Wall clock time and date at job start Fri Apr 10 2020 21:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 119.99995 * 2 1 4 4 C 1.50703 * 119.99643 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.47145 * 94.99923 * 4 2 1 6 6 C 1.36741 * 127.13141 * 269.88604 * 5 4 2 7 7 C 1.50697 * 126.34880 * 359.96074 * 6 5 4 8 8 C 1.53001 * 109.47366 * 270.29121 * 7 6 5 9 9 C 1.50703 * 109.47008 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00177 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00077 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99571 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00344 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46749 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46907 * 119.99779 * 13 11 9 16 16 H 1.48490 * 109.47321 * 239.99991 * 13 11 9 17 17 N 1.30300 * 107.30001 * 180.23170 * 6 5 4 18 18 N 1.28522 * 110.05773 * 359.76981 * 17 6 5 19 19 C 1.31224 * 109.85708 * 0.02562 * 18 17 6 20 20 N 1.38584 * 126.47059 * 179.97438 * 19 18 17 21 21 C 1.46897 * 110.99648 * 249.31267 * 20 19 18 22 22 C 1.53001 * 109.46957 * 211.08266 * 21 20 19 23 23 C 1.46903 * 110.99921 * 13.26601 * 20 19 18 24 24 C 1.52998 * 109.47320 * 292.16163 * 23 20 19 25 25 C 1.53005 * 109.46766 * 172.16466 * 23 20 19 26 26 H 1.08000 * 120.00077 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99989 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47102 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47410 * 300.00315 * 3 2 1 30 30 H 1.09001 * 109.47055 * 60.00496 * 3 2 1 31 31 H 1.08996 * 109.47308 * 334.99179 * 4 2 1 32 32 H 1.08999 * 109.46363 * 214.99294 * 4 2 1 33 33 H 1.08994 * 109.46852 * 30.29403 * 7 6 5 34 34 H 1.09004 * 109.46728 * 150.29011 * 7 6 5 35 35 H 1.09004 * 109.46848 * 299.99891 * 8 7 6 36 36 H 1.08998 * 109.46892 * 60.00129 * 8 7 6 37 37 H 0.97004 * 119.99557 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.47600 * 331.08168 * 21 20 19 39 39 H 1.08999 * 109.47020 * 91.08591 * 21 20 19 40 40 H 1.08997 * 109.47180 * 306.22125 * 22 21 20 41 41 H 1.08999 * 109.47215 * 66.22200 * 22 21 20 42 42 H 1.09006 * 109.47243 * 186.22087 * 22 21 20 43 43 H 1.08997 * 109.47119 * 52.16892 * 23 20 19 44 44 H 1.08997 * 109.47437 * 180.02562 * 24 23 20 45 45 H 1.08996 * 109.47117 * 300.00580 * 24 23 20 46 46 H 1.09009 * 109.46878 * 60.00181 * 24 23 20 47 47 H 1.09000 * 109.47010 * 190.19493 * 25 23 20 48 48 H 1.09001 * 109.47256 * 310.19632 * 25 23 20 49 49 H 1.09003 * 109.46919 * 70.19496 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4118 -1.6673 -1.3767 6 6 1.6685 -2.4161 -2.2466 7 6 0.3218 -3.0327 -1.9691 8 6 0.5129 -4.4361 -1.3903 9 6 -0.8339 -5.0530 -1.1134 10 1 -1.7360 -4.4993 -1.3283 11 6 -0.9146 -6.3238 -0.5848 12 7 0.1839 -6.9978 -0.3227 13 14 -2.5840 -7.0881 -0.2409 14 1 -3.6542 -6.1315 -0.6214 15 1 -2.7303 -8.3350 -1.0341 16 1 -2.6945 -7.4057 1.2054 17 7 2.3433 -2.5024 -3.3580 18 7 3.4514 -1.8601 -3.2519 19 6 3.5441 -1.3255 -2.0570 20 7 4.5958 -0.5621 -1.5755 21 6 5.3404 -1.2873 -0.5374 22 6 5.9153 -0.2888 0.4693 23 6 5.4858 -0.1441 -2.6668 24 6 6.2061 -1.3684 -3.2350 25 6 6.5169 0.8513 -2.1310 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 3.1352 1.1059 -0.0005 29 1 1.8001 1.8767 -0.8899 30 1 1.8002 1.8766 0.8900 31 1 1.4386 -2.0856 0.4335 32 1 2.9742 -1.1991 0.5888 33 1 -0.2199 -2.4150 -1.2529 34 1 -0.2466 -3.0966 -2.8970 35 1 1.0547 -5.0538 -2.1067 36 1 1.0813 -4.3722 -0.4625 37 1 0.1272 -7.8918 0.0496 38 1 4.6700 -1.9761 -0.0234 39 1 6.1538 -1.8477 -0.9982 40 1 6.4972 0.4661 -0.0595 41 1 5.1002 0.1931 1.0091 42 1 6.5583 -0.8142 1.1755 43 1 4.8984 0.3295 -3.4535 44 1 6.8669 -1.0582 -4.0444 45 1 6.7935 -1.8419 -2.4483 46 1 5.4715 -2.0776 -3.6167 47 1 7.0583 1.2979 -2.9650 48 1 6.0083 1.6334 -1.5675 49 1 7.2188 0.3315 -1.4788 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341979477.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:51:04 Heat of formation + Delta-G solvation = 102.446803 kcal Electronic energy + Delta-G solvation = -26821.107114 eV Core-core repulsion = 23399.555896 eV Total energy + Delta-G solvation = -3421.551218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.212 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.61691 -38.88768 -36.77848 -34.15226 -33.30747 -32.22530 -31.88282 -30.71171 -27.95419 -27.51342 -27.21028 -26.67675 -25.18633 -23.07619 -21.93663 -21.67121 -20.23309 -19.53388 -18.68998 -17.15969 -16.51960 -16.47676 -15.82590 -15.42971 -14.76433 -14.53404 -14.33450 -14.17145 -13.58528 -13.52213 -13.32287 -13.11795 -13.02818 -12.84225 -12.70888 -12.36907 -12.24199 -11.97145 -11.83116 -11.71946 -11.52093 -11.41488 -11.23619 -11.07966 -11.00930 -10.66523 -10.61766 -10.56618 -10.22238 -9.98070 -9.86888 -9.66684 -9.23606 -9.22736 -9.12061 -8.42408 -7.88937 -6.06661 -4.10678 1.88212 2.19740 2.80410 3.27823 3.31936 3.36126 3.39752 3.82928 4.40426 4.63566 4.66826 4.69940 4.81040 4.97627 5.00230 5.09408 5.17509 5.20929 5.29617 5.33003 5.37526 5.46205 5.50355 5.53009 5.53602 5.62458 5.63238 5.65562 5.81510 5.86330 5.89853 5.92667 5.98220 6.03402 6.17470 6.30981 6.35455 6.47859 6.50060 6.53356 6.70681 6.75076 6.81476 7.04934 7.51894 7.54809 7.68742 7.91031 8.28718 8.95700 9.27302 9.54172 11.04438 Molecular weight = 306.21amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.003940 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.049969 B = 7104.684484 C = 7724.331472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.150 4.150 3 C -0.114 4.114 4 C 0.145 3.855 5 N -0.469 5.469 6 C 0.214 3.786 7 C -0.032 4.032 8 C 0.032 3.968 9 C -0.523 4.523 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.893 3.107 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.299 5.299 18 N -0.322 5.322 19 C 0.338 3.662 20 N -0.445 5.445 21 C 0.038 3.962 22 C -0.160 4.160 23 C 0.096 3.904 24 C -0.194 4.194 25 C -0.149 4.149 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.025 0.975 36 H 0.012 0.988 37 H 0.261 0.739 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.092 0.908 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.773 17.757 3.038 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.171 4.171 4 C 0.022 3.978 5 N -0.162 5.162 6 C -0.053 4.053 7 C -0.072 4.072 8 C -0.006 4.006 9 C -0.561 4.561 10 H 0.078 0.922 11 C -0.142 4.142 12 N -0.531 5.531 13 Si 0.721 3.279 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.210 1.210 17 N -0.137 5.137 18 N -0.166 5.166 19 C -0.019 4.019 20 N -0.169 5.169 21 C -0.089 4.089 22 C -0.217 4.217 23 C -0.011 4.011 24 C -0.253 4.253 25 C -0.206 4.206 26 H 0.120 0.880 27 H 0.127 0.873 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.111 0.889 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.034 17.640 1.909 20.895 hybrid contribution -0.900 -0.838 1.315 1.800 sum 10.134 16.803 3.224 19.885 Atomic orbital electron populations 1.23990 0.95263 1.02772 0.98092 1.21826 0.95513 0.95284 1.02473 1.20804 1.00927 0.93965 1.01367 1.20898 1.01244 0.95723 0.79917 1.46212 1.15378 1.41151 1.13505 1.25488 0.98409 0.95301 0.86107 1.20461 0.85566 0.98735 1.02439 1.19072 0.97665 0.88117 0.95773 1.21178 0.92234 1.00318 1.42378 0.92247 1.25007 0.96574 0.97129 0.95511 1.69987 1.27105 1.12069 1.43927 0.86515 0.84170 0.79368 0.77844 1.19598 1.20919 1.21035 1.73995 1.01143 1.18258 1.20322 1.74467 1.14299 1.12503 1.15358 1.22388 0.89508 0.99397 0.90571 1.59024 1.08426 1.36390 1.13093 1.22434 0.97834 0.96045 0.92601 1.22183 1.01278 0.99853 0.98435 1.21580 0.92579 0.95720 0.91231 1.22661 1.01973 0.99623 1.01028 1.22134 0.98170 0.98923 1.01372 0.87976 0.87317 0.90875 0.92032 0.91901 0.87587 0.88629 0.91285 0.89423 0.95652 0.96917 0.92946 0.91254 0.91665 0.90459 0.92222 0.92167 0.89223 0.92072 0.92817 0.88948 0.91902 0.91571 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 13.77 29.01 0.40 -1.56 16 2 C -0.15 -1.84 5.64 -101.07 -0.57 -2.41 16 3 C -0.11 -1.18 10.05 36.00 0.36 -0.82 16 4 C 0.14 2.01 5.74 -5.19 -0.03 1.98 16 5 N -0.47 -7.95 2.75 -115.36 -0.32 -8.27 16 6 C 0.21 4.32 7.32 -154.01 -1.13 3.19 16 7 C -0.03 -0.66 5.36 -27.88 -0.15 -0.81 16 8 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 9 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 10 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 13 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 17 N -0.30 -6.54 12.18 32.99 0.40 -6.13 16 18 N -0.32 -6.32 9.17 30.32 0.28 -6.04 16 19 C 0.34 5.63 6.51 -318.87 -2.08 3.55 16 20 N -0.45 -5.63 4.32 -166.94 -0.72 -6.35 16 21 C 0.04 0.42 4.74 -3.83 -0.02 0.41 16 22 C -0.16 -1.31 9.79 37.16 0.36 -0.95 16 23 C 0.10 1.10 2.65 -67.71 -0.18 0.92 16 24 C -0.19 -2.35 8.56 37.16 0.32 -2.03 16 25 C -0.15 -1.21 7.65 37.16 0.28 -0.93 16 26 H 0.10 1.05 8.05 -52.49 -0.42 0.62 16 27 H 0.11 1.41 6.44 -52.48 -0.34 1.07 16 28 H 0.07 0.76 7.83 -51.93 -0.41 0.36 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.11 1.57 7.73 -51.93 -0.40 1.17 16 32 H 0.10 1.16 6.27 -51.93 -0.33 0.83 16 33 H 0.07 1.28 6.19 -51.93 -0.32 0.96 16 34 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 38 H 0.07 0.88 6.23 -51.93 -0.32 0.56 16 39 H 0.07 0.73 5.22 -51.93 -0.27 0.46 16 40 H 0.08 0.57 4.16 -51.93 -0.22 0.35 16 41 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 1.16 8.03 -51.93 -0.42 0.75 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.60 5.86 -51.93 -0.30 0.30 16 46 H 0.09 1.45 5.69 -51.92 -0.30 1.15 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.52 7.73 -51.93 -0.40 0.12 16 49 H 0.06 0.47 6.03 -51.93 -0.31 0.16 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -31.52 380.61 -9.98 -41.50 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.10 Total: 0.85 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.97 Total: -11.75 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.38 Total: -52.43 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.52 -9.98 -41.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341979477.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.946 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds