Wall clock time and date at job start Fri Apr 10 2020 21:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35589 * 117.00413 * 2 1 4 4 C 1.38528 * 120.07874 * 359.97438 * 3 2 1 5 5 C 1.38013 * 120.31121 * 180.02562 * 4 3 2 6 6 C 1.39957 * 120.46895 * 0.02562 * 5 4 3 7 7 C 1.48317 * 119.92346 * 180.02562 * 6 5 4 8 8 C 1.40515 * 120.25385 * 179.72447 * 7 6 5 9 9 N 1.30851 * 121.52949 * 179.70654 * 8 7 6 10 10 C 1.33726 * 121.74007 * 0.55051 * 9 8 7 11 11 N 1.33856 * 120.64133 * 179.69957 * 10 9 8 12 12 C 1.31339 * 119.85438 * 180.02562 * 11 10 9 13 13 C 1.39668 * 120.78936 * 0.02562 * 12 11 10 14 14 N 1.31368 * 120.56774 * 359.97438 * 13 12 11 15 15 C 1.33675 * 119.68892 * 0.02562 * 14 13 12 16 16 C 1.38641 * 120.25142 * 359.97438 * 7 6 5 17 17 C 1.38658 * 120.15376 * 359.74459 * 6 5 4 18 18 C 1.40505 * 119.68589 * 0.48813 * 17 6 5 19 19 C 1.41186 * 120.23240 * 179.78907 * 18 17 6 20 20 H 1.07999 * 120.00419 * 154.40634 * 19 18 17 21 21 C 1.39914 * 120.00001 * 334.68408 * 19 18 17 22 22 N 1.30877 * 119.99645 * 342.61863 * 21 19 18 23 23 Si 1.86799 * 120.00144 * 162.61731 * 21 19 18 24 24 H 1.48503 * 109.47030 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46838 * 120.00188 * 23 21 19 26 26 H 1.48497 * 109.46888 * 239.99795 * 23 21 19 27 27 H 1.09000 * 109.47116 * 300.00493 * 1 2 3 28 28 H 1.08999 * 109.46571 * 60.00077 * 1 2 3 29 29 H 1.09001 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.84660 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.76412 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.23390 * 359.97438 * 8 7 6 33 33 H 1.07994 * 119.61160 * 180.02562 * 12 11 10 34 34 H 1.08004 * 119.71480 * 179.97438 * 13 12 11 35 35 H 1.08000 * 120.98356 * 0.02562 * 16 7 6 36 36 H 1.08004 * 120.15539 * 180.27818 * 17 6 5 37 37 H 0.96998 * 119.99710 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2081 0.0000 4 6 1.2919 2.3709 -0.0005 5 6 1.9135 3.6031 -0.0011 6 6 3.3102 3.6934 -0.0016 7 6 3.9656 5.0239 -0.0016 8 6 5.3673 5.1226 0.0037 9 7 5.9715 6.2832 -0.0019 10 6 5.2877 7.4324 -0.0020 11 7 5.9285 8.6076 -0.0017 12 6 5.2414 9.7269 -0.0013 13 6 3.8448 9.7085 -0.0006 14 7 3.1917 8.5687 -0.0008 15 6 3.8701 7.4169 -0.0012 16 6 3.2000 6.1797 -0.0016 17 6 4.0826 2.5419 0.0037 18 6 3.4565 1.2840 -0.0007 19 6 4.2317 0.1041 0.0001 20 1 3.8218 -0.8111 0.4011 21 6 5.5332 0.1217 -0.5132 22 7 5.9170 1.1028 -1.2898 23 14 6.7229 -1.2549 -0.0900 24 1 6.0493 -2.2354 0.7988 25 1 7.1581 -1.9336 -1.3371 26 1 7.9071 -0.6894 0.6049 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2134 2.3131 -0.0005 31 1 1.3180 4.5041 -0.0011 32 1 5.9596 4.2195 0.0081 33 1 5.7624 10.6729 -0.0015 34 1 3.2972 10.6394 0.0002 35 1 2.1210 6.1318 -0.0012 36 1 5.1603 2.6115 0.0078 37 1 6.8194 1.1152 -1.6453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244044379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:14 Heat of formation + Delta-G solvation = 67.314856 kcal Electronic energy + Delta-G solvation = -23519.776044 eV Core-core repulsion = 20034.625459 eV Total energy + Delta-G solvation = -3485.150585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.106 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41326 -39.03549 -38.17247 -36.26960 -34.86143 -33.90177 -31.94355 -31.21563 -29.99670 -28.38245 -26.69958 -25.67315 -25.23124 -24.18431 -22.71892 -20.94361 -20.85680 -18.94463 -18.15408 -17.33298 -17.03481 -16.63848 -15.45591 -15.31815 -15.04715 -14.85819 -14.76093 -14.66650 -14.35483 -13.47614 -13.21748 -12.76615 -12.71226 -12.58994 -12.32294 -12.03558 -11.70566 -11.63045 -11.51926 -11.33577 -11.21447 -11.00886 -10.53898 -10.48858 -10.36136 -10.03079 -9.61127 -9.34316 -9.07788 -8.86993 -8.58804 -7.71554 -7.02666 -6.79397 -4.40504 0.17096 0.48342 1.93444 2.48726 2.62569 3.02204 3.06222 3.11825 3.24350 3.70578 3.88778 4.06166 4.19129 4.22947 4.32909 4.53344 4.76398 4.86801 5.03491 5.19659 5.22744 5.39830 5.53590 5.64041 5.70954 5.80431 5.87098 5.99425 6.01308 6.12051 6.25105 6.55330 6.69662 6.93409 7.03990 7.11585 7.14901 7.42390 7.47102 7.59398 7.70768 7.93967 8.14119 8.18562 8.51356 8.67130 8.85882 10.07943 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.015185 B = 0.004167 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.456615 B = 6718.650711 C = 8474.475085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C 0.033 3.967 4 C -0.180 4.180 5 C -0.183 4.183 6 C -0.079 4.079 7 C -0.031 4.031 8 C 0.178 3.822 9 N -0.460 5.460 10 C 0.239 3.761 11 N -0.414 5.414 12 C 0.083 3.917 13 C 0.065 3.935 14 N -0.419 5.419 15 C 0.040 3.960 16 C -0.063 4.063 17 C -0.119 4.119 18 C 0.094 3.906 19 C -0.442 4.442 20 H 0.086 0.914 21 C 0.074 3.926 22 N -0.796 5.796 23 Si 0.909 3.091 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.271 1.271 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.182 0.818 33 H 0.175 0.825 34 H 0.174 0.826 35 H 0.151 0.849 36 H 0.133 0.867 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 9.083 1.841 10.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.223 6.223 3 C -0.012 4.012 4 C -0.199 4.199 5 C -0.203 4.203 6 C -0.080 4.080 7 C -0.035 4.035 8 C 0.001 3.999 9 N -0.168 5.168 10 C 0.000 4.000 11 N -0.129 5.129 12 C -0.096 4.096 13 C -0.111 4.111 14 N -0.134 5.134 15 C -0.086 4.086 16 C -0.089 4.089 17 C -0.139 4.139 18 C 0.091 3.909 19 C -0.471 4.471 20 H 0.104 0.896 21 C -0.143 4.143 22 N -0.422 5.422 23 Si 0.734 3.266 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.196 1.196 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.198 0.802 33 H 0.192 0.808 34 H 0.191 0.809 35 H 0.168 0.832 36 H 0.151 0.849 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.863 8.890 1.691 9.492 hybrid contribution -0.698 -0.264 -0.019 0.746 sum -3.561 8.626 1.672 9.481 Atomic orbital electron populations 1.22787 0.81382 1.02040 1.00109 1.85972 1.18523 1.28113 1.89663 1.19418 0.92437 0.82755 1.06595 1.20563 0.97756 0.92558 1.08992 1.20162 0.92723 0.95739 1.11646 1.18166 0.93067 0.89619 1.07163 1.20247 0.93923 0.94440 0.94892 1.23648 0.92125 0.95084 0.89038 1.67514 1.39514 0.96777 1.13000 1.20002 0.87961 0.92162 0.99902 1.68183 1.39308 0.97204 1.08219 1.24027 0.92809 0.97218 0.95579 1.24036 0.93442 0.97297 0.96354 1.68593 1.39074 0.97750 1.07943 1.20215 0.92546 0.93874 1.01988 1.21544 1.01160 0.88474 0.97748 1.21226 0.99482 0.89612 1.03589 1.16941 0.87319 0.93853 0.92811 1.19471 0.96715 0.96692 1.34226 0.89630 1.25902 0.98825 0.97074 0.92548 1.69792 1.19411 1.30876 1.22152 0.86226 0.79898 0.81150 0.79365 1.18315 1.19946 1.19559 0.94018 0.93930 0.89806 0.87983 0.88428 0.80157 0.80754 0.80861 0.83175 0.84927 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.81 101.05 0.99 1.50 16 2 O -0.31 -6.64 9.77 -18.46 -0.18 -6.82 16 3 C 0.03 0.76 6.72 -38.28 -0.26 0.50 16 4 C -0.18 -3.68 9.01 -39.56 -0.36 -4.04 16 5 C -0.18 -3.68 9.42 -39.02 -0.37 -4.05 16 6 C -0.08 -1.66 5.87 -104.95 -0.62 -2.28 16 7 C -0.03 -0.59 5.89 -104.74 -0.62 -1.20 16 8 C 0.18 3.36 10.57 -17.11 -0.18 3.18 16 9 N -0.46 -8.96 10.40 -12.29 -0.13 -9.09 16 10 C 0.24 4.43 7.60 -157.64 -1.20 3.23 16 11 N -0.41 -6.82 10.55 -12.41 -0.13 -6.95 16 12 C 0.08 0.95 11.21 -17.23 -0.19 0.75 16 13 C 0.07 0.72 11.22 -17.22 -0.19 0.53 16 14 N -0.42 -6.33 10.46 -10.78 -0.11 -6.45 16 15 C 0.04 0.70 6.59 -84.78 -0.56 0.14 16 16 C -0.06 -1.10 9.50 -38.50 -0.37 -1.47 16 17 C -0.12 -2.78 8.06 -38.57 -0.31 -3.09 16 18 C 0.09 2.32 5.57 -106.73 -0.59 1.72 16 19 C -0.44 -11.11 8.71 -37.84 -0.33 -11.44 16 20 H 0.09 2.16 7.65 -52.49 -0.40 1.75 16 21 C 0.07 1.74 5.14 -17.33 -0.09 1.65 16 22 N -0.80 -19.08 10.98 55.55 0.61 -18.47 16 23 Si 0.91 17.92 29.59 -169.99 -5.03 12.89 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 27 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 28 H 0.04 0.62 7.65 -51.93 -0.40 0.22 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.80 6.27 -52.49 -0.33 1.47 16 31 H 0.10 1.71 6.21 -52.48 -0.33 1.39 16 32 H 0.18 3.30 6.16 -52.48 -0.32 2.97 16 33 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.15 2.40 6.26 -52.49 -0.33 2.08 16 36 H 0.13 3.07 4.31 -52.48 -0.23 2.85 16 37 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 LS Contribution 318.68 15.07 4.80 4.80 Total: -1.00 -29.58 318.68 -8.54 -38.11 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -3.13 Total: 6.31 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -5.24 Total: -14.34 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.24 Total: -40.95 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.18 Total: -6.82 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.58 -8.54 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244044379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.429 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds