Wall clock time and date at job start Fri Apr 10 2020 21:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35378 * 117.00272 * 2 1 4 4 N 1.32416 * 119.01991 * 179.97438 * 3 2 1 5 5 C 1.32076 * 120.91219 * 180.02562 * 4 3 2 6 6 C 1.40003 * 118.98886 * 0.02562 * 5 4 3 7 7 C 1.47857 * 120.88513 * 179.97438 * 6 5 4 8 8 N 1.31595 * 119.44805 * 316.48774 * 7 6 5 9 9 C 1.33668 * 121.74179 * 179.71185 * 8 7 6 10 10 C 1.40478 * 120.97860 * 180.32589 * 9 8 7 11 11 C 1.36243 * 119.70689 * 180.27577 * 10 9 8 12 12 C 1.39164 * 121.75438 * 359.94844 * 11 10 9 13 13 C 1.36139 * 121.46277 * 0.03020 * 12 11 10 14 14 C 1.40778 * 119.47224 * 359.97438 * 13 12 11 15 15 C 1.40020 * 121.41122 * 180.02562 * 14 13 12 16 16 C 1.40368 * 117.97399 * 179.97438 * 15 14 13 17 17 C 1.40824 * 120.41710 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00885 * 151.66119 * 17 16 15 19 19 C 1.40095 * 119.99947 * 331.66355 * 17 16 15 20 20 N 1.30772 * 119.99512 * 347.64891 * 19 17 16 21 21 Si 1.86792 * 120.00229 * 167.64041 * 19 17 16 22 22 H 1.48499 * 109.47149 * 60.00379 * 21 19 17 23 23 H 1.48505 * 109.47192 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47557 * 300.00279 * 21 19 17 25 25 C 1.40012 * 118.23506 * 0.24977 * 6 5 4 26 26 N 1.32070 * 118.98610 * 359.51283 * 25 6 5 27 27 H 1.08998 * 109.47322 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47252 * 300.00143 * 1 2 3 29 29 H 1.09002 * 109.47263 * 59.99744 * 1 2 3 30 30 H 1.07992 * 120.50476 * 179.97438 * 5 4 3 31 31 H 1.07999 * 120.14563 * 0.25039 * 10 9 8 32 32 H 1.07997 * 119.12489 * 179.97438 * 11 10 9 33 33 H 1.07999 * 119.26917 * 180.02562 * 12 11 10 34 34 H 1.07993 * 120.26037 * 179.97438 * 13 12 11 35 35 H 1.07996 * 121.01612 * 359.96360 * 15 14 13 36 36 H 0.97004 * 119.99452 * 179.97438 * 20 19 17 37 37 H 1.07994 * 120.50572 * 179.73122 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2062 0.0000 4 7 3.3670 1.2528 0.0005 5 6 4.0052 2.4091 0.0010 6 6 3.2609 3.5949 0.0016 7 6 3.9321 4.9124 0.0028 8 7 4.9660 5.1110 0.7923 9 6 5.6104 6.2816 0.8260 10 6 6.7166 6.4739 1.6702 11 6 7.3508 7.6796 1.6880 12 6 6.9337 8.7384 0.8869 13 6 5.8693 8.6175 0.0468 14 6 5.1724 7.3959 -0.0168 15 6 4.0726 7.2266 -0.8667 16 6 3.4313 5.9780 -0.8728 17 6 2.3199 5.7514 -1.7073 18 1 2.1099 4.7555 -2.0688 19 6 1.4864 6.8178 -2.0689 20 7 1.5879 7.9656 -1.4505 21 14 0.2304 6.6003 -3.4342 22 1 -0.7145 5.5144 -3.0692 23 1 -0.5203 7.8677 -3.6228 24 1 0.9277 6.2461 -4.6966 25 6 1.8640 3.5002 0.0069 26 7 1.3036 2.3043 0.0014 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 5.0847 2.4395 0.0019 31 1 7.0627 5.6697 2.3025 32 1 8.2000 7.8173 2.3408 33 1 7.4662 9.6769 0.9328 34 1 5.5621 9.4519 -0.5660 35 1 3.7281 8.0321 -1.4981 36 1 1.0110 8.7041 -1.7011 37 1 1.2541 4.3914 0.0119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239846150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:53:36 Heat of formation + Delta-G solvation = 42.107515 kcal Electronic energy + Delta-G solvation = -23845.979660 eV Core-core repulsion = 20359.736003 eV Total energy + Delta-G solvation = -3486.243658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.106 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.22761 -40.65636 -39.32791 -37.65653 -36.01165 -34.89128 -33.44380 -33.21978 -31.06504 -30.06132 -28.39802 -27.48565 -25.55221 -25.39750 -23.60189 -23.06193 -22.25091 -19.94026 -19.70101 -18.89481 -18.28405 -17.80717 -17.37262 -17.16348 -16.41331 -16.02235 -15.47731 -15.34334 -15.20230 -14.86585 -14.71213 -14.59467 -14.48029 -14.24358 -13.69296 -13.47204 -12.96301 -12.87842 -12.80673 -12.55886 -12.48673 -12.31295 -12.14979 -11.99570 -11.91854 -11.63429 -11.30265 -10.74558 -10.35721 -10.26219 -9.96615 -9.12029 -8.83068 -8.71554 -6.42768 -0.48551 0.01510 0.15419 0.40921 1.35641 1.39239 1.48089 1.58674 1.66841 2.11711 2.19937 2.71026 2.90304 3.02618 3.35833 3.66206 3.68637 3.73434 4.01022 4.03160 4.28273 4.36797 4.41356 4.44454 4.57877 4.63273 4.65991 4.71770 4.87861 4.96693 5.04881 5.09788 5.20033 5.37236 5.54738 5.62883 5.72394 5.78508 5.87683 5.93704 6.09844 6.23047 6.44465 6.63905 6.69177 6.98129 7.36175 8.15960 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.011124 B = 0.005686 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.535559 B = 4923.612661 C = 7230.207091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.302 6.302 3 C 0.475 3.525 4 N -0.540 5.540 5 C 0.207 3.793 6 C -0.151 4.151 7 C 0.111 3.889 8 N -0.464 5.464 9 C 0.004 3.996 10 C -0.075 4.075 11 C -0.159 4.159 12 C -0.103 4.103 13 C -0.149 4.149 14 C -0.065 4.065 15 C -0.188 4.188 16 C 0.057 3.943 17 C -0.450 4.450 18 H 0.085 0.915 19 C 0.043 3.957 20 N -0.800 5.800 21 Si 0.972 3.028 22 H -0.255 1.255 23 H -0.265 1.265 24 H -0.263 1.263 25 C 0.216 3.784 26 N -0.567 5.567 27 H 0.137 0.863 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.188 0.812 31 H 0.131 0.869 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.296 0.704 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 -3.391 0.971 3.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.204 6.204 3 C 0.173 3.827 4 N -0.266 5.266 5 C 0.041 3.959 6 C -0.157 4.157 7 C -0.044 4.044 8 N -0.171 5.171 9 C -0.119 4.119 10 C -0.094 4.094 11 C -0.179 4.179 12 C -0.121 4.121 13 C -0.168 4.168 14 C -0.068 4.068 15 C -0.214 4.214 16 C 0.052 3.948 17 C -0.479 4.479 18 H 0.103 0.897 19 C -0.176 4.176 20 N -0.424 5.424 21 Si 0.793 3.207 22 H -0.179 1.179 23 H -0.190 1.190 24 H -0.187 1.187 25 C 0.050 3.950 26 N -0.296 5.296 27 H 0.155 0.845 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.205 0.795 31 H 0.149 0.851 32 H 0.166 0.834 33 H 0.163 0.837 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.595 -4.990 1.590 5.271 hybrid contribution -0.751 1.831 -1.148 2.288 sum -1.347 -3.159 0.442 3.462 Atomic orbital electron populations 1.23271 0.73926 1.05483 1.02886 1.86030 1.25218 1.22064 1.87111 1.21009 0.86490 0.85417 0.89815 1.67567 1.07849 1.30371 1.20771 1.23386 1.00992 0.84389 0.87170 1.19965 0.95175 0.93580 1.06930 1.20729 0.95114 0.92955 0.95642 1.67395 1.07215 1.22873 1.19600 1.19786 1.00065 0.89490 1.02555 1.20804 0.93308 0.98354 0.96905 1.20813 1.02203 0.92720 1.02205 1.20993 0.96074 0.99684 0.95318 1.21088 0.97918 0.95971 1.01811 1.20011 0.95748 0.94736 0.96258 1.21506 0.96757 0.99421 1.03741 1.19416 0.92659 0.91395 0.91345 1.19652 1.07382 0.96286 1.24535 0.89673 1.26677 0.99604 0.93729 0.97580 1.69786 1.34442 1.03549 1.34629 0.85354 0.77792 0.79369 0.78188 1.17893 1.18950 1.18732 1.23342 0.92005 0.94120 0.85555 1.68103 1.40846 0.98818 1.21841 0.84538 0.91937 0.92073 0.79500 0.85112 0.83396 0.83678 0.86099 0.86150 0.89323 0.80314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.85 10.35 113.37 1.17 2.02 16 2 O -0.30 -9.50 10.55 -86.70 -0.91 -10.42 16 3 C 0.47 17.34 8.48 180.51 1.53 18.87 16 4 N -0.54 -20.41 10.45 -312.41 -3.26 -23.67 16 5 C 0.21 7.74 10.96 85.08 0.93 8.67 16 6 C -0.15 -6.17 5.29 -19.87 -0.11 -6.28 16 7 C 0.11 5.12 6.59 43.95 0.29 5.41 16 8 N -0.46 -21.24 10.08 -169.20 -1.71 -22.94 16 9 C 0.00 0.18 6.74 41.54 0.28 0.46 16 10 C -0.08 -2.76 9.98 22.35 0.22 -2.54 16 11 C -0.16 -4.93 9.90 22.03 0.22 -4.71 16 12 C -0.10 -3.25 9.91 22.00 0.22 -3.03 16 13 C -0.15 -5.73 9.80 22.40 0.22 -5.51 16 14 C -0.07 -2.99 5.87 -20.09 -0.12 -3.11 16 15 C -0.19 -9.31 8.51 23.22 0.20 -9.11 16 16 C 0.06 2.77 5.68 -19.91 -0.11 2.66 16 17 C -0.45 -20.92 6.81 23.35 0.16 -20.77 16 18 H 0.09 3.84 6.51 -2.91 -0.02 3.83 16 19 C 0.04 1.89 5.24 85.30 0.45 2.33 16 20 N -0.80 -36.94 10.92 21.85 0.24 -36.70 16 21 Si 0.97 33.95 29.58 68.60 2.03 35.98 16 22 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 23 H -0.27 -8.82 7.11 99.48 0.71 -8.11 16 24 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 25 C 0.22 8.45 9.15 85.09 0.78 9.23 16 26 N -0.57 -20.81 9.19 -312.41 -2.87 -23.68 16 27 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 1.35 8.09 -2.39 -0.02 1.33 16 29 H 0.06 1.35 8.09 -2.39 -0.02 1.33 16 30 H 0.19 6.33 8.06 -2.91 -0.02 6.31 16 31 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 32 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 33 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 35 H 0.12 6.11 6.32 -2.91 -0.02 6.09 16 36 H 0.30 12.35 8.29 -92.70 -0.77 11.58 16 37 H 0.18 7.12 6.83 -2.91 -0.02 7.10 16 Total: -1.00 -57.66 323.92 0.96 -56.69 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 1.12 Total: 30.13 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 6.33 Total: -5.39 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -7.60 Total: -106.99 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.91 Total: -10.42 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Total: -57.66 0.96 -56.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239846150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.800 kcal (2) G-P(sol) polarization free energy of solvation -57.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds