Wall clock time and date at job start Fri Apr 10 2020 21:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99784 * 2 1 4 4 N 1.46502 * 109.47000 * 123.77785 * 3 2 1 5 5 C 1.36739 * 127.13608 * 275.83810 * 4 3 2 6 6 C 1.50697 * 126.34720 * 359.96915 * 5 4 3 7 7 C 1.53000 * 109.47101 * 270.28100 * 6 5 4 8 8 C 1.50696 * 109.47470 * 180.02562 * 7 6 5 9 9 H 1.08007 * 119.99906 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00335 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00117 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 120.00060 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47626 * 89.99565 * 12 10 8 14 14 H 1.48501 * 109.47663 * 210.00190 * 12 10 8 15 15 H 1.48504 * 109.47220 * 329.99880 * 12 10 8 16 16 N 1.30297 * 107.30515 * 180.22607 * 5 4 3 17 17 N 1.28535 * 110.05230 * 359.77765 * 16 5 4 18 18 C 1.31217 * 109.85747 * 359.97438 * 17 16 5 19 19 N 1.38579 * 126.47084 * 179.97438 * 18 17 16 20 20 C 1.46904 * 110.99965 * 106.58736 * 19 18 17 21 21 C 1.46907 * 111.00227 * 342.63766 * 19 18 17 22 22 C 1.52994 * 109.47402 * 199.75066 * 21 19 18 23 23 H 1.09008 * 109.47046 * 303.92740 * 22 21 19 24 24 C 1.52996 * 109.47490 * 183.92410 * 22 21 19 25 25 C 1.53005 * 109.47405 * 63.92056 * 22 21 19 26 26 C 1.52995 * 109.47284 * 185.00078 * 25 22 21 27 27 H 1.08003 * 120.00017 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00223 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00017 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47636 * 3.78164 * 3 2 1 31 31 H 1.09002 * 109.47256 * 243.77355 * 3 2 1 32 32 H 1.08989 * 109.47607 * 30.28560 * 6 5 4 33 33 H 1.09003 * 109.47162 * 150.28795 * 6 5 4 34 34 H 1.09003 * 109.47287 * 300.00774 * 7 6 5 35 35 H 1.09005 * 109.46993 * 60.00071 * 7 6 5 36 36 H 0.97004 * 120.00340 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.47109 * 299.28491 * 20 19 18 38 38 H 1.09002 * 109.46787 * 59.28635 * 20 19 18 39 39 H 1.09000 * 109.47064 * 179.28829 * 20 19 18 40 40 H 1.09002 * 109.46795 * 79.74524 * 21 19 18 41 41 H 1.09002 * 109.46652 * 319.74965 * 21 19 18 42 42 H 1.08999 * 109.47374 * 174.08532 * 24 22 21 43 43 H 1.09002 * 109.46844 * 54.08543 * 24 22 21 44 44 H 1.09001 * 109.46922 * 294.08755 * 24 22 21 45 45 H 1.09002 * 109.46945 * 305.00768 * 25 22 21 46 46 H 1.09006 * 109.46713 * 64.99941 * 25 22 21 47 47 H 1.08997 * 109.47238 * 300.00127 * 26 25 22 48 48 H 1.09002 * 109.46892 * 60.00382 * 26 25 22 49 49 H 1.09002 * 109.46826 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9726 1.3441 1.1481 5 6 2.6698 1.7159 2.4287 6 6 1.3238 2.1688 2.9326 7 6 1.2068 3.6867 2.7809 8 6 -0.1390 4.1398 3.2853 9 1 -0.8406 3.4174 3.6756 10 6 -0.4747 5.4766 3.2487 11 7 -1.6494 5.8719 3.6885 12 14 0.7384 6.7260 2.5731 13 1 0.5218 6.8869 1.1128 14 1 0.5336 8.0315 3.2507 15 1 2.1245 6.2531 2.8187 16 7 3.7622 1.6113 3.1312 17 7 4.7260 1.1973 2.3883 18 6 4.2965 1.0137 1.1621 19 7 5.0471 0.5737 0.0835 20 6 4.7092 -0.8135 -0.2621 21 6 6.4849 0.7144 0.3503 22 6 7.2529 0.7007 -0.9728 23 1 7.0151 -0.2107 -1.5215 24 6 8.7559 0.7486 -0.6907 25 6 6.8517 1.9181 -1.8082 26 6 7.5238 1.8392 -3.1803 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3571 2.1325 0.0678 31 1 2.6384 1.3927 -0.9219 32 1 0.5374 1.6842 2.3542 33 1 1.2200 1.8997 3.9838 34 1 1.9933 4.1714 3.3593 35 1 1.3106 3.9559 1.7297 36 1 -1.8855 6.8124 3.6631 37 1 4.9234 -1.4621 0.5873 38 1 3.6499 -0.8782 -0.5107 39 1 5.3036 -1.1294 -1.1195 40 1 6.8213 -0.1136 0.9744 41 1 6.6680 1.6565 0.8670 42 1 9.3049 0.6331 -1.6253 43 1 9.0237 -0.0593 -0.0098 44 1 9.0098 1.7062 -0.2361 45 1 5.7690 1.9315 -1.9340 46 1 7.1696 2.8284 -1.2996 47 1 8.6064 1.8258 -3.0543 48 1 7.2059 0.9290 -3.6887 49 1 7.2383 2.7068 -3.7751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121519547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:53:27 Heat of formation + Delta-G solvation = 70.706914 kcal Electronic energy + Delta-G solvation = -26025.713099 eV Core-core repulsion = 22602.785536 eV Total energy + Delta-G solvation = -3422.927563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.212 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.04386 -39.48037 -37.33253 -36.52386 -35.75721 -33.96241 -33.52561 -31.07115 -30.55646 -28.46192 -27.88915 -27.19671 -25.95162 -24.27423 -23.33145 -22.19734 -21.65560 -20.77283 -20.56886 -19.06995 -18.27144 -17.50543 -17.35431 -16.40835 -16.25867 -15.94383 -15.65103 -15.61800 -15.18857 -15.08051 -14.74331 -14.59047 -14.49500 -14.20211 -13.59832 -13.38076 -13.26994 -13.01459 -12.96943 -12.93507 -12.85714 -12.66934 -12.43580 -12.34300 -12.24373 -12.03710 -11.87234 -11.70590 -11.48969 -11.44739 -11.41558 -11.33281 -11.12799 -10.79248 -10.57843 -10.52665 -9.38412 -8.31599 -6.35218 0.72386 0.89581 1.29800 1.35145 1.45748 1.56053 1.76700 2.32405 2.65473 3.03609 3.41525 3.68650 3.72701 3.77564 3.87975 3.96691 4.00005 4.14254 4.21656 4.33189 4.41463 4.49365 4.52601 4.56149 4.59133 4.65338 4.68748 4.74757 4.76350 4.81911 4.82976 4.88739 4.95491 5.02324 5.16431 5.19180 5.22458 5.24921 5.32563 5.39152 5.43374 5.52674 5.55638 5.57691 5.61072 5.66365 5.71491 6.18305 6.23231 6.71466 7.29440 7.71789 8.84304 Molecular weight = 306.21amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.003775 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.516934 B = 7415.134519 C = 8100.697112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.195 4.195 3 C 0.131 3.869 4 N -0.464 5.464 5 C 0.198 3.802 6 C -0.008 4.008 7 C 0.006 3.994 8 C -0.525 4.525 9 H 0.049 0.951 10 C 0.018 3.982 11 N -0.942 5.942 12 Si 0.936 3.064 13 H -0.260 1.260 14 H -0.282 1.282 15 H -0.265 1.265 16 N -0.330 5.330 17 N -0.358 5.358 18 C 0.351 3.649 19 N -0.448 5.448 20 C 0.020 3.980 21 C 0.077 3.923 22 C -0.076 4.076 23 H 0.089 0.911 24 C -0.146 4.146 25 C -0.114 4.114 26 C -0.148 4.148 27 H 0.101 0.899 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.007 0.993 35 H 0.017 0.983 36 H 0.268 0.732 37 H 0.032 0.968 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.042 0.958 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.681 -15.516 -17.808 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.213 4.213 3 C 0.010 3.990 4 N -0.158 5.158 5 C -0.072 4.072 6 C -0.048 4.048 7 C -0.033 4.033 8 C -0.563 4.563 9 H 0.067 0.933 10 C -0.180 4.180 11 N -0.582 5.582 12 Si 0.760 3.240 13 H -0.185 1.185 14 H -0.207 1.207 15 H -0.190 1.190 16 N -0.169 5.169 17 N -0.202 5.202 18 C -0.006 4.006 19 N -0.173 5.173 20 C -0.126 4.126 21 C -0.050 4.050 22 C -0.095 4.095 23 H 0.108 0.892 24 C -0.203 4.203 25 C -0.152 4.152 26 C -0.205 4.205 27 H 0.120 0.880 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.025 0.975 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.415 -15.033 -17.038 28.030 hybrid contribution -0.610 0.581 -0.108 0.849 sum 15.805 -14.451 -17.146 27.434 Atomic orbital electron populations 1.24248 0.95463 1.03691 0.94821 1.23001 0.96477 0.97039 1.04819 1.21253 0.92418 0.98517 0.86827 1.46356 1.09205 1.49820 1.10390 1.25185 0.99060 1.01450 0.81461 1.19916 0.86343 0.96769 1.01743 1.19368 0.95620 0.92086 0.96212 1.21270 1.00208 0.93489 1.41316 0.93272 1.25755 0.96578 1.00479 0.95206 1.70017 1.22583 1.16986 1.48604 0.85873 0.80056 0.78570 0.79454 1.18512 1.20710 1.18983 1.73911 0.96829 1.19203 1.26950 1.74447 1.23907 1.22178 0.99689 1.22818 0.83500 1.02337 0.91937 1.58819 1.06304 1.23451 1.28677 1.22798 1.03843 0.83943 1.02017 1.22212 0.82681 1.01815 0.98312 1.21152 0.94860 0.99824 0.93632 0.89231 1.21828 0.94250 1.01821 1.02434 1.21480 1.00798 0.96913 0.96001 1.21782 1.00871 1.01837 0.96012 0.88041 0.85744 0.85870 0.88468 0.85811 0.88901 0.89688 0.97452 0.96446 0.92328 0.94907 0.90048 0.86682 0.92980 0.92316 0.90643 0.92259 0.93373 0.92073 0.93911 0.92111 0.91945 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 14.32 67.78 0.97 -1.63 16 2 C -0.19 -3.70 9.29 25.65 0.24 -3.46 16 3 C 0.13 3.04 5.87 85.63 0.50 3.54 16 4 N -0.46 -14.47 2.79 -518.91 -1.45 -15.92 16 5 C 0.20 7.60 7.32 137.64 1.01 8.61 16 6 C -0.01 -0.32 5.47 29.85 0.16 -0.15 16 7 C 0.01 0.27 4.02 29.85 0.12 0.39 16 8 C -0.52 -29.36 9.66 25.60 0.25 -29.11 16 9 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 10 C 0.02 1.03 5.47 84.65 0.46 1.49 16 11 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 12 Si 0.94 44.78 27.47 68.60 1.88 46.67 16 13 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 15 H -0.27 -12.64 6.54 99.48 0.65 -11.99 16 16 N -0.33 -14.20 12.18 -49.54 -0.60 -14.80 16 17 N -0.36 -13.91 11.26 -58.01 -0.65 -14.56 16 18 C 0.35 10.98 6.86 260.11 1.78 12.76 16 19 N -0.45 -10.01 3.99 -730.91 -2.92 -12.93 16 20 C 0.02 0.32 9.33 127.69 1.19 1.51 16 21 C 0.08 1.62 3.92 86.30 0.34 1.96 16 22 C -0.08 -1.10 2.44 -10.80 -0.03 -1.13 16 23 H 0.09 1.01 6.76 -2.38 -0.02 0.99 16 24 C -0.15 -1.86 8.80 71.98 0.63 -1.22 16 25 C -0.11 -1.86 5.34 30.59 0.16 -1.70 16 26 C -0.15 -1.83 9.67 71.98 0.70 -1.14 16 27 H 0.10 2.01 7.84 -2.91 -0.02 1.99 16 28 H 0.12 1.75 8.06 -2.91 -0.02 1.72 16 29 H 0.12 2.05 6.45 -2.91 -0.02 2.03 16 30 H 0.10 2.45 7.72 -2.39 -0.02 2.43 16 31 H 0.12 2.37 8.10 -2.39 -0.02 2.35 16 32 H 0.09 3.31 7.98 -2.39 -0.02 3.29 16 33 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 34 H 0.01 0.36 7.20 -2.39 -0.02 0.35 16 35 H 0.02 0.79 7.57 -2.38 -0.02 0.77 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 1.18 5.34 -2.39 -0.01 1.17 16 39 H 0.11 1.14 6.73 -2.39 -0.02 1.12 16 40 H 0.05 1.11 7.99 -2.39 -0.02 1.09 16 41 H 0.06 1.59 7.65 -2.39 -0.02 1.57 16 42 H 0.07 0.75 6.86 -2.39 -0.02 0.73 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.06 1.14 7.58 -2.39 -0.02 1.12 16 46 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.06 0.67 6.70 -2.39 -0.02 0.65 16 48 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -71.26 390.01 5.90 -65.36 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.85 Total: 12.87 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 8.49 Total: -9.27 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -5.32 Total: -115.63 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.67 kcal Total: -71.26 5.90 -65.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121519547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.070 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds