Wall clock time and date at job start Fri Apr 10 2020 21:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47193 * 2 1 4 4 H 1.08998 * 110.72625 * 303.35641 * 3 2 1 5 5 C 1.54941 * 110.66769 * 180.26195 * 3 2 1 6 6 H 1.09004 * 110.71747 * 322.50879 * 5 3 2 7 7 C 1.52992 * 110.72314 * 85.79199 * 5 3 2 8 8 C 1.54593 * 102.91951 * 204.15193 * 5 3 2 9 9 C 1.53997 * 105.14333 * 21.95886 * 8 5 3 10 10 N 1.47901 * 107.05331 * 1.22138 * 9 8 5 11 11 C 1.38586 * 110.99644 * 214.15966 * 10 9 8 12 12 N 1.31218 * 126.46875 * 239.90545 * 11 10 9 13 13 N 1.28523 * 109.85959 * 179.97438 * 12 11 10 14 14 C 1.30297 * 110.05303 * 359.72031 * 13 12 11 15 15 C 1.50702 * 126.35121 * 180.31412 * 14 13 12 16 16 C 1.52993 * 109.47023 * 270.15051 * 15 14 13 17 17 C 1.53004 * 109.47193 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47358 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99805 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00522 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99638 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00505 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47160 * 60.00175 * 22 20 18 24 24 H 1.48500 * 109.47191 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.46853 * 300.00224 * 22 20 18 26 26 N 1.36449 * 126.47441 * 59.87310 * 11 10 9 27 27 C 1.46499 * 127.13718 * 0.02848 * 26 11 10 28 28 H 1.08998 * 109.47173 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46962 * 300.00369 * 1 2 3 30 30 H 1.08997 * 109.46870 * 59.99884 * 1 2 3 31 31 H 1.09004 * 109.46737 * 240.00122 * 2 1 3 32 32 H 1.08997 * 109.46870 * 120.00116 * 2 1 3 33 33 H 1.09008 * 109.46924 * 174.95757 * 7 5 3 34 34 H 1.09004 * 109.47671 * 294.95368 * 7 5 3 35 35 H 1.09000 * 109.47236 * 54.95858 * 7 5 3 36 36 H 1.08999 * 110.30726 * 263.03360 * 8 5 3 37 37 H 1.09003 * 110.30329 * 140.87132 * 8 5 3 38 38 H 1.09002 * 109.91299 * 241.87194 * 9 8 5 39 39 H 1.08992 * 109.91930 * 120.57494 * 9 8 5 40 40 H 1.09005 * 109.47087 * 30.15137 * 15 14 13 41 41 H 1.08995 * 109.47275 * 150.14646 * 15 14 13 42 42 H 1.09006 * 109.47213 * 299.99432 * 16 15 14 43 43 H 1.08995 * 109.47426 * 59.99687 * 16 15 14 44 44 H 1.08991 * 109.47222 * 300.00219 * 17 16 15 45 45 H 1.09008 * 109.46653 * 59.99889 * 17 16 15 46 46 H 0.96999 * 120.00352 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.47391 * 89.99405 * 27 26 11 48 48 H 1.09001 * 109.46813 * 329.99462 * 27 26 11 49 49 H 1.09004 * 109.47041 * 209.99589 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6402 1.9930 -0.8515 5 6 3.5891 1.4748 -0.0066 6 1 3.9942 0.6731 0.6110 7 6 4.1264 1.3833 -1.4362 8 6 3.9086 2.8557 0.6106 9 6 2.6499 3.2398 1.4104 10 7 1.6914 2.1218 1.2740 11 6 0.3863 2.5870 1.2477 12 7 -0.5686 2.2794 2.0935 13 7 -1.6517 2.8915 1.7709 14 6 -1.4521 3.6247 0.7123 15 6 -2.4702 4.4986 0.0261 16 6 -3.2021 3.6854 -1.0434 17 6 -4.2362 4.5725 -1.7397 18 6 -4.9567 3.7717 -2.7936 19 1 -4.7028 2.7338 -2.9507 20 6 -5.9408 4.3638 -3.5565 21 7 -6.2503 5.6275 -3.3648 22 14 -6.8344 3.3710 -4.8623 23 1 -7.5197 2.2181 -4.2250 24 1 -7.8379 4.2320 -5.5382 25 1 -5.8554 2.8740 -5.8624 26 7 -0.1484 3.4520 0.3379 27 6 0.5345 4.0720 -0.8004 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.2104 1.4977 -1.4249 34 1 3.8679 0.4130 -1.8602 35 1 3.6839 2.1741 -2.0420 36 1 4.0955 3.5873 -0.1754 37 1 4.7707 2.7832 1.2738 38 1 2.2157 4.1530 1.0033 39 1 2.9063 3.3832 2.4600 40 1 -3.1888 4.8641 0.7597 41 1 -1.9666 5.3444 -0.4418 42 1 -2.4835 3.3200 -1.7771 43 1 -3.7057 2.8396 -0.5755 44 1 -4.9546 4.9376 -1.0059 45 1 -3.7328 5.4186 -2.2076 46 1 -6.9424 6.0442 -3.9017 47 1 0.4328 3.4326 -1.6773 48 1 1.5910 4.1998 -0.5645 49 1 0.0878 5.0447 -1.0061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121397709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:52:46 Heat of formation + Delta-G solvation = 70.787690 kcal Electronic energy + Delta-G solvation = -26438.461269 eV Core-core repulsion = 23015.537208 eV Total energy + Delta-G solvation = -3422.924060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.212 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.03333 -39.92512 -35.31929 -34.80870 -33.66232 -33.54073 -32.28392 -29.98326 -28.96462 -27.71035 -27.08154 -26.00844 -23.81823 -23.29224 -21.80350 -21.07502 -20.54011 -20.48954 -20.08964 -17.22694 -16.76081 -16.33397 -16.03967 -15.74548 -15.40167 -14.59916 -14.38564 -14.11649 -14.02123 -13.77818 -13.51407 -13.36515 -13.16030 -12.91666 -12.78795 -12.63503 -12.36097 -12.15143 -12.04837 -11.56713 -11.47920 -11.33448 -11.31435 -11.04302 -10.95517 -10.85972 -10.77226 -10.69254 -10.60709 -10.27501 -10.06488 -9.79435 -9.50800 -9.19518 -9.12630 -8.58752 -8.38098 -6.03433 -4.05880 1.79475 2.38906 3.00995 3.20894 3.31428 3.35999 3.38863 4.01221 4.18232 4.31550 4.41907 4.43033 4.64056 4.65630 4.81136 4.83141 4.89361 4.97923 5.03559 5.07436 5.14278 5.23288 5.27987 5.32474 5.33596 5.47345 5.49623 5.54255 5.61940 5.71145 5.76818 5.82182 5.84801 5.93239 5.96281 5.97610 6.03044 6.08659 6.33696 6.39912 6.54601 6.59587 6.72596 7.00109 7.20341 7.61231 7.74576 7.95535 8.37980 8.97141 9.00400 9.58411 11.07815 Molecular weight = 306.21amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.003226 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.260234 B = 8678.022093 C = 9077.094202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C 0.065 3.935 4 H 0.063 0.937 5 C -0.091 4.091 6 H 0.091 0.909 7 C -0.144 4.144 8 C -0.127 4.127 9 C 0.032 3.968 10 N -0.417 5.417 11 C 0.327 3.673 12 N -0.266 5.266 13 N -0.293 5.293 14 C 0.208 3.792 15 C -0.037 4.037 16 C -0.101 4.101 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.054 0.946 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.277 1.277 26 N -0.501 5.501 27 C 0.064 3.936 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.016 0.984 46 H 0.261 0.739 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.237 -4.644 4.996 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.141 4.141 3 C -0.043 4.043 4 H 0.081 0.919 5 C -0.110 4.110 6 H 0.109 0.891 7 C -0.201 4.201 8 C -0.166 4.166 9 C -0.096 4.096 10 N -0.141 5.141 11 C -0.028 4.028 12 N -0.107 5.107 13 N -0.132 5.132 14 C -0.060 4.060 15 C -0.077 4.077 16 C -0.140 4.140 17 C -0.013 4.013 18 C -0.560 4.560 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.203 1.203 26 N -0.199 5.199 27 C -0.080 4.080 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.039 0.961 45 H 0.034 0.966 46 H 0.071 0.929 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 23.461 -5.500 6.571 24.977 hybrid contribution 0.057 0.707 -2.558 2.654 sum 23.519 -4.793 4.014 24.335 Atomic orbital electron populations 1.22009 0.95286 1.02248 1.03036 1.21418 0.96549 0.93829 1.02331 1.23203 0.95221 0.96500 0.89327 0.91882 1.22121 0.93497 0.97908 0.97453 0.89106 1.21792 1.01114 1.02331 0.94888 1.22537 0.97477 0.97051 0.99488 1.23085 0.91902 0.92040 1.02525 1.61890 0.95876 1.22075 1.34233 1.22998 0.93531 0.95214 0.91044 1.74439 0.95182 1.19869 1.21221 1.74226 1.17537 1.09377 1.12104 1.25284 0.84032 1.01110 0.95537 1.20375 0.93562 0.95298 0.98482 1.21638 0.98282 0.99143 0.94949 1.19090 0.92804 0.94453 0.94998 1.21177 1.19295 0.97230 1.18286 0.92800 1.25004 0.96956 0.94935 0.97439 1.69944 1.31690 1.11203 1.40620 0.86664 0.79521 0.80077 0.81794 1.20145 1.21243 1.20313 1.47168 1.11539 1.36769 1.24389 1.22289 0.97891 1.00274 0.87521 0.92593 0.90376 0.93723 0.91427 0.90701 0.91988 0.92040 0.92568 0.90853 0.90108 0.92889 0.88957 0.88419 0.90561 0.93722 0.92377 0.96129 0.96589 0.92900 0.89824 0.89649 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.24 37.16 0.34 -1.92 16 2 C -0.10 -1.07 5.68 -26.73 -0.15 -1.22 16 3 C 0.06 0.62 1.75 -65.79 -0.11 0.51 16 4 H 0.06 0.62 5.37 -51.93 -0.28 0.35 16 5 C -0.09 -0.62 3.10 -88.76 -0.27 -0.89 16 6 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 7 C -0.14 -0.79 9.15 37.15 0.34 -0.45 16 8 C -0.13 -0.78 6.51 -25.37 -0.17 -0.95 16 9 C 0.03 0.28 5.96 -2.75 -0.02 0.26 16 10 N -0.42 -4.86 5.05 -163.14 -0.82 -5.69 16 11 C 0.33 4.79 4.53 -318.87 -1.44 3.35 16 12 N -0.27 -4.83 10.77 30.31 0.33 -4.51 16 13 N -0.29 -5.60 12.18 32.99 0.40 -5.20 16 14 C 0.21 3.47 7.32 -154.01 -1.13 2.34 16 15 C -0.04 -0.62 5.59 -27.89 -0.16 -0.78 16 16 C -0.10 -2.04 5.13 -26.73 -0.14 -2.18 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 N -0.50 -6.93 3.12 -121.45 -0.38 -7.31 16 27 C 0.06 0.62 8.95 59.85 0.54 1.16 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.26 4.78 -51.93 -0.25 1.02 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 34 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 35 H 0.06 0.31 8.12 -51.93 -0.42 -0.11 16 36 H 0.07 0.37 7.85 -51.93 -0.41 -0.04 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.47 5.36 -51.93 -0.28 0.19 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.08 1.11 7.26 -51.93 -0.38 0.73 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.08 0.78 7.59 -51.93 -0.39 0.39 16 48 H 0.09 0.64 5.29 -51.93 -0.27 0.37 16 49 H 0.10 0.87 7.24 -51.93 -0.38 0.49 16 LS Contribution 376.44 15.07 5.67 5.67 Total: -1.00 -32.82 376.44 -10.51 -43.33 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -8.51 Total: -3.39 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -2.92 Total: -13.66 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.26 Total: -48.47 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.82 -10.51 -43.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121397709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.119 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds