Wall clock time and date at job start Fri Apr 10 2020 21:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34571 * 119.77424 * 2 1 4 4 O 1.21292 * 119.61982 * 0.84098 * 3 2 1 5 5 C 1.50492 * 120.74288 * 180.86132 * 3 2 1 6 6 C 1.52909 * 109.91186 * 324.77146 * 5 3 2 7 7 C 1.50658 * 109.52194 * 48.60392 * 6 5 3 8 8 C 1.38116 * 120.17523 * 146.10234 * 7 6 5 9 9 C 1.38273 * 120.05054 * 179.97438 * 8 7 6 10 10 C 1.50702 * 119.92125 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47526 * 89.99668 * 10 9 8 12 12 C 1.52996 * 109.47216 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46865 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00545 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99917 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00034 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00031 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47098 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.46866 * 120.00410 * 17 15 13 20 20 H 1.48498 * 109.46784 * 240.00154 * 17 15 13 21 21 C 1.38300 * 120.15840 * 0.02562 * 9 8 7 22 22 C 1.38206 * 120.07355 * 0.02562 * 21 9 8 23 23 Cl 1.73597 * 120.06134 * 179.97438 * 22 21 9 24 24 C 1.38811 * 119.84234 * 326.07906 * 7 6 5 25 25 H 1.09001 * 109.46479 * 215.54144 * 1 2 3 26 26 H 1.09004 * 109.46967 * 335.53908 * 1 2 3 27 27 H 1.08994 * 109.47017 * 95.54002 * 1 2 3 28 28 H 1.08998 * 109.37529 * 204.65056 * 5 3 2 29 29 H 1.08999 * 109.41822 * 84.91928 * 5 3 2 30 30 H 1.09000 * 109.45916 * 288.58960 * 6 5 3 31 31 H 1.09008 * 109.46134 * 168.61303 * 6 5 3 32 32 H 1.08006 * 119.97342 * 359.97087 * 8 7 6 33 33 H 1.08996 * 109.47289 * 210.00398 * 10 9 8 34 34 H 1.09006 * 109.46875 * 329.99428 * 10 9 8 35 35 H 1.09005 * 109.46910 * 300.00338 * 11 10 9 36 36 H 1.09000 * 109.46557 * 60.00000 * 11 10 9 37 37 H 1.09005 * 109.47358 * 299.99943 * 12 11 10 38 38 H 1.09000 * 109.47456 * 60.00430 * 12 11 10 39 39 H 0.96999 * 120.00123 * 180.02562 * 16 15 13 40 40 H 1.07999 * 119.96273 * 180.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1333 1.1681 0.0000 4 8 1.5159 2.2120 0.0155 5 6 3.6379 1.1936 -0.0194 6 6 4.1892 0.0220 0.7940 7 6 3.4939 -1.2491 0.3810 8 6 4.1802 -2.4476 0.3816 9 6 3.5394 -3.6127 0.0025 10 6 4.2910 -4.9190 0.0049 11 6 4.1478 -5.5874 1.3736 12 6 4.9113 -6.9132 1.3762 13 6 4.7697 -7.5718 2.7242 14 1 4.1925 -7.0930 3.5013 15 6 5.3762 -8.7864 2.9652 16 7 6.0787 -9.3698 2.0188 17 14 5.2013 -9.6025 4.6364 18 1 4.3675 -8.7481 5.5196 19 1 4.5520 -10.9281 4.4743 20 1 6.5448 -9.7802 5.2435 21 6 2.2104 -3.5822 -0.3788 22 6 1.5182 -2.3860 -0.3826 23 17 -0.1498 -2.3480 -0.8619 24 6 2.1597 -1.2139 -0.0006 25 1 -0.3632 -0.8362 0.5974 26 1 -0.3633 0.9355 0.4255 27 1 -0.3633 -0.0992 -1.0228 28 1 3.9893 2.1309 0.4119 29 1 3.9884 1.1163 -1.0487 30 1 4.0154 0.2029 1.8548 31 1 5.2597 -0.0742 0.6126 32 1 5.2184 -2.4747 0.6784 33 1 3.8826 -5.5745 -0.7642 34 1 5.3452 -4.7319 -0.1996 35 1 4.5563 -4.9317 2.1427 36 1 3.0936 -5.7744 1.5780 37 1 4.5032 -7.5690 0.6071 38 1 5.9655 -6.7258 1.1719 39 1 6.5051 -10.2244 2.1882 40 1 1.7128 -4.4942 -0.6739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:29 Heat of formation + Delta-G solvation = -28.731961 kcal Electronic energy + Delta-G solvation = -22278.025439 eV Core-core repulsion = 18889.817445 eV Total energy + Delta-G solvation = -3388.207994 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.40155 -39.16408 -37.02275 -36.29247 -34.77999 -34.06160 -32.32848 -30.39984 -29.84896 -27.76512 -26.65355 -24.73890 -23.85631 -22.22703 -21.75071 -20.18580 -19.07425 -17.82520 -17.08459 -16.66587 -16.30576 -15.58789 -15.26478 -14.98862 -14.52098 -14.49646 -14.11283 -14.02320 -13.80963 -13.52694 -13.10095 -12.84684 -12.73692 -12.32676 -12.25908 -12.11638 -11.73193 -11.48505 -11.40747 -11.14953 -10.84675 -10.80741 -10.52057 -10.31351 -10.19223 -10.02594 -9.73991 -9.35097 -9.08806 -8.86619 -8.37547 -7.94114 -6.02539 -4.04767 0.91132 0.99602 1.87159 2.28321 2.49619 3.29231 3.37051 3.40984 3.44820 4.01114 4.28202 4.43084 4.45714 4.70578 4.72608 4.87151 4.99879 5.15080 5.18428 5.21533 5.32914 5.33943 5.42820 5.44025 5.55858 5.62505 5.75956 5.80673 5.92844 6.00984 6.22300 6.26387 6.37272 6.61468 6.74956 6.82021 6.97111 7.07993 7.64462 7.65013 7.78433 7.97587 8.40300 9.02750 9.59673 11.08717 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.021253 B = 0.002935 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.145279 B = 9537.355844 C =10134.587131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.549 5.549 3 C 0.518 3.482 4 O -0.529 6.529 5 C -0.137 4.137 6 C -0.075 4.075 7 C -0.111 4.111 8 C -0.077 4.077 9 C -0.068 4.068 10 C -0.083 4.083 11 C -0.104 4.104 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.081 4.081 22 C -0.062 4.062 23 Cl -0.067 7.067 24 C 0.154 3.846 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.138 0.862 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 19.021 -6.724 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.273 5.273 3 C 0.308 3.692 4 O -0.406 6.406 5 C -0.177 4.177 6 C -0.112 4.112 7 C -0.113 4.113 8 C -0.095 4.095 9 C -0.069 4.069 10 C -0.121 4.121 11 C -0.141 4.141 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.100 4.100 22 C -0.091 4.091 23 Cl -0.038 7.038 24 C 0.059 3.941 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.156 0.844 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.189 19.539 -6.792 21.900 hybrid contribution -0.347 -0.715 0.822 1.144 sum -7.536 18.824 -5.970 21.137 Atomic orbital electron populations 1.22546 0.77743 1.04131 1.03283 1.45341 1.07653 1.04391 1.69906 1.20792 0.90943 0.82452 0.74982 1.90724 1.70157 1.31218 1.48459 1.21712 0.90664 1.01439 1.03857 1.20431 1.00652 0.89752 1.00381 1.19420 0.91761 0.96480 1.03680 1.20932 1.00451 0.90329 0.97826 1.20147 0.93302 0.96388 0.97047 1.20816 0.99258 0.91385 1.00593 1.21650 1.00818 0.98755 0.92914 1.19123 0.95182 0.90328 0.97052 1.21297 1.31556 1.04528 0.98450 0.92677 1.25023 0.95308 0.97318 0.96817 1.69967 1.33791 1.17092 1.32663 0.86566 0.77830 0.79402 0.84399 1.19735 1.21022 1.21012 1.20902 0.93961 0.95997 0.99099 1.20485 0.86379 0.94199 1.08059 1.98341 1.16614 1.98392 1.90425 1.17275 0.91587 0.84429 1.00787 0.89498 0.90332 0.91234 0.87238 0.87813 0.89634 0.88541 0.84428 0.90997 0.90877 0.93193 0.93225 0.96553 0.96538 0.93060 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 8.42 59.85 0.50 1.18 16 2 N -0.55 -6.42 3.09 -120.97 -0.37 -6.79 16 3 C 0.52 6.10 7.46 -11.18 -0.08 6.02 16 4 O -0.53 -7.78 16.51 5.55 0.09 -7.69 16 5 C -0.14 -1.10 6.07 -28.03 -0.17 -1.27 16 6 C -0.08 -0.58 6.00 -27.95 -0.17 -0.75 16 7 C -0.11 -1.17 5.66 -104.48 -0.59 -1.76 16 8 C -0.08 -0.86 9.34 -39.61 -0.37 -1.23 16 9 C -0.07 -0.87 5.14 -104.59 -0.54 -1.40 16 10 C -0.08 -1.23 5.34 -27.88 -0.15 -1.38 16 11 C -0.10 -1.96 5.13 -26.73 -0.14 -2.10 16 12 C 0.02 0.49 4.97 -27.89 -0.14 0.36 16 13 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.08 -1.00 9.48 -39.57 -0.37 -1.37 16 22 C -0.06 -0.74 6.22 -39.32 -0.24 -0.99 16 23 Cl -0.07 -0.71 23.23 -51.86 -1.20 -1.92 16 24 C 0.15 1.81 6.32 -83.71 -0.53 1.28 16 25 H 0.09 0.87 6.01 -51.93 -0.31 0.56 16 26 H 0.08 0.84 7.21 -51.93 -0.37 0.47 16 27 H 0.07 0.70 6.80 -51.93 -0.35 0.34 16 28 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.55 8.06 -51.92 -0.42 0.13 16 32 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -31.57 340.51 -9.68 -41.26 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -5.64 Total: -4.00 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -3.40 Total: -16.60 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.36 Total: -32.47 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.69 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.20 Total: -1.92 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.57 -9.68 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.523 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds