Wall clock time and date at job start Fri Apr 10 2020 21:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34571 * 119.77424 * 2 1 4 4 O 1.21292 * 119.61982 * 0.84098 * 3 2 1 5 5 C 1.50492 * 120.74288 * 180.86132 * 3 2 1 6 6 C 1.52909 * 109.91186 * 324.77146 * 5 3 2 7 7 C 1.50658 * 109.52194 * 48.60392 * 6 5 3 8 8 C 1.38116 * 120.17523 * 146.10234 * 7 6 5 9 9 C 1.38273 * 120.05054 * 179.97438 * 8 7 6 10 10 C 1.50702 * 119.92125 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47526 * 89.99668 * 10 9 8 12 12 C 1.52996 * 109.47216 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46865 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00545 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99917 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00034 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00031 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47098 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.46866 * 120.00410 * 17 15 13 20 20 H 1.48498 * 109.46784 * 240.00154 * 17 15 13 21 21 C 1.38300 * 120.15840 * 0.02562 * 9 8 7 22 22 C 1.38206 * 120.07355 * 0.02562 * 21 9 8 23 23 Cl 1.73597 * 120.06134 * 179.97438 * 22 21 9 24 24 C 1.38811 * 119.84234 * 326.07906 * 7 6 5 25 25 H 1.09001 * 109.46479 * 215.54144 * 1 2 3 26 26 H 1.09004 * 109.46967 * 335.53908 * 1 2 3 27 27 H 1.08994 * 109.47017 * 95.54002 * 1 2 3 28 28 H 1.08998 * 109.37529 * 204.65056 * 5 3 2 29 29 H 1.08999 * 109.41822 * 84.91928 * 5 3 2 30 30 H 1.09000 * 109.45916 * 288.58960 * 6 5 3 31 31 H 1.09008 * 109.46134 * 168.61303 * 6 5 3 32 32 H 1.08006 * 119.97342 * 359.97087 * 8 7 6 33 33 H 1.08996 * 109.47289 * 210.00398 * 10 9 8 34 34 H 1.09006 * 109.46875 * 329.99428 * 10 9 8 35 35 H 1.09005 * 109.46910 * 300.00338 * 11 10 9 36 36 H 1.09000 * 109.46557 * 60.00000 * 11 10 9 37 37 H 1.09005 * 109.47358 * 299.99943 * 12 11 10 38 38 H 1.09000 * 109.47456 * 60.00430 * 12 11 10 39 39 H 0.96999 * 120.00123 * 180.02562 * 16 15 13 40 40 H 1.07999 * 119.96273 * 180.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1333 1.1681 0.0000 4 8 1.5159 2.2120 0.0155 5 6 3.6379 1.1936 -0.0194 6 6 4.1892 0.0220 0.7940 7 6 3.4939 -1.2491 0.3810 8 6 4.1802 -2.4476 0.3816 9 6 3.5394 -3.6127 0.0025 10 6 4.2910 -4.9190 0.0049 11 6 4.1478 -5.5874 1.3736 12 6 4.9113 -6.9132 1.3762 13 6 4.7697 -7.5718 2.7242 14 1 4.1925 -7.0930 3.5013 15 6 5.3762 -8.7864 2.9652 16 7 6.0787 -9.3698 2.0188 17 14 5.2013 -9.6025 4.6364 18 1 4.3675 -8.7481 5.5196 19 1 4.5520 -10.9281 4.4743 20 1 6.5448 -9.7802 5.2435 21 6 2.2104 -3.5822 -0.3788 22 6 1.5182 -2.3860 -0.3826 23 17 -0.1498 -2.3480 -0.8619 24 6 2.1597 -1.2139 -0.0006 25 1 -0.3632 -0.8362 0.5974 26 1 -0.3633 0.9355 0.4255 27 1 -0.3633 -0.0992 -1.0228 28 1 3.9893 2.1309 0.4119 29 1 3.9884 1.1163 -1.0487 30 1 4.0154 0.2029 1.8548 31 1 5.2597 -0.0742 0.6126 32 1 5.2184 -2.4747 0.6784 33 1 3.8826 -5.5745 -0.7642 34 1 5.3452 -4.7319 -0.1996 35 1 4.5563 -4.9317 2.1427 36 1 3.0936 -5.7744 1.5780 37 1 4.5032 -7.5690 0.6071 38 1 5.9655 -6.7258 1.1719 39 1 6.5051 -10.2244 2.1882 40 1 1.7128 -4.4942 -0.6739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:29 Heat of formation + Delta-G solvation = -44.658580 kcal Electronic energy + Delta-G solvation = -22278.716069 eV Core-core repulsion = 18889.817445 eV Total energy + Delta-G solvation = -3388.898624 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.26673 -40.10715 -37.92925 -37.32115 -35.99671 -35.26086 -34.02376 -31.44430 -31.01818 -28.74324 -28.05840 -25.56232 -25.37694 -23.10655 -22.97263 -21.74980 -19.94973 -18.69706 -18.39326 -17.97154 -17.47541 -16.62818 -16.40888 -16.26465 -15.86071 -15.35191 -15.16124 -14.97977 -14.95794 -14.41038 -14.39821 -14.12900 -13.74732 -13.52701 -13.35040 -13.14153 -12.96280 -12.72312 -12.63083 -12.55241 -12.35267 -12.24181 -11.98444 -11.38809 -11.33595 -11.26244 -11.18735 -11.01590 -10.76949 -10.51949 -9.72154 -8.89095 -8.17023 -6.27110 -0.01426 0.12289 0.98539 1.39863 1.41099 1.42257 1.54664 1.65529 2.42843 2.54389 3.16357 3.24173 3.51210 3.68363 3.90510 3.97411 4.08947 4.21336 4.26232 4.31746 4.37172 4.39300 4.60575 4.68407 4.71529 4.76150 4.82460 4.86040 4.91162 5.01099 5.08661 5.13102 5.30755 5.32635 5.40841 5.58647 5.58847 5.69510 5.85233 5.92762 6.10665 6.30653 6.76755 6.91002 7.42040 8.94456 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.021253 B = 0.002935 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.145279 B = 9537.355844 C =10134.587131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.554 5.554 3 C 0.511 3.489 4 O -0.566 6.566 5 C -0.131 4.131 6 C -0.072 4.072 7 C -0.106 4.106 8 C -0.073 4.073 9 C -0.079 4.079 10 C -0.072 4.072 11 C -0.090 4.090 12 C 0.022 3.978 13 C -0.541 4.541 14 H 0.057 0.943 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.959 3.041 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.278 1.278 21 C -0.088 4.088 22 C -0.070 4.070 23 Cl -0.061 7.061 24 C 0.147 3.853 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.158 0.842 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.045 0.955 37 H -0.008 1.008 38 H -0.003 1.003 39 H 0.263 0.737 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 20.121 -5.955 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.277 5.277 3 C 0.303 3.697 4 O -0.445 6.445 5 C -0.170 4.170 6 C -0.109 4.109 7 C -0.108 4.108 8 C -0.091 4.091 9 C -0.080 4.080 10 C -0.109 4.109 11 C -0.128 4.128 12 C -0.015 4.015 13 C -0.579 4.579 14 H 0.075 0.925 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.784 3.216 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.203 1.203 21 C -0.107 4.107 22 C -0.100 4.100 23 Cl -0.032 7.032 24 C 0.052 3.948 25 H 0.109 0.891 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.175 0.825 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.010 0.990 38 H 0.015 0.985 39 H 0.072 0.928 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.645 20.637 -6.024 22.502 hybrid contribution -0.558 -1.045 0.548 1.305 sum -7.203 19.592 -5.477 21.580 Atomic orbital electron populations 1.22564 0.77720 1.03985 1.03521 1.45477 1.07989 1.04600 1.69587 1.21558 0.92528 0.81757 0.73877 1.90706 1.71225 1.32305 1.50226 1.21787 0.87617 1.02500 1.05101 1.20543 1.01970 0.87875 1.00469 1.19723 0.91213 0.97518 1.02394 1.21134 1.01320 0.89799 0.96889 1.19943 0.93387 0.95933 0.98745 1.20586 1.00214 0.92285 0.97827 1.21413 0.99422 0.96165 0.95776 1.19046 0.94627 0.92727 0.95085 1.21765 1.31356 1.05050 0.99720 0.92486 1.25923 0.94965 0.98108 1.00746 1.70086 1.34751 1.17623 1.34838 0.85485 0.78070 0.78311 0.79717 1.18741 1.20584 1.20349 1.20935 0.94058 0.96290 0.99414 1.20550 0.86820 0.94259 1.08325 1.98340 1.16110 1.98376 1.90372 1.17493 0.92246 0.84236 1.00873 0.89148 0.90820 0.90915 0.85481 0.86263 0.89092 0.85571 0.82463 0.91215 0.90094 0.92811 0.93648 0.98959 0.98461 0.92847 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.31 8.42 127.77 1.08 2.39 16 2 N -0.55 -12.27 3.09 -655.13 -2.03 -14.29 16 3 C 0.51 11.27 7.46 87.62 0.65 11.93 16 4 O -0.57 -16.26 16.51 -3.07 -0.05 -16.31 16 5 C -0.13 -1.71 6.07 29.75 0.18 -1.53 16 6 C -0.07 -0.85 6.00 29.80 0.18 -0.67 16 7 C -0.11 -1.94 5.66 -19.77 -0.11 -2.05 16 8 C -0.07 -1.44 9.34 22.25 0.21 -1.23 16 9 C -0.08 -1.90 5.14 -19.84 -0.10 -2.00 16 10 C -0.07 -2.07 5.34 29.85 0.16 -1.91 16 11 C -0.09 -3.38 5.13 30.59 0.16 -3.23 16 12 C 0.02 1.11 4.97 29.85 0.15 1.26 16 13 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 14 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 15 C 0.00 0.01 5.46 84.66 0.46 0.47 16 16 N -0.93 -55.69 13.29 21.45 0.28 -55.40 16 17 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 18 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 C -0.09 -2.10 9.48 22.28 0.21 -1.89 16 22 C -0.07 -1.61 6.22 22.44 0.14 -1.47 16 23 Cl -0.06 -1.27 23.23 -2.72 -0.06 -1.33 16 24 C 0.15 3.20 6.32 38.17 0.24 3.44 16 25 H 0.09 1.77 6.01 -2.39 -0.01 1.76 16 26 H 0.07 1.59 7.21 -2.39 -0.02 1.57 16 27 H 0.07 1.43 6.80 -2.39 -0.02 1.42 16 28 H 0.13 1.26 8.14 -2.39 -0.02 1.25 16 29 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.13 0.83 8.06 -2.38 -0.02 0.81 16 32 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 34 H 0.08 2.19 8.08 -2.38 -0.02 2.17 16 35 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 38 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -68.32 340.51 5.05 -63.28 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.04 Total: 4.77 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 3.83 Total: -26.33 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -1.74 Total: -69.70 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.05 Total: -16.31 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.06 Total: -1.33 kcal Total: -68.32 5.05 -63.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.617 kcal (2) G-P(sol) polarization free energy of solvation -68.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds