Wall clock time and date at job start Fri Apr 10 2020 21:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46917 * 2 1 4 4 N 1.46499 * 109.47226 * 119.99879 * 2 1 3 5 5 C 1.34782 * 119.99841 * 155.00457 * 4 2 1 6 6 S 1.71194 * 120.00050 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99619 * 180.02562 * 5 4 2 8 8 N 1.40098 * 119.99951 * 359.97438 * 7 5 4 9 9 C 1.29838 * 119.99640 * 180.02562 * 8 7 5 10 10 C 1.47353 * 119.99727 * 179.97438 * 9 8 7 11 11 C 1.39812 * 120.08721 * 179.97438 * 10 9 8 12 12 C 1.37716 * 119.91300 * 180.02562 * 11 10 9 13 13 C 1.39080 * 120.08694 * 359.97438 * 12 11 10 14 14 O 1.35659 * 119.90901 * 179.97438 * 13 12 11 15 15 C 1.34807 * 117.00149 * 5.54965 * 14 13 12 16 16 H 1.08003 * 120.00583 * 354.94762 * 15 14 13 17 17 C 1.38633 * 119.99880 * 174.94529 * 15 14 13 18 18 N 1.31567 * 120.00195 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99992 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47040 * 89.99829 * 19 17 15 21 21 H 1.48495 * 109.46866 * 209.99643 * 19 17 15 22 22 H 1.48496 * 109.46817 * 329.99931 * 19 17 15 23 23 C 1.39071 * 120.17735 * 0.25630 * 13 12 11 24 24 C 1.37722 * 120.08447 * 359.48710 * 23 13 12 25 25 H 1.08997 * 109.47350 * 300.00241 * 1 2 3 26 26 H 1.08998 * 109.46914 * 59.99950 * 1 2 3 27 27 H 1.09000 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47295 * 240.00146 * 2 1 3 29 29 H 1.09008 * 109.46750 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47369 * 299.99771 * 3 2 1 31 31 H 1.08992 * 109.47376 * 60.00228 * 3 2 1 32 32 H 0.97003 * 119.99839 * 335.00038 * 4 2 1 33 33 H 0.97000 * 119.99370 * 179.97438 * 7 5 4 34 34 H 1.07999 * 119.99744 * 359.97438 * 9 8 7 35 35 H 1.08004 * 120.04559 * 0.02562 * 11 10 9 36 36 H 1.08003 * 119.95965 * 179.97438 * 12 11 10 37 37 H 0.97006 * 120.00279 * 180.02562 * 18 17 15 38 38 H 1.07995 * 119.95533 * 179.72194 * 23 13 12 39 39 H 1.08003 * 120.04008 * 180.22997 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2404 -1.2591 1.1944 6 16 4.2216 -1.1747 -0.2059 7 7 3.6894 -1.8948 2.2947 8 7 2.8861 -1.9643 3.4404 9 6 3.3190 -2.5763 4.5005 10 6 2.4743 -2.6489 5.7058 11 6 2.9383 -3.3079 6.8482 12 6 2.1457 -3.3741 7.9725 13 6 0.8854 -2.7859 7.9726 14 8 0.1074 -2.8536 9.0819 15 6 0.6582 -3.4025 10.1831 16 1 1.6454 -3.8377 10.1336 17 6 -0.0427 -3.4084 11.3792 18 7 -1.2451 -2.8778 11.4397 19 14 0.7208 -4.1684 12.9054 20 1 1.4850 -3.1320 13.6451 21 1 -0.3518 -4.7097 13.7782 22 1 1.6360 -5.2675 12.5060 23 6 0.4183 -2.1335 6.8367 24 6 1.2070 -2.0585 5.7102 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.4622 -0.7386 1.9895 33 1 4.5688 -2.3043 2.2933 34 1 4.2980 -3.0322 4.4989 35 1 3.9171 -3.7646 6.8490 36 1 2.5032 -3.8833 8.8552 37 1 -1.7354 -2.8816 12.2768 38 1 -0.5627 -1.6819 6.8392 39 1 0.8450 -1.5485 4.8297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321544383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:53:32 Heat of formation + Delta-G solvation = 28.409266 kcal Electronic energy + Delta-G solvation = -21316.034396 eV Core-core repulsion = 17964.640689 eV Total energy + Delta-G solvation = -3351.393707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.87045 -40.33764 -38.72307 -37.69850 -34.91581 -34.23478 -32.14599 -31.93135 -30.11263 -28.18088 -27.54632 -25.43833 -23.92201 -23.35015 -22.89778 -21.64479 -20.01262 -19.41067 -19.13497 -18.56044 -17.19559 -16.67765 -16.38586 -16.21830 -15.98694 -15.89308 -15.61218 -15.20127 -15.12963 -14.51479 -14.27081 -14.10602 -13.57512 -13.46925 -13.16242 -13.10672 -12.84939 -12.80602 -12.58887 -12.50122 -12.40094 -12.12725 -12.09068 -11.84318 -11.48786 -11.18359 -10.86535 -10.20478 -9.86712 -9.20233 -8.89363 -8.72726 -8.51579 -6.18289 -0.32184 0.44922 0.53528 0.60727 1.37853 1.40320 1.53949 1.54601 1.57844 1.92129 2.15901 2.84512 3.17021 3.42818 3.65431 3.80996 3.94481 4.06242 4.13430 4.21946 4.30089 4.45862 4.54205 4.69367 4.71693 4.81101 4.89141 4.95601 4.96290 5.13660 5.14145 5.21756 5.24640 5.34455 5.48400 5.56335 5.64443 5.68385 5.98209 6.07916 6.15262 6.81302 6.93238 7.69804 8.70445 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.028784 B = 0.002315 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.524516 B =12093.883785 C =12908.470226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 C -0.158 4.158 4 N -0.648 5.648 5 C 0.610 3.390 6 S -0.714 6.714 7 N -0.530 5.530 8 N -0.326 5.326 9 C 0.197 3.803 10 C -0.160 4.160 11 C -0.015 4.015 12 C -0.250 4.250 13 C 0.138 3.862 14 O -0.221 6.221 15 C -0.413 4.413 16 H 0.111 0.889 17 C -0.020 4.020 18 N -0.916 5.916 19 Si 1.018 2.982 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.248 1.248 23 C -0.214 4.214 24 C -0.019 4.019 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.417 0.583 33 H 0.419 0.581 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.130 0.870 37 H 0.274 0.726 38 H 0.116 0.884 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.649 2.460 -14.571 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.025 3.975 3 C -0.216 4.216 4 N -0.276 5.276 5 C 0.245 3.755 6 S -0.590 6.590 7 N -0.252 5.252 8 N -0.134 5.134 9 C -0.011 4.011 10 C -0.164 4.164 11 C -0.035 4.035 12 C -0.269 4.269 13 C 0.085 3.915 14 O -0.125 6.125 15 C -0.489 4.489 16 H 0.129 0.871 17 C -0.219 4.219 18 N -0.552 5.552 19 Si 0.837 3.163 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.172 1.172 23 C -0.234 4.234 24 C -0.039 4.039 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.257 0.743 33 H 0.264 0.736 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.148 0.852 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.976 3.234 -15.814 17.212 hybrid contribution 0.305 -0.891 2.209 2.401 sum 6.280 2.343 -13.606 15.167 Atomic orbital electron populations 1.22092 0.91370 1.03307 1.04620 1.21621 0.95645 0.93567 0.86656 1.22115 1.01688 0.94474 1.03342 1.45314 1.13294 1.50291 1.18662 1.21592 0.86751 0.79809 0.87363 1.93674 1.58531 1.83226 1.23536 1.46031 1.18397 1.52433 1.08317 1.74674 1.20950 1.22540 0.95194 1.24502 0.97832 0.89937 0.88787 1.18069 0.95695 1.09392 0.93224 1.21232 0.99146 0.93467 0.89669 1.21229 0.95602 1.08586 1.01498 1.20184 0.90830 0.92600 0.87922 1.83924 1.39508 1.71083 1.18009 1.21928 1.03515 1.37650 0.85804 0.87133 1.26614 0.96092 0.97307 1.01852 1.70179 1.12814 1.43728 1.28529 0.84586 0.77881 0.78650 0.75181 1.18890 1.19996 1.17176 1.20370 1.02467 1.07535 0.92989 1.21079 0.92325 0.94521 0.95988 0.91141 0.88478 0.91933 0.88376 0.93287 0.89302 0.92096 0.74349 0.73620 0.82402 0.81905 0.85237 0.91681 0.86626 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.38 71.98 0.68 -0.99 16 2 C 0.13 2.07 2.95 44.99 0.13 2.20 16 3 C -0.16 -2.45 9.43 71.98 0.68 -1.77 16 4 N -0.65 -12.00 5.04 -329.57 -1.66 -13.67 16 5 C 0.61 13.92 7.94 179.05 1.42 15.34 16 6 S -0.71 -21.44 28.14 -56.49 -1.59 -23.03 16 7 N -0.53 -10.22 6.26 -59.11 -0.37 -10.59 16 8 N -0.33 -6.21 9.46 -52.22 -0.49 -6.70 16 9 C 0.20 3.39 10.75 87.39 0.94 4.33 16 10 C -0.16 -3.83 5.87 -20.12 -0.12 -3.95 16 11 C -0.01 -0.38 9.78 22.53 0.22 -0.16 16 12 C -0.25 -8.89 9.15 22.35 0.20 -8.69 16 13 C 0.14 5.98 6.65 22.67 0.15 6.13 16 14 O -0.22 -12.07 9.75 -21.49 -0.21 -12.28 16 15 C -0.41 -21.84 9.48 67.91 0.64 -21.20 16 16 H 0.11 5.20 5.19 -2.91 -0.02 5.18 16 17 C -0.02 -1.05 5.49 84.83 0.47 -0.59 16 18 N -0.92 -52.89 13.67 21.61 0.30 -52.60 16 19 Si 1.02 39.36 29.55 68.60 2.03 41.38 16 20 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 21 H -0.28 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 23 C -0.21 -7.88 9.97 22.35 0.22 -7.66 16 24 C -0.02 -0.53 9.57 22.53 0.22 -0.32 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 1.97 6.82 -2.39 -0.02 1.95 16 29 H 0.05 1.03 7.49 -2.38 -0.02 1.01 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.42 6.99 7.64 -92.71 -0.71 6.28 16 33 H 0.42 6.89 8.63 -213.32 -1.84 5.05 16 34 H 0.16 1.53 8.02 -2.91 -0.02 1.51 16 35 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.13 4.67 5.62 -2.91 -0.02 4.65 16 37 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 38 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.14 3.34 7.55 -2.91 -0.02 3.32 16 Total: -1.00 -70.45 351.69 2.40 -68.06 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -1.45 Total: 26.75 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 5.85 Total: -17.32 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -2.23 Total: -83.56 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.21 Total: -12.28 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: -21.44 SS G_CDS: -1.59 Total: -23.03 kcal Total: -70.45 2.40 -68.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321544383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.467 kcal (2) G-P(sol) polarization free energy of solvation -70.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds