Wall clock time and date at job start Fri Apr 10 2020 21:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81394 * 102.99867 * 2 1 4 4 H 1.09002 * 110.67484 * 56.78065 * 3 2 1 5 5 C 1.54886 * 110.75848 * 293.54131 * 3 2 1 6 6 C 1.54262 * 104.19995 * 203.74440 * 5 3 2 7 7 C 1.53867 * 106.59909 * 23.61151 * 6 5 3 8 8 H 1.09000 * 110.03401 * 119.32976 * 7 6 5 9 9 N 1.46502 * 110.03357 * 240.71641 * 7 6 5 10 10 C 1.46499 * 120.00062 * 58.54620 * 9 7 6 11 11 S 1.65606 * 119.99935 * 238.54122 * 9 7 6 12 12 O 1.42104 * 104.27561 * 26.07637 * 11 9 7 13 13 O 1.42095 * 104.27253 * 153.92818 * 11 9 7 14 14 C 1.81392 * 104.45119 * 270.00294 * 11 9 7 15 15 C 1.53003 * 109.46872 * 180.02562 * 14 11 9 16 16 C 1.50706 * 109.46666 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00232 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99469 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00270 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99863 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47028 * 90.00181 * 20 18 16 22 22 H 1.48501 * 109.47640 * 210.00110 * 20 18 16 23 23 H 1.48496 * 109.47259 * 330.00180 * 20 18 16 24 24 C 1.54268 * 106.60007 * 359.97438 * 7 6 5 25 25 H 1.09008 * 109.47118 * 59.99904 * 1 2 3 26 26 H 1.09003 * 109.47398 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47266 * 300.00562 * 1 2 3 28 28 H 1.09010 * 110.48640 * 85.06865 * 5 3 2 29 29 H 1.08996 * 110.48864 * 322.42928 * 5 3 2 30 30 H 1.09005 * 110.03583 * 264.32429 * 6 5 3 31 31 H 1.09005 * 110.03403 * 142.89805 * 6 5 3 32 32 H 1.09002 * 109.47391 * 89.99876 * 10 9 7 33 33 H 1.09001 * 109.46813 * 329.99933 * 10 9 7 34 34 H 1.09004 * 109.47041 * 210.00060 * 10 9 7 35 35 H 1.08998 * 109.47145 * 299.99771 * 14 11 9 36 36 H 1.09000 * 109.47466 * 59.99926 * 14 11 9 37 37 H 1.09004 * 109.46728 * 299.99300 * 15 14 11 38 38 H 1.08997 * 109.47347 * 60.00139 * 15 14 11 39 39 H 0.96997 * 120.00119 * 180.02562 * 19 18 16 40 40 H 1.09003 * 110.48789 * 95.06157 * 24 7 6 41 41 H 1.08995 * 110.49043 * 217.71159 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7642 2.2681 0.8532 5 6 1.7818 2.4325 -1.3278 6 6 2.6889 3.6744 -1.4479 7 6 3.9446 3.3846 -0.6072 8 1 4.8312 3.4053 -1.2409 9 7 4.0708 4.3755 0.4645 10 6 2.9952 4.5335 1.4464 11 16 5.4295 5.3169 0.5659 12 8 5.9181 5.3718 -0.7674 13 8 4.9924 6.4919 1.2348 14 6 6.5603 4.3677 1.6197 15 6 7.8684 5.1425 1.7918 16 6 8.8076 4.3541 2.6679 17 1 8.5020 3.3965 3.0628 18 6 10.0571 4.8555 2.9652 19 7 10.4291 6.0219 2.4847 20 14 11.2211 3.8787 4.0516 21 1 12.0538 2.9850 3.2071 22 1 12.1001 4.8123 4.8006 23 1 10.4349 3.0622 5.0109 24 6 3.7565 1.9768 -0.0049 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7340 2.7289 -1.2770 29 1 1.9477 1.7563 -2.1664 30 1 2.1734 4.5525 -1.0586 31 1 2.9661 3.8351 -2.4898 32 1 3.1728 3.8668 2.2903 33 1 2.0405 4.2859 0.9824 34 1 2.9721 5.5653 1.7971 35 1 6.1011 4.2096 2.5955 36 1 6.7670 3.4036 1.1550 37 1 8.3278 5.3009 0.8161 38 1 7.6613 6.1064 2.2568 39 1 11.3083 6.3744 2.6936 40 1 4.2411 1.2266 -0.6299 41 1 4.1502 1.9407 1.0108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318847775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:37 Heat of formation + Delta-G solvation = -85.914653 kcal Electronic energy + Delta-G solvation = -21873.400574 eV Core-core repulsion = 18620.200610 eV Total energy + Delta-G solvation = -3253.199964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 307.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.10494 -36.67070 -35.47637 -34.25189 -33.88354 -31.15961 -29.53263 -29.05969 -28.43388 -25.73886 -25.34409 -21.72698 -21.17779 -20.36212 -18.50732 -17.80285 -16.79048 -16.48993 -16.36526 -15.58748 -15.29621 -14.92404 -14.56438 -14.36003 -14.15030 -13.82054 -13.58669 -13.37913 -13.13306 -12.60922 -12.50575 -12.37497 -12.18062 -11.88838 -11.75876 -11.59722 -11.56049 -11.39729 -11.08127 -11.07286 -11.02039 -10.94643 -10.82791 -10.41587 -10.38072 -10.08365 -9.76083 -9.33311 -8.80063 -8.50317 -7.94685 -6.12433 -4.18024 0.73640 1.41660 2.29589 2.98552 3.26454 3.32704 3.35517 4.13759 4.23752 4.33042 4.39675 4.53607 4.69296 4.80043 4.82030 4.93752 5.06464 5.16157 5.18843 5.21502 5.22772 5.33118 5.36746 5.47892 5.52133 5.62453 5.65975 5.73304 5.77364 5.80196 5.94006 6.02032 6.22869 6.48993 6.68325 7.29617 7.35610 7.80665 8.17515 8.85452 9.46837 10.98603 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.003619 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.437730 B = 7735.156191 C = 8711.739829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.259 6.259 3 C -0.060 4.060 4 H 0.095 0.905 5 C -0.117 4.117 6 C -0.131 4.131 7 C 0.148 3.852 8 H 0.111 0.889 9 N -1.003 6.003 10 C 0.082 3.918 11 S 2.589 3.411 12 O -0.964 6.964 13 O -0.964 6.964 14 C -0.589 4.589 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.115 4.115 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.265 0.735 40 H 0.087 0.913 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.883 -9.477 -5.862 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.031 6.031 3 C -0.189 4.189 4 H 0.113 0.887 5 C -0.156 4.156 6 C -0.171 4.171 7 C 0.040 3.960 8 H 0.129 0.871 9 N -0.838 5.838 10 C -0.064 4.064 11 S 2.688 3.312 12 O -0.954 6.954 13 O -0.955 6.955 14 C -0.722 4.722 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.155 4.155 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.030 -9.396 -6.271 22.996 hybrid contribution -0.142 -0.093 1.056 1.069 sum -20.172 -9.489 -5.215 22.894 Atomic orbital electron populations 1.23355 0.94634 1.06260 1.04816 1.86940 1.06958 1.11307 1.97877 1.24294 1.00481 0.92880 1.01245 0.88658 1.22740 0.99339 0.97249 0.96319 1.22538 0.95601 0.98097 1.00914 1.21472 1.00274 0.86587 0.87636 0.87106 1.57791 1.34242 1.54030 1.37759 1.21541 0.90661 1.02937 0.91225 1.05756 0.74258 0.75309 0.75910 1.93531 1.80368 1.86390 1.35114 1.93522 1.79923 1.44822 1.77189 1.30483 1.14085 1.13746 1.13892 1.18964 0.87756 0.95295 0.99076 1.21006 0.99047 1.05059 1.30830 0.92034 1.25070 0.98176 0.95097 0.96144 1.69954 1.20567 1.17808 1.44555 0.86470 0.80659 0.79723 0.80443 1.20439 1.21009 1.19744 1.22662 0.92505 0.97012 1.03304 0.90552 0.88334 0.90645 0.91526 0.90029 0.90468 0.90327 0.92893 0.91221 0.89752 0.86271 0.86256 0.94882 0.94905 0.92526 0.89438 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.63 101.05 1.07 0.31 16 2 S -0.26 -2.40 21.82 -107.50 -2.35 -4.75 16 3 C -0.06 -0.52 2.89 -24.75 -0.07 -0.59 16 4 H 0.10 0.78 6.63 -51.93 -0.34 0.43 16 5 C -0.12 -0.90 6.16 -25.08 -0.15 -1.06 16 6 C -0.13 -1.22 5.98 -25.62 -0.15 -1.38 16 7 C 0.15 1.67 3.29 -66.81 -0.22 1.45 16 8 H 0.11 1.35 6.92 -51.93 -0.36 0.99 16 9 N -1.00 -12.95 2.94 -113.41 -0.33 -13.28 16 10 C 0.08 0.86 9.12 59.85 0.55 1.41 16 11 S 2.59 45.92 5.42 -107.50 -0.58 45.34 16 12 O -0.96 -19.52 16.59 -57.54 -0.95 -20.47 16 13 O -0.96 -19.69 16.57 -57.54 -0.95 -20.65 16 14 C -0.59 -11.20 6.12 37.16 0.23 -10.98 16 15 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 16 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 20 Si 0.90 21.25 29.54 -169.99 -5.02 16.22 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.11 -1.13 5.58 -25.08 -0.14 -1.27 16 25 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.10 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 30 H 0.08 0.73 6.91 -51.93 -0.36 0.37 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.58 5.56 -51.93 -0.29 0.29 16 34 H 0.08 0.98 6.91 -51.93 -0.36 0.62 16 35 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 36 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16 41 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -33.90 351.33 -10.33 -44.23 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.73 Total: -1.44 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 0.56 Total: -24.70 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.40 Total: -39.08 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.91 Total: -41.12 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 43.51 SS G_CDS: -2.93 Total: 40.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.90 -10.33 -44.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318847775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.684 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds