Wall clock time and date at job start Fri Apr 10 2020 21:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99784 * 2 1 4 4 N 1.46502 * 109.47000 * 123.77785 * 3 2 1 5 5 C 1.36739 * 127.13608 * 275.83810 * 4 3 2 6 6 C 1.50697 * 126.34720 * 359.96915 * 5 4 3 7 7 C 1.53000 * 109.47101 * 270.28100 * 6 5 4 8 8 C 1.50696 * 109.47470 * 180.02562 * 7 6 5 9 9 H 1.08007 * 119.99906 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00335 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00117 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 120.00060 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47626 * 89.99565 * 12 10 8 14 14 H 1.48501 * 109.47663 * 210.00190 * 12 10 8 15 15 H 1.48504 * 109.47220 * 329.99880 * 12 10 8 16 16 N 1.30297 * 107.30515 * 180.22607 * 5 4 3 17 17 N 1.28535 * 110.05230 * 359.77765 * 16 5 4 18 18 C 1.31217 * 109.85747 * 359.97438 * 17 16 5 19 19 N 1.38579 * 126.47084 * 179.97438 * 18 17 16 20 20 C 1.46904 * 110.99965 * 106.58736 * 19 18 17 21 21 C 1.46907 * 111.00227 * 342.63766 * 19 18 17 22 22 C 1.52994 * 109.47402 * 199.75066 * 21 19 18 23 23 H 1.09008 * 109.47046 * 303.92740 * 22 21 19 24 24 C 1.52996 * 109.47490 * 183.92410 * 22 21 19 25 25 C 1.53005 * 109.47405 * 63.92056 * 22 21 19 26 26 C 1.52995 * 109.47284 * 185.00078 * 25 22 21 27 27 H 1.08003 * 120.00017 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00223 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00017 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47636 * 3.78164 * 3 2 1 31 31 H 1.09002 * 109.47256 * 243.77355 * 3 2 1 32 32 H 1.08989 * 109.47607 * 30.28560 * 6 5 4 33 33 H 1.09003 * 109.47162 * 150.28795 * 6 5 4 34 34 H 1.09003 * 109.47287 * 300.00774 * 7 6 5 35 35 H 1.09005 * 109.46993 * 60.00071 * 7 6 5 36 36 H 0.97004 * 120.00340 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.47109 * 299.28491 * 20 19 18 38 38 H 1.09002 * 109.46787 * 59.28635 * 20 19 18 39 39 H 1.09000 * 109.47064 * 179.28829 * 20 19 18 40 40 H 1.09002 * 109.46795 * 79.74524 * 21 19 18 41 41 H 1.09002 * 109.46652 * 319.74965 * 21 19 18 42 42 H 1.08999 * 109.47374 * 174.08532 * 24 22 21 43 43 H 1.09002 * 109.46844 * 54.08543 * 24 22 21 44 44 H 1.09001 * 109.46922 * 294.08755 * 24 22 21 45 45 H 1.09002 * 109.46945 * 305.00768 * 25 22 21 46 46 H 1.09006 * 109.46713 * 64.99941 * 25 22 21 47 47 H 1.08997 * 109.47238 * 300.00127 * 26 25 22 48 48 H 1.09002 * 109.46892 * 60.00382 * 26 25 22 49 49 H 1.09002 * 109.46826 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9726 1.3441 1.1481 5 6 2.6698 1.7159 2.4287 6 6 1.3238 2.1688 2.9326 7 6 1.2068 3.6867 2.7809 8 6 -0.1390 4.1398 3.2853 9 1 -0.8406 3.4174 3.6756 10 6 -0.4747 5.4766 3.2487 11 7 -1.6494 5.8719 3.6885 12 14 0.7384 6.7260 2.5731 13 1 0.5218 6.8869 1.1128 14 1 0.5336 8.0315 3.2507 15 1 2.1245 6.2531 2.8187 16 7 3.7622 1.6113 3.1312 17 7 4.7260 1.1973 2.3883 18 6 4.2965 1.0137 1.1621 19 7 5.0471 0.5737 0.0835 20 6 4.7092 -0.8135 -0.2621 21 6 6.4849 0.7144 0.3503 22 6 7.2529 0.7007 -0.9728 23 1 7.0151 -0.2107 -1.5215 24 6 8.7559 0.7486 -0.6907 25 6 6.8517 1.9181 -1.8082 26 6 7.5238 1.8392 -3.1803 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3571 2.1325 0.0678 31 1 2.6384 1.3927 -0.9219 32 1 0.5374 1.6842 2.3542 33 1 1.2200 1.8997 3.9838 34 1 1.9933 4.1714 3.3593 35 1 1.3106 3.9559 1.7297 36 1 -1.8855 6.8124 3.6631 37 1 4.9234 -1.4621 0.5873 38 1 3.6499 -0.8782 -0.5107 39 1 5.3036 -1.1294 -1.1195 40 1 6.8213 -0.1136 0.9744 41 1 6.6680 1.6565 0.8670 42 1 9.3049 0.6331 -1.6253 43 1 9.0237 -0.0593 -0.0098 44 1 9.0098 1.7062 -0.2361 45 1 5.7690 1.9315 -1.9340 46 1 7.1696 2.8284 -1.2996 47 1 8.6064 1.8258 -3.0543 48 1 7.2059 0.9290 -3.6887 49 1 7.2383 2.7068 -3.7751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121519547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:53:27 Heat of formation + Delta-G solvation = 86.471733 kcal Electronic energy + Delta-G solvation = -26025.029485 eV Core-core repulsion = 22602.785536 eV Total energy + Delta-G solvation = -3422.243949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.212 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.69173 -38.56735 -36.22789 -35.56089 -34.02720 -32.62418 -31.82421 -30.30669 -29.10684 -27.47137 -26.88894 -25.69016 -24.85402 -23.46747 -21.57218 -21.10307 -20.28573 -19.76940 -19.70103 -17.33336 -16.77988 -16.33076 -16.20854 -15.38672 -15.16541 -14.81604 -14.67809 -14.26645 -13.83059 -13.79981 -13.53666 -13.42498 -13.27952 -12.72953 -12.65719 -12.38366 -12.28357 -12.19030 -12.11910 -11.68614 -11.57143 -11.49607 -11.23487 -11.10340 -10.98528 -10.74533 -10.68646 -10.55380 -10.20288 -10.11958 -9.92123 -9.81825 -9.63607 -9.32386 -9.29288 -8.59588 -8.10723 -6.10357 -4.09752 1.82223 2.07108 2.62117 3.19491 3.27175 3.36545 3.43118 3.69803 4.41231 4.49855 4.62468 4.66773 4.68863 4.76471 4.84197 4.99905 5.03079 5.11079 5.17958 5.23477 5.24143 5.30118 5.36458 5.42191 5.46961 5.50665 5.53338 5.58444 5.69624 5.71912 5.77521 5.84768 5.87903 5.96458 6.11030 6.20123 6.23467 6.27091 6.29362 6.37209 6.48493 6.51093 6.62292 6.85630 7.12287 7.28732 7.38652 7.69183 8.44036 8.92833 9.12079 9.51602 11.02473 Molecular weight = 306.21amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.003775 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.516934 B = 7415.134519 C = 8100.697112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.190 4.190 3 C 0.137 3.863 4 N -0.469 5.469 5 C 0.211 3.789 6 C -0.022 4.022 7 C -0.004 4.004 8 C -0.522 4.522 9 H 0.076 0.924 10 C 0.072 3.928 11 N -0.899 5.899 12 Si 0.875 3.125 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.264 1.264 16 N -0.296 5.296 17 N -0.323 5.323 18 C 0.333 3.667 19 N -0.454 5.454 20 C 0.022 3.978 21 C 0.075 3.925 22 C -0.086 4.086 23 H 0.070 0.930 24 C -0.147 4.147 25 C -0.115 4.115 26 C -0.152 4.152 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.025 0.975 35 H 0.008 0.992 36 H 0.264 0.736 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.050 0.950 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.294 -14.191 -15.003 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.209 4.209 3 C 0.014 3.986 4 N -0.163 5.163 5 C -0.057 4.057 6 C -0.061 4.061 7 C -0.042 4.042 8 C -0.560 4.560 9 H 0.094 0.906 10 C -0.130 4.130 11 N -0.538 5.538 12 Si 0.702 3.298 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.189 1.189 16 N -0.134 5.134 17 N -0.167 5.167 18 C -0.024 4.024 19 N -0.178 5.178 20 C -0.126 4.126 21 C -0.052 4.052 22 C -0.105 4.105 23 H 0.089 0.911 24 C -0.205 4.205 25 C -0.153 4.153 26 C -0.209 4.209 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.044 0.956 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.028 -13.689 -14.207 24.800 hybrid contribution -0.169 0.240 -0.944 0.989 sum 14.859 -13.448 -15.151 25.124 Atomic orbital electron populations 1.24093 0.95547 1.03067 0.96047 1.23055 0.96399 0.97616 1.03838 1.20972 0.92588 0.97576 0.87455 1.46227 1.08763 1.50681 1.10623 1.25559 0.99874 1.00160 0.80079 1.20214 0.85014 0.99229 1.01691 1.19546 0.98630 0.89559 0.96481 1.21005 0.99125 0.93823 1.42054 0.90607 1.24951 0.94973 0.98362 0.94716 1.69896 1.20663 1.16313 1.46904 0.86852 0.82645 0.81086 0.79242 1.20328 1.21147 1.18902 1.74016 0.95884 1.18227 1.25278 1.74528 1.23763 1.20171 0.98221 1.22389 0.83479 1.04598 0.91922 1.58566 1.06274 1.21767 1.31183 1.22647 1.02619 0.86125 1.01163 1.22171 0.82922 1.03321 0.96771 1.21193 0.94701 0.99311 0.95334 0.91130 1.21832 0.94967 1.02129 1.01576 1.21513 1.01436 0.97329 0.95012 1.21819 1.00581 1.01354 0.97187 0.87209 0.87740 0.87156 0.87619 0.87770 0.90651 0.88835 0.95648 0.97385 0.92597 0.94307 0.90838 0.89804 0.92926 0.89517 0.92215 0.92697 0.92403 0.90896 0.92292 0.92852 0.93038 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 14.32 29.02 0.42 -1.10 16 2 C -0.19 -2.04 9.29 -36.03 -0.33 -2.37 16 3 C 0.14 1.71 5.87 -5.19 -0.03 1.68 16 4 N -0.47 -7.55 2.79 -115.37 -0.32 -7.87 16 5 C 0.21 4.06 7.32 -154.01 -1.13 2.93 16 6 C -0.02 -0.43 5.47 -27.88 -0.15 -0.58 16 7 C 0.00 -0.09 4.02 -27.88 -0.11 -0.20 16 8 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 9 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 10 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 11 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 12 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 15 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 16 N -0.30 -6.25 12.18 32.99 0.40 -5.85 16 17 N -0.32 -6.22 11.26 30.31 0.34 -5.88 16 18 C 0.33 5.34 6.86 -318.88 -2.19 3.15 16 19 N -0.45 -5.49 3.99 -182.37 -0.73 -6.22 16 20 C 0.02 0.21 9.33 60.07 0.56 0.77 16 21 C 0.08 0.84 3.92 -3.82 -0.01 0.83 16 22 C -0.09 -0.73 2.44 -90.62 -0.22 -0.95 16 23 H 0.07 0.54 6.76 -51.92 -0.35 0.19 16 24 C -0.15 -1.10 8.80 37.16 0.33 -0.77 16 25 C -0.12 -1.04 5.34 -26.73 -0.14 -1.19 16 26 C -0.15 -1.14 9.67 37.16 0.36 -0.79 16 27 H 0.11 1.17 7.84 -52.48 -0.41 0.76 16 28 H 0.10 0.88 8.06 -52.48 -0.42 0.46 16 29 H 0.11 1.09 6.45 -52.48 -0.34 0.75 16 30 H 0.11 1.40 7.72 -51.93 -0.40 1.00 16 31 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.07 1.36 7.98 -51.94 -0.41 0.94 16 33 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 34 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 35 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.66 5.34 -51.93 -0.28 0.38 16 39 H 0.08 0.60 6.73 -51.93 -0.35 0.25 16 40 H 0.05 0.59 7.99 -51.93 -0.42 0.18 16 41 H 0.09 1.16 7.65 -51.93 -0.40 0.77 16 42 H 0.06 0.39 6.86 -51.93 -0.36 0.03 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.75 7.58 -51.93 -0.39 0.36 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.37 6.70 -51.93 -0.35 0.02 16 48 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -32.38 390.01 -10.03 -42.41 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.61 Total: -1.81 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -3.09 Total: -11.33 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.47 Total: -52.18 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.38 -10.03 -42.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121519547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.879 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds