Wall clock time and date at job start Fri Apr 10 2020 21:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81404 * 102.99915 * 2 1 4 4 H 1.09001 * 109.47165 * 305.00160 * 3 2 1 5 5 C 1.53003 * 109.47003 * 65.00088 * 3 2 1 6 6 C 1.53003 * 109.46779 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46767 * 299.99526 * 6 5 3 8 8 C 1.52997 * 109.47360 * 60.00550 * 7 6 5 9 9 H 1.08997 * 109.47799 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.47294 * 59.99404 * 8 7 6 11 11 S 1.65599 * 119.99814 * 95.00047 * 10 8 7 12 12 O 1.42097 * 104.27788 * 308.93172 * 11 10 8 13 13 O 1.42100 * 104.27875 * 181.07357 * 11 10 8 14 14 C 1.81399 * 104.44808 * 65.00555 * 11 10 8 15 15 C 1.52998 * 109.47108 * 180.02562 * 14 11 10 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72505 * 16 15 14 19 19 N 1.31514 * 120.00481 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99745 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47209 * 90.00365 * 20 18 16 22 22 H 1.48506 * 109.47294 * 210.00213 * 20 18 16 23 23 H 1.48501 * 109.47275 * 330.00116 * 20 18 16 24 24 C 1.52998 * 109.46849 * 184.99802 * 3 2 1 25 25 H 1.08997 * 109.47381 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47222 * 300.00046 * 1 2 3 27 27 H 1.08993 * 109.47260 * 60.00098 * 1 2 3 28 28 H 1.08999 * 109.47581 * 59.99849 * 5 3 2 29 29 H 1.09002 * 109.47089 * 299.99746 * 5 3 2 30 30 H 1.09001 * 109.46998 * 180.02562 * 6 5 3 31 31 H 1.09001 * 109.47472 * 60.00022 * 6 5 3 32 32 H 1.08993 * 109.47467 * 299.99819 * 7 6 5 33 33 H 1.09008 * 109.46786 * 179.97438 * 7 6 5 34 34 H 0.97002 * 120.00525 * 275.00492 * 10 8 7 35 35 H 1.09000 * 109.47516 * 59.99948 * 14 11 10 36 36 H 1.09002 * 109.46834 * 299.99504 * 14 11 10 37 37 H 1.09001 * 109.47671 * 59.99908 * 15 14 11 38 38 H 1.08998 * 109.47454 * 299.99906 * 15 14 11 39 39 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.46939 * 60.00155 * 24 3 2 41 41 H 1.08999 * 109.47139 * 299.99785 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 -0.8418 5 6 1.7427 2.4016 1.3074 6 6 2.0864 3.8925 1.3071 7 6 3.6012 4.0667 1.1811 8 6 4.0805 3.4327 -0.1262 9 1 5.1596 3.5571 -0.2162 10 7 3.4180 4.0862 -1.2576 11 16 4.1678 5.3332 -2.0484 12 8 4.5487 6.2271 -1.0116 13 8 3.2367 5.7247 -3.0479 14 6 5.6317 4.5744 -2.8046 15 6 6.4181 5.6384 -3.5730 16 6 7.6347 5.0082 -4.2007 17 1 7.8278 3.9543 -4.0647 18 6 8.4984 5.7759 -4.9528 19 7 9.5598 5.2258 -5.5010 20 14 8.1602 7.5970 -5.1943 21 1 8.8140 8.3703 -4.1081 22 1 8.7025 8.0315 -6.5068 23 1 6.6951 7.8372 -5.1603 24 6 3.7369 1.9412 -0.1257 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 2.2353 1.9150 2.1492 29 1 0.6635 2.2779 1.3969 30 1 1.7453 4.3442 2.2386 31 1 1.5934 4.3789 0.4653 32 1 4.0941 3.5805 2.0229 33 1 3.8459 5.1289 1.1804 34 1 2.5402 3.7887 -1.5436 35 1 5.3196 3.7868 -3.4904 36 1 6.2636 4.1484 -2.0253 37 1 6.7304 6.4257 -2.8870 38 1 5.7866 6.0649 -4.3523 39 1 10.1671 5.7659 -6.0304 40 1 4.0784 1.4894 -1.0571 41 1 4.2295 1.4546 0.7162 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117375513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:57:38 Heat of formation + Delta-G solvation = -122.169169 kcal Electronic energy + Delta-G solvation = -21883.942778 eV Core-core repulsion = 18629.170701 eV Total energy + Delta-G solvation = -3254.772078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 307.106 amu Computer time = 4.05 seconds Orbital eigenvalues (eV) -40.08288 -38.11756 -37.00238 -35.88660 -34.65744 -33.46584 -31.80726 -30.52286 -29.40537 -27.88201 -23.71011 -23.59565 -23.18658 -21.08784 -19.96964 -19.36701 -18.67758 -17.34880 -17.24144 -16.97502 -16.36800 -16.31187 -16.15588 -15.43402 -15.26732 -14.91976 -14.81648 -14.41740 -14.28208 -13.99577 -13.81731 -13.71626 -13.23475 -13.15053 -13.12342 -13.04492 -12.92784 -12.74356 -12.67115 -12.48563 -12.22351 -11.95184 -11.77730 -11.67601 -11.57667 -11.25308 -11.14720 -10.83907 -10.71666 -10.27556 -8.65397 -8.35971 -6.41694 -0.68701 0.76133 1.32394 1.34352 1.44299 1.67607 1.82254 2.29977 2.77262 2.98086 3.26730 3.60781 3.69629 3.80638 3.94930 4.07302 4.13890 4.20321 4.30946 4.35204 4.37022 4.38990 4.45476 4.57205 4.61669 4.70584 4.90368 4.95113 5.08101 5.08844 5.10239 5.12755 5.20699 5.30759 5.39400 5.47989 5.49610 6.09647 6.17493 6.64703 7.22810 8.79609 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.003548 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.425414 B = 7888.825892 C = 8406.205653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.308 6.308 3 C -0.045 4.045 4 H 0.088 0.912 5 C -0.106 4.106 6 C -0.114 4.114 7 C -0.141 4.141 8 C 0.152 3.848 9 H 0.098 0.902 10 N -1.102 6.102 11 S 2.622 3.378 12 O -0.984 6.984 13 O -0.997 6.997 14 C -0.592 4.592 15 C -0.017 4.017 16 C -0.527 4.527 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.940 5.940 20 Si 0.925 3.075 21 H -0.260 1.260 22 H -0.275 1.275 23 H -0.250 1.250 24 C -0.103 4.103 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.421 0.579 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.033 0.967 38 H 0.030 0.970 39 H 0.269 0.731 40 H 0.079 0.921 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.213 -8.160 16.085 26.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.079 6.079 3 C -0.174 4.174 4 H 0.106 0.894 5 C -0.145 4.145 6 C -0.153 4.153 7 C -0.180 4.180 8 C 0.043 3.957 9 H 0.116 0.884 10 N -0.864 5.864 11 S 2.717 3.283 12 O -0.973 6.973 13 O -0.987 6.987 14 C -0.723 4.723 15 C -0.056 4.056 16 C -0.566 4.566 17 H 0.068 0.932 18 C -0.186 4.186 19 N -0.580 5.580 20 Si 0.748 3.252 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.173 1.173 24 C -0.143 4.143 25 H 0.126 0.874 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.258 0.742 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.564 -8.100 16.006 25.816 hybrid contribution -0.406 0.927 -0.866 1.332 sum -18.970 -7.173 15.140 25.309 Atomic orbital electron populations 1.23433 0.91805 1.07190 1.05706 1.87083 1.10191 1.12621 1.98027 1.23167 0.99977 0.92316 1.01891 0.89390 1.21842 1.01409 0.95370 0.95917 1.21498 0.95616 0.95724 1.02497 1.22099 0.97120 1.01716 0.97099 1.21000 0.97101 0.92037 0.85531 0.88406 1.55477 1.31009 1.55455 1.44417 1.04446 0.75791 0.74425 0.73590 1.93526 1.84841 1.62736 1.56232 1.93516 1.61267 1.81842 1.62086 1.30320 1.18068 1.11398 1.12489 1.19365 0.95887 0.94428 0.95945 1.21190 1.07083 0.96741 1.31558 0.93232 1.25878 0.94537 1.03375 0.94777 1.70008 1.14547 1.38392 1.35087 0.86023 0.80273 0.80199 0.78725 1.18423 1.20031 1.17334 1.21656 0.93243 0.94671 1.04702 0.87418 0.89346 0.90054 0.90121 0.91048 0.90495 0.92390 0.88938 0.91683 0.74217 0.84299 0.84028 0.94921 0.95176 0.92144 0.90217 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.45 113.37 1.19 -0.02 16 2 S -0.31 -5.05 21.79 -56.49 -1.23 -6.28 16 3 C -0.04 -0.64 2.47 30.59 0.08 -0.57 16 4 H 0.09 1.25 6.50 -2.39 -0.02 1.23 16 5 C -0.11 -1.28 5.11 30.60 0.16 -1.13 16 6 C -0.11 -1.61 5.77 30.59 0.18 -1.44 16 7 C -0.14 -2.37 5.64 30.59 0.17 -2.20 16 8 C 0.15 2.71 2.89 45.01 0.13 2.84 16 9 H 0.10 1.69 7.15 -2.39 -0.02 1.67 16 10 N -1.10 -23.19 4.63 -169.31 -0.78 -23.97 16 11 S 2.62 80.82 5.38 -56.49 -0.30 80.52 16 12 O -0.98 -34.92 17.11 -127.65 -2.18 -37.10 16 13 O -1.00 -36.86 18.08 -127.65 -2.31 -39.17 16 14 C -0.59 -20.32 5.90 71.98 0.42 -19.89 16 15 C -0.02 -0.79 4.05 29.85 0.12 -0.67 16 16 C -0.53 -29.54 9.66 25.60 0.25 -29.30 16 17 H 0.05 2.97 7.99 -2.91 -0.02 2.94 16 18 C 0.01 0.74 5.47 84.65 0.46 1.20 16 19 N -0.94 -57.76 13.96 21.45 0.30 -57.46 16 20 Si 0.93 43.68 27.47 68.60 1.88 45.56 16 21 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.25 -11.19 6.53 99.48 0.65 -10.54 16 24 C -0.10 -1.57 4.93 30.61 0.15 -1.42 16 25 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 0.74 7.14 -2.39 -0.02 0.72 16 27 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.74 6.92 -2.39 -0.02 0.72 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.91 7.45 -2.39 -0.02 0.89 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.39 7.42 -2.38 -0.02 1.37 16 34 H 0.42 7.41 6.78 -96.75 -0.66 6.75 16 35 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 36 H 0.14 4.28 7.44 -2.39 -0.02 4.26 16 37 H 0.03 1.47 7.58 -2.39 -0.02 1.45 16 38 H 0.03 1.39 7.18 -2.39 -0.02 1.37 16 39 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -73.08 344.48 -1.02 -74.10 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.30 Total: 16.39 kcal Atomic # 6 Polarization: -55.89 SS G_CDS: 3.30 Total: -52.59 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -0.48 Total: -81.43 kcal Atomic # 8 Polarization: -71.78 SS G_CDS: -4.49 Total: -76.27 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Atomic # 16 Polarization: 75.77 SS G_CDS: -1.53 Total: 74.24 kcal Total: -73.08 -1.02 -74.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117375513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.073 kcal (2) G-P(sol) polarization free energy of solvation -73.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.05 seconds