Wall clock time and date at job start Fri Apr 10 2020 21:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34773 * 120.00395 * 2 1 4 4 O 1.21528 * 120.00326 * 0.02562 * 3 2 1 5 5 C 1.48064 * 120.00021 * 179.97438 * 3 2 1 6 6 C 1.39445 * 119.58547 * 179.97438 * 5 3 2 7 7 C 1.38298 * 119.18086 * 180.02562 * 6 5 3 8 8 C 1.39794 * 118.38544 * 0.02562 * 7 6 5 9 9 C 1.48231 * 120.44482 * 179.97438 * 8 7 6 10 10 C 1.39859 * 119.54377 * 359.97438 * 9 8 7 11 11 C 1.37705 * 121.16585 * 179.97438 * 10 9 8 12 12 C 1.39578 * 120.19661 * 0.04887 * 11 10 9 13 13 C 1.43201 * 120.44978 * 179.97438 * 12 11 10 14 14 N 9.58012 * 160.95732 * 0.06660 * 5 1 2 15 15 C 1.46531 * 119.09821 * 359.97438 * 12 11 10 16 16 C 1.40837 * 120.55243 * 180.02562 * 15 12 11 17 17 H 1.08005 * 119.99368 * 332.69620 * 16 15 12 18 18 C 1.40241 * 120.00392 * 152.42085 * 16 15 12 19 19 N 1.30655 * 120.00099 * 163.05577 * 18 16 15 20 20 Si 1.86800 * 119.99665 * 343.05961 * 18 16 15 21 21 H 1.48504 * 109.47048 * 95.11285 * 20 18 16 22 22 H 1.48494 * 109.46957 * 215.10939 * 20 18 16 23 23 H 1.48502 * 109.47403 * 335.11228 * 20 18 16 24 24 C 1.38655 * 119.54157 * 180.30579 * 9 8 7 25 25 C 1.39731 * 119.11142 * 0.27572 * 8 7 6 26 26 N 1.31343 * 120.72552 * 359.42116 * 25 8 7 27 27 H 1.08997 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47225 * 300.00529 * 1 2 3 29 29 H 1.09000 * 109.47123 * 59.99928 * 1 2 3 30 30 H 0.97005 * 119.99466 * 179.97438 * 2 1 3 31 31 H 1.07997 * 120.40667 * 0.05250 * 6 5 3 32 32 H 1.08006 * 120.80267 * 180.02562 * 7 6 5 33 33 H 1.08000 * 119.41362 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.90398 * 180.02562 * 11 10 9 35 35 H 0.97000 * 119.99972 * 179.97438 * 19 18 16 36 36 H 1.08005 * 120.13965 * 0.02562 * 24 9 8 37 37 H 1.07994 * 119.64019 * 179.72357 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5314 2.2197 0.0005 5 6 3.6195 1.1670 0.0006 6 6 4.3081 2.3796 0.0000 7 6 5.6910 2.3698 0.0000 8 6 6.3468 1.1352 0.0000 9 6 7.8278 1.0714 -0.0005 10 6 8.5691 2.2573 -0.0016 11 6 9.9460 2.2370 -0.0017 12 6 10.6302 1.0204 -0.0016 13 6 12.0619 0.9929 -0.0022 14 7 13.1976 0.9711 -0.0032 15 6 9.8634 -0.2283 -0.0010 16 6 10.5224 -1.4730 -0.0004 17 1 11.5096 -1.5615 -0.4294 18 6 9.8991 -2.5962 0.5625 19 7 10.3364 -3.7951 0.2821 20 14 8.4437 -2.3782 1.7130 21 1 7.1804 -2.5070 0.9430 22 1 8.4877 -3.4204 2.7697 23 1 8.5059 -1.0338 2.3407 24 6 8.4588 -0.1632 -0.0070 25 6 5.5876 -0.0379 -0.0058 26 7 4.2751 0.0122 0.0001 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.9499 -0.8401 0.0004 31 1 3.7680 3.3149 0.0000 32 1 6.2507 3.2935 0.0000 33 1 8.0526 3.2057 -0.0016 34 1 10.4982 3.1651 -0.0021 35 1 9.9056 -4.5719 0.6717 36 1 7.8740 -1.0712 -0.0119 37 1 6.0854 -0.9962 -0.0104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239852115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:53:45 Heat of formation + Delta-G solvation = 41.919874 kcal Electronic energy + Delta-G solvation = -23105.962407 eV Core-core repulsion = 19619.710613 eV Total energy + Delta-G solvation = -3486.251794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.106 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63842 -39.16977 -37.92806 -35.41889 -34.82348 -34.31430 -32.92687 -32.03599 -30.91106 -29.41406 -27.09888 -26.03841 -24.30503 -23.78821 -21.58315 -21.33776 -20.61297 -18.61836 -17.96224 -17.70319 -16.66434 -16.16773 -15.52504 -15.50225 -15.10562 -15.05349 -14.28944 -14.04201 -13.95010 -13.70155 -13.38805 -13.09124 -12.96723 -12.85419 -12.80369 -12.50037 -12.20095 -11.92264 -11.82439 -11.65573 -11.30771 -11.17017 -10.80146 -10.44395 -10.27631 -10.08591 -9.92111 -9.60308 -9.46128 -9.40042 -9.21166 -8.13681 -7.61406 -7.43904 -4.98074 0.38247 1.25631 1.82012 2.31283 2.70200 2.79346 2.93610 3.01525 3.02204 3.57342 3.70359 3.72377 4.10382 4.10900 4.27505 4.74330 4.83997 4.92323 4.97757 5.03301 5.07814 5.17705 5.26292 5.32703 5.52535 5.54830 5.75713 5.91111 6.01349 6.06607 6.16883 6.20068 6.38597 6.60023 6.70008 6.78234 7.09007 7.17975 7.25507 7.35421 7.54789 7.74435 7.82754 8.06205 8.09479 8.22985 8.61084 9.54646 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.017462 B = 0.003921 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.111624 B = 7139.274488 C = 8556.214886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.720 5.720 3 C 0.576 3.424 4 O -0.539 6.539 5 C 0.051 3.949 6 C -0.105 4.105 7 C -0.081 4.081 8 C -0.046 4.046 9 C 0.003 3.997 10 C -0.239 4.239 11 C -0.013 4.013 12 C -0.162 4.162 13 C 0.294 3.706 14 N -0.493 5.493 15 C 0.122 3.878 16 C -0.406 4.406 17 H 0.100 0.900 18 C 0.080 3.920 19 N -0.768 5.768 20 Si 0.907 3.093 21 H -0.260 1.260 22 H -0.282 1.282 23 H -0.233 1.233 24 C -0.211 4.211 25 C 0.096 3.904 26 N -0.457 5.457 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.414 0.586 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.296 0.704 36 H 0.112 0.888 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.845 3.978 0.848 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.371 5.371 3 C 0.362 3.638 4 O -0.416 6.416 5 C -0.087 4.087 6 C -0.126 4.126 7 C -0.106 4.106 8 C -0.048 4.048 9 C 0.002 3.998 10 C -0.258 4.258 11 C -0.034 4.034 12 C -0.167 4.167 13 C -0.017 4.017 14 N -0.171 5.171 15 C 0.116 3.884 16 C -0.432 4.432 17 H 0.118 0.882 18 C -0.145 4.145 19 N -0.388 5.388 20 Si 0.732 3.268 21 H -0.186 1.186 22 H -0.208 1.208 23 H -0.156 1.156 24 C -0.230 4.230 25 C -0.064 4.064 26 N -0.167 5.167 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.249 0.751 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.024 3.608 0.847 15.474 hybrid contribution -0.237 0.055 0.397 0.466 sum -15.261 3.663 1.244 15.743 Atomic orbital electron populations 1.21575 0.79387 1.02386 1.02345 1.45640 1.07623 1.09290 1.74557 1.17927 0.86014 0.83841 0.76007 1.90765 1.69123 1.31347 1.50342 1.20953 0.93652 0.90081 1.03986 1.21992 0.94434 0.99009 0.97134 1.21771 0.93505 0.98531 0.96779 1.20363 0.94990 0.93798 0.95666 1.18225 0.88638 0.94217 0.98755 1.20125 0.93052 0.95812 1.16859 1.20503 0.93666 0.95137 0.94110 1.16886 0.83472 0.93826 1.22542 1.25659 0.92614 0.91724 0.91695 1.81054 1.12677 1.09425 1.13950 1.18327 0.90412 0.91203 0.88432 1.19739 1.04086 0.90326 1.29015 0.88238 1.26425 0.98069 0.94117 0.95874 1.69573 1.36924 0.99740 1.32592 0.86399 0.79576 0.80932 0.79896 1.18568 1.20837 1.15615 1.21020 0.94089 0.95464 1.12386 1.23107 0.88292 0.98931 0.96088 1.67436 1.10610 1.28256 1.10441 0.90472 0.92126 0.92105 0.75061 0.83616 0.83411 0.87431 0.87333 0.89257 0.87054 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.70 59.84 0.64 1.34 16 2 N -0.72 -7.74 5.70 -67.98 -0.39 -8.13 16 3 C 0.58 7.94 7.81 -12.23 -0.10 7.84 16 4 O -0.54 -8.60 16.31 5.34 0.09 -8.51 16 5 C 0.05 0.72 6.75 -82.97 -0.56 0.16 16 6 C -0.10 -1.37 9.62 -39.11 -0.38 -1.75 16 7 C -0.08 -1.06 9.51 -38.98 -0.37 -1.43 16 8 C -0.05 -0.71 5.90 -104.65 -0.62 -1.33 16 9 C 0.00 0.06 5.86 -105.03 -0.62 -0.56 16 10 C -0.24 -3.90 9.38 -39.17 -0.37 -4.26 16 11 C -0.01 -0.23 9.74 -39.28 -0.38 -0.61 16 12 C -0.16 -3.32 5.95 -104.13 -0.62 -3.94 16 13 C 0.29 6.42 14.31 -22.48 -0.32 6.10 16 14 N -0.49 -11.32 18.54 41.83 0.78 -10.54 16 15 C 0.12 2.65 5.33 -104.68 -0.56 2.09 16 16 C -0.41 -9.63 9.08 -37.85 -0.34 -9.97 16 17 H 0.10 2.60 7.59 -52.48 -0.40 2.20 16 18 C 0.08 1.81 5.44 -17.30 -0.09 1.72 16 19 N -0.77 -17.87 13.92 55.56 0.77 -17.10 16 20 Si 0.91 17.35 24.41 -169.99 -4.15 13.20 16 21 H -0.26 -4.50 5.76 56.52 0.33 -4.18 16 22 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.23 -4.56 6.73 56.52 0.38 -4.18 16 24 C -0.21 -4.12 6.47 -38.53 -0.25 -4.37 16 25 C 0.10 1.48 10.58 -17.20 -0.18 1.30 16 26 N -0.46 -6.67 9.52 -9.52 -0.09 -6.76 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.41 3.98 8.15 -40.82 -0.33 3.65 16 31 H 0.15 1.70 7.63 -52.49 -0.40 1.30 16 32 H 0.15 1.59 6.24 -52.48 -0.33 1.26 16 33 H 0.11 1.43 6.15 -52.49 -0.32 1.11 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.30 6.12 8.29 -40.82 -0.34 5.78 16 36 H 0.11 2.11 2.63 -52.48 -0.14 1.97 16 37 H 0.17 2.54 5.18 -52.49 -0.27 2.27 16 LS Contribution 324.75 15.07 4.89 4.89 Total: -1.00 -26.70 324.75 -6.32 -33.02 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.11 Total: 7.60 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -5.11 Total: -7.68 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 1.07 Total: -42.53 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -4.15 Total: 13.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.70 -6.32 -33.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239852115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.941 kcal (2) G-P(sol) polarization free energy of solvation -26.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds