28 C -0.165 4.165 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.336 0.664 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.015 0.985 48 H 0.053 0.947 49 H 0.253 0.747 50 H 0.087 0.913 51 H 0.014 0.986 52 H 0.042 0.958 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.235 -0.081 -20.226 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.090 4.090 3 C -0.201 4.201 4 C -0.113 4.113 5 H 0.093 0.907 6 C -0.144 4.144 7 C -0.153 4.153 8 C -0.155 4.155 9 C -0.143 4.143 10 C -0.104 4.104 11 H 0.105 0.895 12 C -0.033 4.033 13 H 0.088 0.912 14 N -0.304 5.304 15 C -0.013 4.013 16 C -0.156 4.156 17 C 0.018 3.982 18 N -0.315 5.315 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.198 4.198 22 N -0.548 5.548 23 Si 0.730 3.270 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.048 3.952 28 C -0.206 4.206 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.155 0.845 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.105 0.895 51 H 0.032 0.968 52 H 0.061 0.939 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.258 -0.659 -20.300 20.753 hybrid contribution 0.306 1.326 1.147 1.779 sum -3.952 0.667 -19.154 19.568 Atomic orbital electron populations 1.21462 0.92930 1.02625 1.00888 1.22322 0.95839 0.94009 0.96838 1.21880 1.01075 0.95698 1.01448 1.22283 0.96104 0.96475 0.96432 0.90676 1.21533 0.94226 0.97320 1.01336 1.21383 0.99366 0.96858 0.97733 1.21146 0.97208 0.99640 0.97464 1.20550 0.94182 0.97986 1.01575 1.21724 0.99323 0.94182 0.95215 0.89452 1.23045 0.95633 0.95205 0.89420 0.91164 1.60830 1.24661 1.40033 1.04852 1.21523 0.94844 0.95956 0.88988 1.21959 0.98435 0.98860 0.96344 1.20917 0.94427 0.89728 0.93120 1.44055 1.59239 1.22953 1.05240 1.19178 1.02724 1.31027 0.85072 0.91662 1.24953 0.94500 1.02520 0.97815 1.70053 1.01846 1.42884 1.40048 0.86399 0.77205 0.79686 0.83712 1.20903 1.21680 1.21135 1.20609 0.90427 0.95520 0.88675 1.22767 1.00803 0.97357 0.99625 0.92625 0.93116 0.91439 0.91861 0.92819 0.92790 0.92189 0.91025 0.92205 0.92290 0.92321 0.92255 0.91797 0.92920 0.84477 0.91548 0.92746 0.92666 0.96713 0.92852 0.93692 0.89520 0.96793 0.93943 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.07 37.16 0.30 -0.92 16 2 C -0.09 -0.93 1.23 -153.21 -0.19 -1.12 16 3 C -0.14 -1.46 8.68 37.16 0.32 -1.14 16 4 C -0.09 -0.94 3.83 -90.02 -0.34 -1.28 16 5 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 6 C -0.11 -1.00 4.59 -26.74 -0.12 -1.13 16 7 C -0.12 -1.07 5.90 -26.95 -0.16 -1.22 16 8 C -0.12 -1.23 5.75 -27.63 -0.16 -1.39 16 9 C -0.11 -1.19 5.50 -28.67 -0.16 -1.35 16 10 C -0.09 -0.96 3.19 -92.02 -0.29 -1.26 16 11 H 0.09 1.06 7.23 -51.93 -0.38 0.68 16 12 C 0.08 0.96 2.43 -67.10 -0.16 0.80 16 13 H 0.07 1.00 6.72 -51.93 -0.35 0.65 16 14 N -0.67 -9.46 5.73 -99.05 -0.57 -10.03 16 15 C 0.10 1.64 2.29 -67.67 -0.16 1.48 16 16 C -0.12 -2.09 5.69 -26.61 -0.15 -2.25 16 17 C 0.14 3.11 6.52 -3.71 -0.02 3.09 16 18 N -0.59 -15.06 3.01 -172.58 -0.52 -15.58 16 19 C -0.25 -6.98 9.59 -15.06 -0.14 -7.13 16 20 H 0.07 1.79 7.89 -52.48 -0.41 1.37 16 21 C 0.00 0.01 4.88 -17.43 -0.09 -0.08 16 22 N -0.90 -26.53 11.17 55.49 0.62 -25.91 16 23 Si 0.90 21.93 29.60 -169.99 -5.03 16.90 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.17 4.21 5.31 -3.93 -0.02 4.19 16 28 C -0.16 -3.17 5.30 -26.83 -0.14 -3.31 16 29 H 0.05 0.56 7.71 -51.93 -0.40 0.16 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.72 6.96 -51.93 -0.36 0.36 16 32 H 0.06 0.64 5.51 -51.93 -0.29 0.35 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.73 5.09 -51.93 -0.26 0.47 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.69 7.94 -51.93 -0.41 0.28 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.34 4.71 7.33 -39.30 -0.29 4.43 16 44 H 0.07 1.20 7.85 -51.93 -0.41 0.79 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.05 1.13 7.92 -51.93 -0.41 0.71 16 49 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 50 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 51 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 52 H 0.04 0.76 7.69 -51.93 -0.40 0.36 16 53 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 381.81 15.07 5.75 5.75 Total: -1.00 -28.27 381.81 -11.59 -39.85 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -10.15 Total: 3.02 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.69 Total: -14.01 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.47 Total: -51.52 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.27 -11.59 -39.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924999359.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.813 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds