Wall clock time and date at job start Fri Apr 10 2020 21:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46834 * 2 1 4 4 N 1.46901 * 109.47240 * 185.03844 * 3 2 1 5 5 C 1.46897 * 111.00226 * 297.70098 * 4 3 2 6 6 C 1.53005 * 109.47022 * 294.10862 * 5 4 3 7 7 C 1.52995 * 117.52024 * 116.71111 * 6 5 4 8 8 C 1.52999 * 117.50006 * 185.34433 * 6 5 4 9 9 C 1.38577 * 110.99963 * 61.65006 * 4 3 2 10 10 N 1.31222 * 126.47548 * 253.30661 * 9 4 3 11 11 N 1.28529 * 109.86119 * 179.82272 * 10 9 4 12 12 C 1.30295 * 110.05266 * 0.44683 * 11 10 9 13 13 C 1.50702 * 126.34808 * 179.69779 * 12 11 10 14 14 C 1.52998 * 109.46830 * 270.04057 * 13 12 11 15 15 C 1.53002 * 109.46935 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46974 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00116 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99506 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00460 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99566 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47190 * 90.00055 * 20 18 16 22 22 H 1.48496 * 109.47214 * 210.00287 * 20 18 16 23 23 H 1.48499 * 109.47378 * 330.00280 * 20 18 16 24 24 N 1.36455 * 126.47080 * 73.60885 * 9 4 3 25 25 C 1.46496 * 127.14108 * 359.97438 * 24 9 4 26 26 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47330 * 299.99735 * 1 2 3 28 28 H 1.09000 * 109.47150 * 59.99922 * 1 2 3 29 29 H 1.08998 * 109.47330 * 240.00265 * 2 1 3 30 30 H 1.09000 * 109.47150 * 120.00078 * 2 1 3 31 31 H 1.09002 * 109.47349 * 65.04267 * 3 2 1 32 32 H 1.09000 * 109.47199 * 305.03654 * 3 2 1 33 33 H 1.08993 * 109.47588 * 174.10318 * 5 4 3 34 34 H 1.09008 * 109.47373 * 54.09856 * 5 4 3 35 35 H 1.09005 * 115.54191 * 331.01143 * 6 5 4 36 36 H 1.09001 * 117.49715 * 214.96481 * 7 6 5 37 37 H 1.08998 * 117.50272 * 359.97438 * 7 6 5 38 38 H 1.09004 * 117.49594 * 359.97244 * 8 6 5 39 39 H 1.09000 * 117.49784 * 144.99206 * 8 6 5 40 40 H 1.09005 * 109.47004 * 30.03931 * 13 12 11 41 41 H 1.08997 * 109.47599 * 150.03616 * 13 12 11 42 42 H 1.08992 * 109.47157 * 299.99442 * 14 13 12 43 43 H 1.09004 * 109.47384 * 60.00308 * 14 13 12 44 44 H 1.08996 * 109.47599 * 300.00080 * 15 14 13 45 45 H 1.09001 * 109.47155 * 60.00280 * 15 14 13 46 46 H 0.96999 * 120.00023 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.46840 * 92.28980 * 25 24 9 48 48 H 1.08995 * 109.47591 * 212.29507 * 25 24 9 49 49 H 1.09000 * 109.46939 * 332.30157 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5039 1.4444 -0.1216 5 6 4.1284 0.7723 1.0256 6 6 3.8644 1.5820 2.2967 7 6 3.0346 0.9189 3.3978 8 6 4.5406 1.1128 3.5865 9 6 3.9038 0.8643 -1.3149 10 7 4.4576 -0.3163 -1.4613 11 7 4.6952 -0.5360 -2.7052 12 6 4.3189 0.4868 -3.4193 13 6 4.4336 0.6219 -4.9159 14 6 5.7809 1.2550 -5.2690 15 6 5.8976 1.3916 -6.7884 16 6 7.2245 2.0158 -7.1362 17 1 7.9155 2.2874 -6.3520 18 6 7.5561 2.2400 -8.4556 19 7 6.7143 1.9096 -9.4106 20 14 9.2011 3.0130 -8.8868 21 1 10.2165 1.9453 -9.0717 22 1 9.0676 3.7922 -10.1438 23 1 9.6270 3.9161 -7.7876 24 7 3.8013 1.4152 -2.5591 25 6 3.2505 2.7286 -2.9022 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7522 1.9296 0.9317 32 1 1.6048 1.9817 -0.8414 33 1 5.2030 0.6950 0.8607 34 1 3.7050 -0.2261 1.1365 35 1 3.7440 2.6559 2.1534 36 1 2.3685 1.5564 3.9791 37 1 2.6762 -0.0945 3.2168 38 1 5.1731 0.2269 3.5295 39 1 4.8650 1.8780 4.2917 40 1 4.3635 -0.3637 -5.3761 41 1 3.6268 1.2541 -5.2866 42 1 5.8510 2.2406 -4.8088 43 1 6.5878 0.6227 -4.8984 44 1 5.8277 0.4059 -7.2483 45 1 5.0908 2.0237 -7.1594 46 1 6.9475 2.0677 -10.3387 47 1 4.0529 3.4662 -2.9181 48 1 2.7815 2.6805 -3.8849 49 1 2.5073 3.0164 -2.1586 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121305670.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:52:20 Heat of formation + Delta-G solvation = 74.260077 kcal Electronic energy + Delta-G solvation = -25471.693633 eV Core-core repulsion = 22048.920147 eV Total energy + Delta-G solvation = -3422.773486 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.212 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.06579 -39.99661 -37.40781 -36.75796 -35.76727 -34.47490 -33.87245 -31.26425 -28.92918 -28.45554 -28.30552 -26.09597 -25.52427 -23.21955 -23.15166 -22.56561 -22.06636 -21.42691 -20.67265 -18.54573 -18.07317 -17.84736 -17.29523 -16.80319 -16.50208 -15.98324 -15.62691 -15.58991 -15.44868 -14.90778 -14.67880 -14.38686 -14.25158 -13.85817 -13.77415 -13.68749 -13.24813 -13.17549 -12.83559 -12.69697 -12.67580 -12.59849 -12.45302 -12.43741 -12.31483 -12.27006 -11.74396 -11.66886 -11.51932 -11.38169 -11.27180 -11.24273 -11.09457 -10.87811 -10.54203 -10.53255 -9.36544 -8.19497 -6.29463 0.72870 1.22753 1.40178 1.41335 1.51962 1.75433 2.41462 2.59406 2.91629 3.13978 3.36871 3.70567 3.73506 3.79227 3.86049 3.90073 4.04446 4.06721 4.18383 4.22965 4.25670 4.33842 4.37964 4.42273 4.53841 4.56204 4.66062 4.67733 4.70451 4.77427 4.83002 4.84718 4.98453 5.05019 5.05414 5.07916 5.09860 5.11141 5.17335 5.28457 5.30548 5.31781 5.49899 5.53071 5.67540 5.74736 5.86018 6.17344 6.26470 6.86213 7.39196 7.71031 8.91923 Molecular weight = 306.21amu Principal moments of inertia in cm(-1) A = 0.022473 B = 0.002637 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.626096 B =10617.133519 C =11243.590100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.153 4.153 3 C 0.057 3.943 4 N -0.447 5.447 5 C 0.104 3.896 6 C -0.154 4.154 7 C -0.168 4.168 8 C -0.176 4.176 9 C 0.355 3.645 10 N -0.356 5.356 11 N -0.328 5.328 12 C 0.193 3.807 13 C -0.022 4.022 14 C -0.084 4.084 15 C 0.028 3.972 16 C -0.544 4.544 17 H 0.053 0.947 18 C 0.004 3.996 19 N -0.929 5.929 20 Si 0.959 3.041 21 H -0.276 1.276 22 H -0.279 1.279 23 H -0.266 1.266 24 N -0.473 5.473 25 C 0.068 3.932 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.052 0.948 43 H 0.038 0.962 44 H -0.004 1.004 45 H 0.007 0.993 46 H 0.264 0.736 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.076 3.121 25.416 29.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.192 4.192 3 C -0.069 4.069 4 N -0.171 5.171 5 C -0.022 4.022 6 C -0.172 4.172 7 C -0.205 4.205 8 C -0.214 4.214 9 C -0.002 4.002 10 N -0.200 5.200 11 N -0.168 5.168 12 C -0.076 4.076 13 C -0.061 4.061 14 C -0.123 4.123 15 C -0.009 4.009 16 C -0.582 4.582 17 H 0.071 0.929 18 C -0.194 4.194 19 N -0.569 5.569 20 Si 0.784 3.216 21 H -0.201 1.201 22 H -0.204 1.204 23 H -0.190 1.190 24 N -0.167 5.167 25 C -0.073 4.073 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.014 0.986 45 H 0.026 0.974 46 H 0.073 0.927 47 H 0.105 0.895 48 H 0.123 0.877 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.392 2.305 25.601 29.459 hybrid contribution 0.453 0.504 -1.084 1.279 sum -13.939 2.808 24.516 28.341 Atomic orbital electron populations 1.21628 0.93209 1.02164 1.02829 1.22085 0.98341 0.97636 1.01179 1.22589 0.82339 0.96703 1.05252 1.59093 1.10347 1.50807 0.96840 1.21559 0.98489 0.95409 0.86779 1.22130 1.06931 1.00088 0.88083 1.23143 0.93937 1.02052 1.01341 1.23038 0.95998 1.03632 0.98729 1.22665 1.01752 0.89634 0.86153 1.74468 1.21612 1.12915 1.10998 1.73906 1.21400 1.23588 0.97865 1.25064 0.99374 0.86863 0.96330 1.20117 0.99671 1.03801 0.82558 1.21331 0.94573 0.98941 0.97422 1.18976 0.95648 0.95426 0.90849 1.21649 1.03562 1.40663 0.92326 0.92869 1.25883 1.00811 0.96241 0.96506 1.70065 1.37596 1.49023 1.00231 0.85533 0.79568 0.78622 0.77854 1.20125 1.20403 1.18989 1.46229 1.47328 1.17445 1.05661 1.22435 1.00894 0.79306 1.04649 0.92886 0.90413 0.92599 0.95365 0.91341 0.86107 0.89749 0.92059 0.92927 0.86257 0.87012 0.88977 0.89265 0.87350 0.89023 0.87951 0.92955 0.94320 0.98550 0.97447 0.92703 0.89481 0.87722 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.15 -2.67 5.30 30.59 0.16 -2.50 16 3 C 0.06 0.85 5.02 86.30 0.43 1.28 16 4 N -0.45 -9.40 4.75 -706.02 -3.35 -12.75 16 5 C 0.10 2.12 4.45 86.31 0.38 2.51 16 6 C -0.15 -2.11 4.75 -10.79 -0.05 -2.16 16 7 C -0.17 -1.73 10.18 30.59 0.31 -1.42 16 8 C -0.18 -2.14 10.25 30.60 0.31 -1.83 16 9 C 0.36 10.24 5.54 260.11 1.44 11.68 16 10 N -0.36 -12.87 11.27 -58.00 -0.65 -13.52 16 11 N -0.33 -13.00 12.18 -49.53 -0.60 -13.60 16 12 C 0.19 6.59 7.32 137.64 1.01 7.59 16 13 C -0.02 -0.74 5.59 29.85 0.17 -0.57 16 14 C -0.08 -3.47 5.13 30.59 0.16 -3.31 16 15 C 0.03 1.45 4.97 29.85 0.15 1.60 16 16 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 17 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 18 C 0.00 0.21 5.46 84.66 0.46 0.67 16 19 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 20 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 N -0.47 -13.12 3.21 -538.19 -1.73 -14.85 16 25 C 0.07 1.24 10.99 127.77 1.40 2.64 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.03 0.71 6.97 -2.39 -0.02 0.69 16 30 H 0.07 1.19 6.59 -2.39 -0.02 1.18 16 31 H 0.12 1.22 7.21 -2.39 -0.02 1.21 16 32 H 0.08 1.13 6.31 -2.39 -0.02 1.11 16 33 H 0.06 1.55 8.01 -2.39 -0.02 1.54 16 34 H 0.05 1.15 5.92 -2.38 -0.01 1.13 16 35 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 1.00 8.03 -2.39 -0.02 0.99 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 41 H 0.10 2.90 7.32 -2.39 -0.02 2.88 16 42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 47 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.10 1.64 7.32 -2.39 -0.02 1.62 16 49 H 0.11 1.43 6.21 -2.39 -0.01 1.41 16 Total: -1.00 -72.35 391.30 4.17 -68.17 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.91 Total: 11.26 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 7.29 Total: -15.66 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -6.05 Total: -110.24 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -72.35 4.17 -68.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121305670.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.434 kcal (2) G-P(sol) polarization free energy of solvation -72.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds