Wall clock time and date at job start Fri Apr 10 2020 21:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46834 * 2 1 4 4 N 1.46901 * 109.47240 * 185.03844 * 3 2 1 5 5 C 1.46897 * 111.00226 * 297.70098 * 4 3 2 6 6 C 1.53005 * 109.47022 * 294.10862 * 5 4 3 7 7 C 1.52995 * 117.52024 * 116.71111 * 6 5 4 8 8 C 1.52999 * 117.50006 * 185.34433 * 6 5 4 9 9 C 1.38577 * 110.99963 * 61.65006 * 4 3 2 10 10 N 1.31222 * 126.47548 * 253.30661 * 9 4 3 11 11 N 1.28529 * 109.86119 * 179.82272 * 10 9 4 12 12 C 1.30295 * 110.05266 * 0.44683 * 11 10 9 13 13 C 1.50702 * 126.34808 * 179.69779 * 12 11 10 14 14 C 1.52998 * 109.46830 * 270.04057 * 13 12 11 15 15 C 1.53002 * 109.46935 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46974 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00116 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99506 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00460 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99566 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47190 * 90.00055 * 20 18 16 22 22 H 1.48496 * 109.47214 * 210.00287 * 20 18 16 23 23 H 1.48499 * 109.47378 * 330.00280 * 20 18 16 24 24 N 1.36455 * 126.47080 * 73.60885 * 9 4 3 25 25 C 1.46496 * 127.14108 * 359.97438 * 24 9 4 26 26 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47330 * 299.99735 * 1 2 3 28 28 H 1.09000 * 109.47150 * 59.99922 * 1 2 3 29 29 H 1.08998 * 109.47330 * 240.00265 * 2 1 3 30 30 H 1.09000 * 109.47150 * 120.00078 * 2 1 3 31 31 H 1.09002 * 109.47349 * 65.04267 * 3 2 1 32 32 H 1.09000 * 109.47199 * 305.03654 * 3 2 1 33 33 H 1.08993 * 109.47588 * 174.10318 * 5 4 3 34 34 H 1.09008 * 109.47373 * 54.09856 * 5 4 3 35 35 H 1.09005 * 115.54191 * 331.01143 * 6 5 4 36 36 H 1.09001 * 117.49715 * 214.96481 * 7 6 5 37 37 H 1.08998 * 117.50272 * 359.97438 * 7 6 5 38 38 H 1.09004 * 117.49594 * 359.97244 * 8 6 5 39 39 H 1.09000 * 117.49784 * 144.99206 * 8 6 5 40 40 H 1.09005 * 109.47004 * 30.03931 * 13 12 11 41 41 H 1.08997 * 109.47599 * 150.03616 * 13 12 11 42 42 H 1.08992 * 109.47157 * 299.99442 * 14 13 12 43 43 H 1.09004 * 109.47384 * 60.00308 * 14 13 12 44 44 H 1.08996 * 109.47599 * 300.00080 * 15 14 13 45 45 H 1.09001 * 109.47155 * 60.00280 * 15 14 13 46 46 H 0.96999 * 120.00023 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.46840 * 92.28980 * 25 24 9 48 48 H 1.08995 * 109.47591 * 212.29507 * 25 24 9 49 49 H 1.09000 * 109.46939 * 332.30157 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5039 1.4444 -0.1216 5 6 4.1284 0.7723 1.0256 6 6 3.8644 1.5820 2.2967 7 6 3.0346 0.9189 3.3978 8 6 4.5406 1.1128 3.5865 9 6 3.9038 0.8643 -1.3149 10 7 4.4576 -0.3163 -1.4613 11 7 4.6952 -0.5360 -2.7052 12 6 4.3189 0.4868 -3.4193 13 6 4.4336 0.6219 -4.9159 14 6 5.7809 1.2550 -5.2690 15 6 5.8976 1.3916 -6.7884 16 6 7.2245 2.0158 -7.1362 17 1 7.9155 2.2874 -6.3520 18 6 7.5561 2.2400 -8.4556 19 7 6.7143 1.9096 -9.4106 20 14 9.2011 3.0130 -8.8868 21 1 10.2165 1.9453 -9.0717 22 1 9.0676 3.7922 -10.1438 23 1 9.6270 3.9161 -7.7876 24 7 3.8013 1.4152 -2.5591 25 6 3.2505 2.7286 -2.9022 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7522 1.9296 0.9317 32 1 1.6048 1.9817 -0.8414 33 1 5.2030 0.6950 0.8607 34 1 3.7050 -0.2261 1.1365 35 1 3.7440 2.6559 2.1534 36 1 2.3685 1.5564 3.9791 37 1 2.6762 -0.0945 3.2168 38 1 5.1731 0.2269 3.5295 39 1 4.8650 1.8780 4.2917 40 1 4.3635 -0.3637 -5.3761 41 1 3.6268 1.2541 -5.2866 42 1 5.8510 2.2406 -4.8088 43 1 6.5878 0.6227 -4.8984 44 1 5.8277 0.4059 -7.2483 45 1 5.0908 2.0237 -7.1594 46 1 6.9475 2.0677 -10.3387 47 1 4.0529 3.4662 -2.9181 48 1 2.7815 2.6805 -3.8849 49 1 2.5073 3.0164 -2.1586 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121305670.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:52:21 Heat of formation + Delta-G solvation = 90.739266 kcal Electronic energy + Delta-G solvation = -25470.979042 eV Core-core repulsion = 22048.920147 eV Total energy + Delta-G solvation = -3422.058895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.212 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.86486 -39.18550 -36.72137 -35.24280 -34.40345 -33.29784 -32.32195 -29.73640 -27.73902 -27.65075 -26.95599 -25.16807 -23.75491 -22.70474 -22.32576 -21.33333 -20.66952 -20.09176 -19.85371 -17.20756 -16.90605 -16.32476 -16.15002 -15.92407 -15.12808 -14.82803 -14.61606 -14.42482 -14.16078 -13.91955 -13.77836 -13.33555 -13.01947 -12.91854 -12.48099 -12.33652 -12.18360 -11.96531 -11.87992 -11.72277 -11.64348 -11.50821 -11.33071 -10.99945 -10.86676 -10.78933 -10.69832 -10.57112 -10.43946 -10.19935 -10.00864 -9.75450 -9.59840 -9.34110 -9.10751 -8.35786 -8.21633 -6.01100 -4.03175 1.89470 2.28828 3.02611 3.32346 3.38509 3.41237 3.42037 3.59563 4.41675 4.44340 4.45973 4.54406 4.57025 4.63055 4.68503 4.72700 4.90451 4.95328 5.05342 5.07035 5.15853 5.27969 5.31248 5.33956 5.35133 5.40348 5.42551 5.50030 5.54836 5.57020 5.71389 5.77169 5.80417 5.86020 5.89386 5.98119 6.00192 6.06987 6.13616 6.49116 6.64272 6.67141 6.77550 7.04568 7.24015 7.64740 7.77933 7.98324 8.41038 8.96103 9.03417 9.61015 11.10189 Molecular weight = 306.21amu Principal moments of inertia in cm(-1) A = 0.022473 B = 0.002637 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.626096 B =10617.133519 C =11243.590100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.159 4.159 3 C 0.056 3.944 4 N -0.453 5.453 5 C 0.100 3.900 6 C -0.150 4.150 7 C -0.182 4.182 8 C -0.173 4.173 9 C 0.340 3.660 10 N -0.320 5.320 11 N -0.290 5.290 12 C 0.202 3.798 13 C -0.035 4.035 14 C -0.102 4.102 15 C 0.023 3.977 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 N -0.475 5.475 25 C 0.078 3.922 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.972 1.133 23.679 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C -0.071 4.071 4 N -0.175 5.175 5 C -0.026 4.026 6 C -0.168 4.168 7 C -0.219 4.219 8 C -0.211 4.211 9 C -0.016 4.016 10 N -0.165 5.165 11 N -0.129 5.129 12 C -0.065 4.065 13 C -0.074 4.074 14 C -0.141 4.141 15 C -0.014 4.014 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 N -0.170 5.170 25 C -0.065 4.065 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.035 0.965 46 H 0.070 0.930 47 H 0.102 0.898 48 H 0.109 0.891 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.273 0.306 23.848 27.294 hybrid contribution 0.145 1.120 -0.618 1.287 sum -13.128 1.426 23.230 26.721 Atomic orbital electron populations 1.21657 0.94967 1.01973 1.01729 1.22159 0.96884 0.97689 1.03087 1.22435 0.84359 0.96846 1.03457 1.58876 1.08699 1.51877 0.98078 1.21617 1.00151 0.95057 0.85804 1.22263 1.05220 1.00220 0.89123 1.23086 0.94112 1.02012 1.02736 1.22955 0.95395 1.03537 0.99200 1.22298 1.03772 0.90510 0.85053 1.74561 1.19527 1.10920 1.11472 1.74012 1.20175 1.21894 0.96862 1.25285 0.98559 0.86282 0.96404 1.20347 1.01068 1.03875 0.82159 1.21644 0.92922 0.98673 1.00845 1.19099 0.97042 0.97352 0.87921 1.21224 1.02323 1.40347 0.91939 0.92732 1.25009 0.97012 0.95793 0.96582 1.69954 1.35638 1.48094 0.99800 0.86604 0.84273 0.79394 0.77805 1.20599 1.21232 1.19919 1.46071 1.47881 1.16685 1.06316 1.22072 1.00173 0.81331 1.02912 0.92529 0.92510 0.92784 0.91643 0.91191 0.88793 0.90700 0.89441 0.92127 0.86911 0.88823 0.88823 0.88571 0.88582 0.88536 0.90487 0.93558 0.92467 0.96178 0.96520 0.92988 0.89763 0.89057 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.16 -1.48 5.30 -26.73 -0.14 -1.62 16 3 C 0.06 0.49 5.02 -3.82 -0.02 0.47 16 4 N -0.45 -5.03 4.75 -174.51 -0.83 -5.86 16 5 C 0.10 1.04 4.45 -3.82 -0.02 1.02 16 6 C -0.15 -1.17 4.75 -90.62 -0.43 -1.60 16 7 C -0.18 -1.18 10.18 -26.73 -0.27 -1.45 16 8 C -0.17 -1.20 10.25 -26.73 -0.27 -1.47 16 9 C 0.34 4.93 5.54 -318.87 -1.77 3.17 16 10 N -0.32 -5.61 11.27 30.32 0.34 -5.27 16 11 N -0.29 -5.55 12.18 32.99 0.40 -5.15 16 12 C 0.20 3.43 7.32 -154.01 -1.13 2.30 16 13 C -0.03 -0.58 5.59 -27.88 -0.16 -0.74 16 14 C -0.10 -2.08 5.13 -26.73 -0.14 -2.22 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 N -0.48 -6.78 3.21 -121.46 -0.39 -7.17 16 25 C 0.08 0.80 10.99 59.84 0.66 1.45 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.82 6.97 -51.93 -0.36 0.46 16 30 H 0.07 0.64 6.59 -51.93 -0.34 0.30 16 31 H 0.09 0.66 7.21 -51.93 -0.37 0.28 16 32 H 0.07 0.62 6.31 -51.93 -0.33 0.29 16 33 H 0.09 1.07 8.01 -51.93 -0.42 0.65 16 34 H 0.06 0.65 5.92 -51.92 -0.31 0.35 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.61 8.03 -51.93 -0.42 0.19 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.08 1.13 7.32 -51.93 -0.38 0.75 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.09 0.83 7.32 -51.93 -0.38 0.45 16 49 H 0.09 0.68 6.21 -51.93 -0.32 0.36 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -32.66 391.30 -11.39 -44.06 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -8.67 Total: -2.87 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -3.87 Total: -14.39 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.26 Total: -49.36 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.66 -11.39 -44.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121305670.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.798 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds