Wall clock time and date at job start Fri Apr 10 2020 21:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81404 * 102.99915 * 2 1 4 4 H 1.09001 * 109.47165 * 305.00160 * 3 2 1 5 5 C 1.53003 * 109.47003 * 65.00088 * 3 2 1 6 6 C 1.53003 * 109.46779 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46767 * 299.99526 * 6 5 3 8 8 C 1.52997 * 109.47360 * 60.00550 * 7 6 5 9 9 H 1.08997 * 109.47799 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.47294 * 59.99404 * 8 7 6 11 11 S 1.65599 * 119.99814 * 95.00047 * 10 8 7 12 12 O 1.42097 * 104.27788 * 308.93172 * 11 10 8 13 13 O 1.42100 * 104.27875 * 181.07357 * 11 10 8 14 14 C 1.81399 * 104.44808 * 65.00555 * 11 10 8 15 15 C 1.52998 * 109.47108 * 180.02562 * 14 11 10 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72505 * 16 15 14 19 19 N 1.31514 * 120.00481 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99745 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47209 * 90.00365 * 20 18 16 22 22 H 1.48506 * 109.47294 * 210.00213 * 20 18 16 23 23 H 1.48501 * 109.47275 * 330.00116 * 20 18 16 24 24 C 1.52998 * 109.46849 * 184.99802 * 3 2 1 25 25 H 1.08997 * 109.47381 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47222 * 300.00046 * 1 2 3 27 27 H 1.08993 * 109.47260 * 60.00098 * 1 2 3 28 28 H 1.08999 * 109.47581 * 59.99849 * 5 3 2 29 29 H 1.09002 * 109.47089 * 299.99746 * 5 3 2 30 30 H 1.09001 * 109.46998 * 180.02562 * 6 5 3 31 31 H 1.09001 * 109.47472 * 60.00022 * 6 5 3 32 32 H 1.08993 * 109.47467 * 299.99819 * 7 6 5 33 33 H 1.09008 * 109.46786 * 179.97438 * 7 6 5 34 34 H 0.97002 * 120.00525 * 275.00492 * 10 8 7 35 35 H 1.09000 * 109.47516 * 59.99948 * 14 11 10 36 36 H 1.09002 * 109.46834 * 299.99504 * 14 11 10 37 37 H 1.09001 * 109.47671 * 59.99908 * 15 14 11 38 38 H 1.08998 * 109.47454 * 299.99906 * 15 14 11 39 39 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.46939 * 60.00155 * 24 3 2 41 41 H 1.08999 * 109.47139 * 299.99785 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 -0.8418 5 6 1.7427 2.4016 1.3074 6 6 2.0864 3.8925 1.3071 7 6 3.6012 4.0667 1.1811 8 6 4.0805 3.4327 -0.1262 9 1 5.1596 3.5571 -0.2162 10 7 3.4180 4.0862 -1.2576 11 16 4.1678 5.3332 -2.0484 12 8 4.5487 6.2271 -1.0116 13 8 3.2367 5.7247 -3.0479 14 6 5.6317 4.5744 -2.8046 15 6 6.4181 5.6384 -3.5730 16 6 7.6347 5.0082 -4.2007 17 1 7.8278 3.9543 -4.0647 18 6 8.4984 5.7759 -4.9528 19 7 9.5598 5.2258 -5.5010 20 14 8.1602 7.5970 -5.1943 21 1 8.8140 8.3703 -4.1081 22 1 8.7025 8.0315 -6.5068 23 1 6.6951 7.8372 -5.1603 24 6 3.7369 1.9412 -0.1257 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 2.2353 1.9150 2.1492 29 1 0.6635 2.2779 1.3969 30 1 1.7453 4.3442 2.2386 31 1 1.5934 4.3789 0.4653 32 1 4.0941 3.5805 2.0229 33 1 3.8459 5.1289 1.1804 34 1 2.5402 3.7887 -1.5436 35 1 5.3196 3.7868 -3.4904 36 1 6.2636 4.1484 -2.0253 37 1 6.7304 6.4257 -2.8870 38 1 5.7866 6.0649 -4.3523 39 1 10.1671 5.7659 -6.0304 40 1 4.0784 1.4894 -1.0571 41 1 4.2295 1.4546 0.7162 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117375513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:57:44 Heat of formation + Delta-G solvation = -98.523167 kcal Electronic energy + Delta-G solvation = -21882.917411 eV Core-core repulsion = 18629.170701 eV Total energy + Delta-G solvation = -3253.746710 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 307.106 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -39.33073 -36.70433 -35.58184 -33.96849 -33.80094 -31.50147 -31.12784 -29.81121 -28.81056 -25.99569 -23.01509 -22.89037 -21.36750 -20.15485 -18.85090 -17.84189 -17.10831 -16.47186 -16.17869 -15.62101 -15.47830 -15.04604 -14.72953 -14.31645 -14.28198 -13.86672 -13.72957 -13.59349 -13.28868 -12.91828 -12.79145 -12.47730 -12.16513 -11.98866 -11.90339 -11.73682 -11.63955 -11.46848 -11.26898 -11.20829 -11.03365 -10.90484 -10.49664 -10.43367 -10.17273 -10.07359 -9.77050 -9.49478 -9.18088 -8.67174 -7.97794 -6.17307 -4.18727 0.64825 1.37048 2.26610 2.98768 3.25821 3.33303 3.37308 4.09049 4.25071 4.33481 4.35031 4.55899 4.64525 4.77963 4.79986 4.84164 4.88056 5.02621 5.09045 5.11713 5.14877 5.27177 5.31492 5.41017 5.49327 5.57777 5.64754 5.70400 5.73910 5.89942 5.97741 6.14405 6.18205 6.27200 6.80215 6.90450 6.99824 7.53800 8.35642 8.83828 9.42306 10.95071 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.003548 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.425414 B = 7888.825892 C = 8406.205653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.264 6.264 3 C -0.051 4.051 4 H 0.088 0.912 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.140 4.140 8 C 0.160 3.840 9 H 0.094 0.906 10 N -1.120 6.120 11 S 2.589 3.411 12 O -0.964 6.964 13 O -0.969 6.969 14 C -0.584 4.584 15 C -0.007 4.007 16 C -0.520 4.520 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.869 3.131 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 C -0.107 4.107 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.410 0.590 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.028 0.972 38 H 0.032 0.968 39 H 0.266 0.734 40 H 0.084 0.916 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.406 -8.347 14.728 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.035 6.035 3 C -0.179 4.179 4 H 0.106 0.894 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.179 4.179 8 C 0.051 3.949 9 H 0.112 0.888 10 N -0.877 5.877 11 S 2.686 3.314 12 O -0.953 6.953 13 O -0.959 6.959 14 C -0.717 4.717 15 C -0.046 4.046 16 C -0.559 4.559 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.533 5.533 20 Si 0.695 3.305 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 C -0.147 4.147 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.244 0.756 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.753 -8.280 14.652 23.747 hybrid contribution -0.931 1.120 -0.510 1.543 sum -17.684 -7.160 14.143 23.749 Atomic orbital electron populations 1.23388 0.94423 1.06343 1.04924 1.86930 1.07178 1.11518 1.97920 1.23190 1.00379 0.93047 1.01318 0.89396 1.21896 1.00734 0.96285 0.96393 1.21499 0.96603 0.95066 1.02252 1.22093 0.95999 1.02939 0.96897 1.20741 0.96875 0.91272 0.86027 0.88784 1.55908 1.30957 1.56208 1.44662 1.05648 0.76924 0.74434 0.74422 1.93549 1.84541 1.61446 1.55805 1.93559 1.60756 1.80861 1.60714 1.30306 1.16991 1.12382 1.11996 1.19405 0.96930 0.92854 0.95429 1.20849 1.05544 0.97707 1.31765 0.90396 1.24985 0.94683 0.98611 0.94828 1.69878 1.13236 1.36495 1.33718 0.86927 0.79636 0.85666 0.78226 1.19659 1.20757 1.18638 1.21690 0.92663 0.95900 1.04427 0.88245 0.90500 0.90500 0.90515 0.92075 0.91480 0.91655 0.90758 0.89634 0.75554 0.85450 0.85762 0.95366 0.94988 0.92368 0.89764 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.45 101.05 1.06 0.27 16 2 S -0.26 -2.39 21.79 -107.50 -2.34 -4.73 16 3 C -0.05 -0.42 2.47 -26.73 -0.07 -0.48 16 4 H 0.09 0.72 6.50 -51.92 -0.34 0.38 16 5 C -0.11 -0.84 5.11 -26.73 -0.14 -0.98 16 6 C -0.11 -0.95 5.77 -26.73 -0.15 -1.10 16 7 C -0.14 -1.32 5.64 -26.73 -0.15 -1.47 16 8 C 0.16 1.58 2.89 -67.90 -0.20 1.39 16 9 H 0.09 0.90 7.15 -51.93 -0.37 0.53 16 10 N -1.12 -12.76 4.63 -4.87 -0.02 -12.79 16 11 S 2.59 41.65 5.38 -107.50 -0.58 41.07 16 12 O -0.96 -17.75 17.11 -57.54 -0.98 -18.74 16 13 O -0.97 -18.53 18.08 -57.54 -1.04 -19.57 16 14 C -0.58 -10.29 5.90 37.16 0.22 -10.07 16 15 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 16 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 17 H 0.08 2.26 7.99 -52.49 -0.42 1.85 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 20 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 24 C -0.11 -0.92 4.93 -26.70 -0.13 -1.05 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.43 7.14 -51.92 -0.37 0.06 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.41 6.92 -51.93 -0.36 0.05 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.98 7.42 -51.92 -0.39 0.59 16 34 H 0.41 4.02 6.78 -34.47 -0.23 3.78 16 35 H 0.13 2.06 8.14 -51.92 -0.42 1.64 16 36 H 0.12 1.94 7.44 -51.92 -0.39 1.56 16 37 H 0.03 0.65 7.58 -51.93 -0.39 0.25 16 38 H 0.03 0.75 7.18 -51.93 -0.37 0.38 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 344.48 15.07 5.19 5.19 Total: -1.00 -34.04 344.48 -10.34 -44.38 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.57 Total: 1.20 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -0.10 Total: -26.54 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.75 Total: -38.97 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -2.02 Total: -38.31 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 39.26 SS G_CDS: -2.92 Total: 36.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.04 -10.34 -44.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117375513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.145 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds