Wall clock time and date at job start Fri Apr 10 2020 21:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47542 * 2 1 4 4 C 1.50707 * 109.47050 * 240.00232 * 2 1 3 5 5 H 1.08001 * 120.00093 * 239.99977 * 4 2 1 6 6 C 1.37873 * 120.00089 * 60.00225 * 4 2 1 7 7 N 1.31514 * 119.99832 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00213 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47267 * 59.99616 * 8 6 4 10 10 H 1.48495 * 109.47406 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47113 * 299.99763 * 8 6 4 12 12 N 1.46493 * 109.47363 * 120.00151 * 2 1 3 13 13 C 1.46504 * 120.00187 * 59.99844 * 12 2 1 14 14 C 1.34776 * 120.00316 * 239.99648 * 12 2 1 15 15 O 1.21284 * 119.99898 * 5.57175 * 14 12 2 16 16 C 1.50704 * 120.00308 * 185.56412 * 14 12 2 17 17 C 1.50696 * 115.54573 * 65.96542 * 16 14 12 18 18 C 1.38261 * 119.99720 * 29.55456 * 17 16 14 19 19 C 1.38218 * 120.03069 * 179.72166 * 18 17 16 20 20 C 1.38237 * 120.01180 * 0.26609 * 19 18 17 21 21 C 1.38334 * 119.98596 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01053 * 180.02562 * 21 20 19 23 23 C 1.38197 * 119.99401 * 209.81859 * 17 16 14 24 24 C 1.52997 * 117.49904 * 211.64250 * 16 14 12 25 25 C 1.53006 * 117.49819 * 280.30067 * 16 14 12 26 26 H 1.09001 * 109.47082 * 59.99806 * 1 2 3 27 27 H 1.08997 * 109.46884 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46943 * 299.99812 * 1 2 3 29 29 H 0.97008 * 119.99706 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47277 * 264.79193 * 13 12 2 31 31 H 1.09004 * 109.46873 * 24.79014 * 13 12 2 32 32 H 1.09002 * 109.47604 * 144.78578 * 13 12 2 33 33 H 1.08003 * 119.98213 * 359.97438 * 18 17 16 34 34 H 1.08000 * 119.99639 * 180.25296 * 19 18 17 35 35 H 1.07996 * 120.00401 * 179.97438 * 20 19 18 36 36 H 1.08004 * 120.00719 * 359.97438 * 23 17 16 37 37 H 1.08998 * 117.49523 * 215.00571 * 24 16 14 38 38 H 1.08998 * 117.50250 * 0.02562 * 24 16 14 39 39 H 1.08998 * 117.49750 * 359.97404 * 25 16 14 40 40 H 1.08999 * 117.49323 * 144.99835 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5201 -4.0079 10 1 1.8260 -0.4204 -5.2205 11 1 3.8063 -1.1208 -4.0083 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0033 1.1508 1.9451 16 6 3.3987 -0.7776 3.2469 17 6 4.4232 -1.8231 2.8890 18 6 5.1951 -1.6737 1.7517 19 6 6.1390 -2.6293 1.4258 20 6 6.3080 -3.7381 2.2339 21 6 5.5318 -3.8912 3.3687 22 17 5.7439 -5.2830 4.3844 23 6 4.5873 -2.9340 3.6946 24 6 3.6067 -0.0010 4.5487 25 6 2.4994 -1.0537 4.4537 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7082 1.1610 -3.4844 30 1 0.7901 -2.1449 2.0766 31 1 1.4392 -2.5733 0.4756 32 1 2.5008 -2.6051 1.9040 33 1 5.0633 -0.8077 1.1199 34 1 6.7445 -2.5100 0.5395 35 1 7.0452 -4.4849 1.9790 36 1 3.9816 -3.0526 4.5809 37 1 4.4847 -0.2463 5.1462 38 1 3.3053 1.0463 4.5636 39 1 1.4701 -0.6983 4.4060 40 1 2.6490 -1.9915 4.9886 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339159823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:10 Heat of formation + Delta-G solvation = -3.490419 kcal Electronic energy + Delta-G solvation = -23493.394749 eV Core-core repulsion = 20106.281311 eV Total energy + Delta-G solvation = -3387.113438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.108 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.71409 -39.94748 -37.88021 -37.30745 -36.87022 -34.73477 -31.85063 -31.73154 -31.23050 -27.66149 -27.31782 -25.99601 -23.89933 -23.78505 -22.95577 -21.77345 -19.74127 -18.66792 -18.39733 -17.56482 -17.20667 -16.49061 -16.35030 -16.16644 -15.89098 -15.37977 -15.00978 -14.76216 -14.51812 -14.39445 -13.83555 -13.75156 -13.54612 -13.14864 -12.93501 -12.81789 -12.77595 -12.70812 -12.57858 -12.53311 -12.31873 -12.20649 -12.14159 -11.91837 -11.57708 -11.52587 -11.22739 -10.66955 -10.48557 -9.85767 -9.58001 -9.34689 -8.15307 -6.31704 0.11619 0.22688 1.10815 1.40548 1.42318 1.49833 1.66717 2.24729 2.42710 2.47261 2.94512 3.12702 3.39175 3.58410 3.73900 3.94804 3.95918 4.11885 4.21782 4.39811 4.46152 4.54409 4.65508 4.69715 4.70088 4.78067 4.88402 4.92879 4.95867 4.99456 5.05509 5.14947 5.20698 5.33135 5.45258 5.50776 5.58986 5.65511 5.74759 6.02058 6.15007 6.75215 6.79748 7.28824 7.45308 8.89004 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.004819 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.517343 B = 5809.450122 C = 6925.368309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.263 3.737 3 H 0.007 0.993 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.587 5.587 13 C 0.086 3.914 14 C 0.536 3.464 15 O -0.602 6.602 16 C -0.138 4.138 17 C -0.023 4.023 18 C -0.122 4.122 19 C -0.101 4.101 20 C -0.110 4.110 21 C -0.032 4.032 22 Cl -0.060 7.060 23 C -0.104 4.104 24 C -0.132 4.132 25 C -0.130 4.130 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.018 0.982 29 H 0.264 0.736 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.373 -13.000 14.901 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.025 0.975 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.787 3.213 9 H -0.188 1.188 10 H -0.209 1.209 11 H -0.201 1.201 12 N -0.315 5.315 13 C -0.057 4.057 14 C 0.324 3.676 15 O -0.484 6.484 16 C -0.141 4.141 17 C -0.024 4.024 18 C -0.141 4.141 19 C -0.119 4.119 20 C -0.129 4.129 21 C -0.059 4.059 22 Cl -0.031 7.031 23 C -0.122 4.122 24 C -0.170 4.170 25 C -0.166 4.166 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.162 0.838 35 H 0.173 0.827 36 H 0.177 0.823 37 H 0.145 0.855 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.375 -12.422 14.749 20.645 hybrid contribution 0.114 0.291 -1.408 1.442 sum 7.488 -12.131 13.341 19.525 Atomic orbital electron populations 1.21865 0.97180 1.00046 0.99900 1.18554 0.91676 0.92075 0.81594 0.97468 1.21483 1.31921 1.12988 0.90955 0.92205 1.25701 0.95049 0.95593 1.01902 1.70019 1.37213 1.23870 1.24469 0.85552 0.78509 0.78985 0.78263 1.18814 1.20922 1.20124 1.48085 1.48366 1.13084 1.21999 1.21786 1.00861 0.80852 1.02167 1.19961 0.78213 0.86273 0.83135 1.90614 1.63312 1.17885 1.76632 1.20021 1.02615 1.01834 0.89630 1.18553 0.95062 0.93739 0.95035 1.21108 0.96616 0.99491 0.96837 1.21238 0.97516 0.93115 1.00012 1.21275 0.99855 0.98545 0.93210 1.20890 0.99464 0.90900 0.94630 1.98371 1.96615 1.40569 1.67577 1.20963 0.98415 0.91797 1.01049 1.23159 1.01868 0.97771 0.94161 1.23360 0.96071 1.02000 0.95211 0.91325 0.93533 0.96267 0.92638 0.91543 0.91400 0.90469 0.88949 0.83772 0.82701 0.82284 0.85457 0.89206 0.88107 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 8.97 71.98 0.65 -5.79 16 2 C 0.26 13.85 2.63 44.25 0.12 13.96 16 3 H 0.01 0.46 6.91 -2.39 -0.02 0.45 16 4 C -0.54 -29.08 7.96 25.60 0.20 -28.88 16 5 H 0.06 3.17 7.42 -2.91 -0.02 3.15 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 8 Si 0.96 42.96 29.54 68.60 2.03 44.98 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 12 N -0.59 -25.28 2.75 -826.78 -2.28 -27.56 16 13 C 0.09 2.88 9.03 127.77 1.15 4.04 16 14 C 0.54 22.71 5.74 87.66 0.50 23.22 16 15 O -0.60 -31.45 16.05 -3.04 -0.05 -31.50 16 16 C -0.14 -4.10 1.38 -53.67 -0.07 -4.18 16 17 C -0.02 -0.63 3.55 -19.87 -0.07 -0.70 16 18 C -0.12 -3.77 9.32 22.27 0.21 -3.56 16 19 C -0.10 -2.47 10.05 22.26 0.22 -2.25 16 20 C -0.11 -2.23 9.83 22.29 0.22 -2.02 16 21 C -0.03 -0.64 6.32 22.32 0.14 -0.50 16 22 Cl -0.06 -1.03 28.96 -2.72 -0.08 -1.11 16 23 C -0.10 -2.15 9.08 22.29 0.20 -1.95 16 24 C -0.13 -3.23 9.73 30.62 0.30 -2.93 16 25 C -0.13 -2.71 9.42 30.62 0.29 -2.43 16 26 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 27 H 0.05 2.07 7.67 -2.39 -0.02 2.05 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 2.45 7.10 -2.39 -0.02 2.43 16 32 H 0.08 2.26 5.37 -2.39 -0.01 2.25 16 33 H 0.09 3.57 7.33 -2.91 -0.02 3.55 16 34 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.16 2.43 5.95 -2.91 -0.02 2.41 16 37 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.09 2.53 8.00 -2.39 -0.02 2.51 16 39 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.14 1.91 6.10 -2.39 -0.01 1.90 16 Total: -1.00 -68.76 343.17 5.43 -63.34 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 1.05 Total: 17.13 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.51 Total: -12.56 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.03 Total: -80.29 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.05 Total: -31.50 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -68.76 5.43 -63.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339159823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.848 kcal (2) G-P(sol) polarization free energy of solvation -68.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds